Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc11e02
         (175 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomy...    25   1.8  
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual    25   1.8  
SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces po...    23   4.1  
SPAC23C11.01 |||ER membrane protein, ICE2 family|Schizosaccharom...    23   5.4  
SPCC1827.08c |pof7|SPCC70.11c|F-box protein Pof7|Schizosaccharom...    23   7.1  
SPAC9.11 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Ma...    23   7.1  
SPBC1773.12 |||transcription factor |Schizosaccharomyces pombe|c...    22   9.4  
SPCC757.04 |||transcription factor |Schizosaccharomyces pombe|ch...    22   9.4  
SPBC36.05c |clr6||histone deacetylase |Schizosaccharomyces pombe...    22   9.4  

>SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 603

 Score = 24.6 bits (51), Expect = 1.8
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = -1

Query: 88  TRQHYQLQTVSFSIPRTINFTNVYSFFH 5
           ++ H+Q +  +F IPR +       FFH
Sbjct: 437 SQPHFQPRAPTFGIPRNVRSLFTLPFFH 464


>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1828

 Score = 24.6 bits (51), Expect = 1.8
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = -2

Query: 114  CSYKINCVKLVSIINSRQFLF 52
            C Y   CVKL+ II S  +LF
Sbjct: 1083 CHYS-ECVKLLEIIKSEYYLF 1102


>SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1564

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = -1

Query: 97  LCKTRQHYQLQTVSFSIPRTINFTNVYSFFHY 2
           L KT Q YQL   + S+ R +NF      F Y
Sbjct: 428 LFKTPQVYQLFENNDSVTRLLNFARARFPFEY 459


>SPAC23C11.01 |||ER membrane protein, ICE2
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 441

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 7/15 (46%), Positives = 12/15 (80%)
 Frame = -1

Query: 79  HYQLQTVSFSIPRTI 35
           HY + T+S ++PRT+
Sbjct: 295 HYLISTISATLPRTL 309


>SPCC1827.08c |pof7|SPCC70.11c|F-box protein
           Pof7|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 361

 Score = 22.6 bits (46), Expect = 7.1
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = -1

Query: 175 WVNFYSIENVKKF 137
           W++FYSI N   F
Sbjct: 319 WISFYSIHNYTSF 331


>SPAC9.11 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 328

 Score = 22.6 bits (46), Expect = 7.1
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +1

Query: 37  LFLESKKKLSGVDNADEFY 93
           +F  S+ K  G DN D FY
Sbjct: 246 VFDSSQHKTQGTDNNDSFY 264


>SPBC1773.12 |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 594

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 7/25 (28%), Positives = 17/25 (68%)
 Frame = -1

Query: 85  RQHYQLQTVSFSIPRTINFTNVYSF 11
           +Q+Y +  ++ +IP+ ++F N + F
Sbjct: 425 KQYYDVIKLNGTIPKNVDFENQHIF 449


>SPCC757.04 |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 684

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = -2

Query: 96  CVKLVSIINSRQFLFRFQEQLISQMCIHF 10
           C+KL       QFLF ++E  +S    +F
Sbjct: 204 CLKLFFRYQYSQFLFVYRESFLSDYYYNF 232


>SPBC36.05c |clr6||histone deacetylase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 405

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +3

Query: 84  RVLHN*FYNYNVYSVLS 134
           R++HN   NYN+Y  L+
Sbjct: 33  RMVHNLVVNYNLYEKLN 49


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 583,134
Number of Sequences: 5004
Number of extensions: 7496
Number of successful extensions: 31
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31
length of database: 2,362,478
effective HSP length: 38
effective length of database: 2,172,326
effective search space used: 41274194
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)