Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc11e02
(175 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z70036-1|CAA93875.1| 522|Caenorhabditis elegans Hypothetical pr... 26 3.1
Z46241-2|CAA86315.1| 144|Caenorhabditis elegans Hypothetical pr... 26 3.1
Z46241-1|CAA86323.1| 462|Caenorhabditis elegans Hypothetical pr... 26 3.1
AL032626-11|CAC44300.1| 140|Caenorhabditis elegans Hypothetical... 26 3.1
AL032626-10|CAA21531.1| 458|Caenorhabditis elegans Hypothetical... 26 3.1
AF106582-2|AAC78213.1| 457|Caenorhabditis elegans Hypothetical ... 26 3.1
AF039716-2|AAB96737.1| 462|Caenorhabditis elegans Hypothetical ... 26 3.1
Z81531-7|CAB04320.1| 722|Caenorhabditis elegans Hypothetical pr... 25 7.2
Z50740-2|CAA90608.1| 383|Caenorhabditis elegans Hypothetical pr... 25 7.2
Z82285-5|CAB05298.2| 1679|Caenorhabditis elegans Hypothetical pr... 25 9.5
Z68343-4|CAA92780.2| 298|Caenorhabditis elegans Hypothetical pr... 25 9.5
Z68342-11|CAA92777.2| 298|Caenorhabditis elegans Hypothetical p... 25 9.5
>Z70036-1|CAA93875.1| 522|Caenorhabditis elegans Hypothetical
protein T01B4.1 protein.
Length = 522
Score = 26.2 bits (55), Expect = 3.1
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = +2
Query: 20 HICEINCSWNRKRNCLELIMLT 85
H+ ++NC + ++ CLELI T
Sbjct: 89 HLKQMNCGQSNEKRCLELITKT 110
>Z46241-2|CAA86315.1| 144|Caenorhabditis elegans Hypothetical
protein C38D4.1b protein.
Length = 144
Score = 26.2 bits (55), Expect = 3.1
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = -2
Query: 153 KTLKNSH*AHCKHCSYKINCVK 88
+T KN + HC C+Y IN K
Sbjct: 84 QTCKNGNGTHCPSCAYTINVHK 105
>Z46241-1|CAA86323.1| 462|Caenorhabditis elegans Hypothetical
protein C38D4.1a protein.
Length = 462
Score = 26.2 bits (55), Expect = 3.1
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = -2
Query: 153 KTLKNSH*AHCKHCSYKINCVK 88
+T KN + HC C+Y IN K
Sbjct: 84 QTCKNGNGTHCPSCAYTINVHK 105
>AL032626-11|CAC44300.1| 140|Caenorhabditis elegans Hypothetical
protein Y37D8A.12b protein.
Length = 140
Score = 26.2 bits (55), Expect = 3.1
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = -2
Query: 153 KTLKNSH*AHCKHCSYKINCVK 88
+T KN + HC C+Y IN K
Sbjct: 80 QTCKNGNGTHCPSCAYMINVHK 101
>AL032626-10|CAA21531.1| 458|Caenorhabditis elegans Hypothetical
protein Y37D8A.12a protein.
Length = 458
Score = 26.2 bits (55), Expect = 3.1
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = -2
Query: 153 KTLKNSH*AHCKHCSYKINCVK 88
+T KN + HC C+Y IN K
Sbjct: 80 QTCKNGNGTHCPSCAYMINVHK 101
>AF106582-2|AAC78213.1| 457|Caenorhabditis elegans Hypothetical
protein W05F2.2 protein.
Length = 457
Score = 26.2 bits (55), Expect = 3.1
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = -2
Query: 153 KTLKNSH*AHCKHCSYKINCVK 88
+T KN + HC C+Y IN K
Sbjct: 84 QTCKNGNGTHCPSCAYTINVHK 105
>AF039716-2|AAB96737.1| 462|Caenorhabditis elegans Hypothetical
protein W03G9.3 protein.
Length = 462
Score = 26.2 bits (55), Expect = 3.1
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = -2
Query: 153 KTLKNSH*AHCKHCSYKINCVK 88
+T KN + HC C+Y IN K
Sbjct: 84 QTCKNGNGTHCPSCAYTINVHK 105
>Z81531-7|CAB04320.1| 722|Caenorhabditis elegans Hypothetical
protein F36D3.8 protein.
Length = 722
Score = 25.0 bits (52), Expect = 7.2
Identities = 11/28 (39%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Frame = -1
Query: 94 CK-TRQHYQLQTVSFSIPRTINFTNVYS 14
CK +R H + + +P I+FT VYS
Sbjct: 686 CKPSRVHIDNLSYKYEVPEDIDFTKVYS 713
>Z50740-2|CAA90608.1| 383|Caenorhabditis elegans Hypothetical
protein F31B12.3 protein.
Length = 383
Score = 25.0 bits (52), Expect = 7.2
Identities = 12/23 (52%), Positives = 19/23 (82%), Gaps = 1/23 (4%)
Frame = -2
Query: 93 VKLVSIIN-SRQFLFRFQEQLIS 28
VKL++ +N S + LF+FQ+Q+IS
Sbjct: 145 VKLLTNLNLSNKILFQFQDQVIS 167
>Z82285-5|CAB05298.2| 1679|Caenorhabditis elegans Hypothetical protein
T28F3.5 protein.
Length = 1679
Score = 24.6 bits (51), Expect = 9.5
Identities = 8/14 (57%), Positives = 12/14 (85%)
Frame = +1
Query: 52 KKKLSGVDNADEFY 93
+KK+ GVDN ++FY
Sbjct: 1606 QKKIDGVDNLEQFY 1619
>Z68343-4|CAA92780.2| 298|Caenorhabditis elegans Hypothetical
protein F38E11.9 protein.
Length = 298
Score = 24.6 bits (51), Expect = 9.5
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = +2
Query: 32 INCSWNRKRNCLELIM 79
+N SW R RNCL +I+
Sbjct: 66 VNFSWIRCRNCLAIIV 81
>Z68342-11|CAA92777.2| 298|Caenorhabditis elegans Hypothetical
protein F38E11.9 protein.
Length = 298
Score = 24.6 bits (51), Expect = 9.5
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = +2
Query: 32 INCSWNRKRNCLELIM 79
+N SW R RNCL +I+
Sbjct: 66 VNFSWIRCRNCLAIIV 81
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,173,207
Number of Sequences: 27780
Number of extensions: 42138
Number of successful extensions: 123
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 12,740,198
effective HSP length: 38
effective length of database: 11,684,558
effective search space used: 222006602
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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