Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc11e02
         (175 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292336-1|CAL23148.2|  455|Tribolium castaneum gustatory recept...    23   0.29 
AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory recept...    19   3.5  
AM292362-1|CAL23174.2|  398|Tribolium castaneum gustatory recept...    19   3.5  
AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    19   4.7  
AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein ...    19   6.2  
L01616-1|AAA30096.1|   74|Tribolium castaneum zinc finger protei...    18   8.2  
AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.     18   8.2  

>AM292336-1|CAL23148.2|  455|Tribolium castaneum gustatory receptor
           candidate 15 protein.
          Length = 455

 Score = 23.0 bits (47), Expect = 0.29
 Identities = 8/22 (36%), Positives = 15/22 (68%)
 Frame = -1

Query: 70  LQTVSFSIPRTINFTNVYSFFH 5
           LQTV F++PR + + +++   H
Sbjct: 216 LQTVFFTVPRVLMYFDIFITEH 237


>AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory receptor
            candidate 46 protein.
          Length = 1451

 Score = 19.4 bits (38), Expect = 3.5
 Identities = 7/12 (58%), Positives = 11/12 (91%)
 Frame = -2

Query: 99   NCVKLVSIINSR 64
            +CV+LVS+I +R
Sbjct: 1257 HCVELVSMIKAR 1268


>AM292362-1|CAL23174.2|  398|Tribolium castaneum gustatory receptor
           candidate 41 protein.
          Length = 398

 Score = 19.4 bits (38), Expect = 3.5
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +1

Query: 91  YTINFITTMFTVCLVRIF 144
           YTI  I T+  +C+  IF
Sbjct: 44  YTIGVIITIGCLCIWSIF 61


>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 19.0 bits (37), Expect = 4.7
 Identities = 5/16 (31%), Positives = 11/16 (68%)
 Frame = -2

Query: 48  FQEQLISQMCIHFFII 1
           F   L+  +CI++F++
Sbjct: 123 FTVHLLFLLCIYYFVV 138


>AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein
           protein.
          Length = 370

 Score = 18.6 bits (36), Expect = 6.2
 Identities = 5/9 (55%), Positives = 7/9 (77%)
 Frame = -2

Query: 123 CKHCSYKIN 97
           C+HCS K +
Sbjct: 221 CEHCSMKFS 229


>L01616-1|AAA30096.1|   74|Tribolium castaneum zinc finger protein
           protein.
          Length = 74

 Score = 18.2 bits (35), Expect = 8.2
 Identities = 5/7 (71%), Positives = 6/7 (85%)
 Frame = -2

Query: 123 CKHCSYK 103
           C+HCS K
Sbjct: 68  CEHCSMK 74


>AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.
          Length = 697

 Score = 18.2 bits (35), Expect = 8.2
 Identities = 6/19 (31%), Positives = 11/19 (57%)
 Frame = -1

Query: 61  VSFSIPRTINFTNVYSFFH 5
           V  S+P T  +T +  ++H
Sbjct: 49  VKDSVPMTCRYTFLLEWYH 67


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 34,607
Number of Sequences: 336
Number of extensions: 491
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 37
effective length of database: 110,153
effective search space used:  2203060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 34 (18.5 bits)