Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc11d23
         (763 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25B8.16 |||RNase P and RNase MRP subunit |Schizosaccharomyce...    26   5.1  
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||...    26   5.1  
SPAC2F7.13c |||tryptophan-tRNA ligase |Schizosaccharomyces pombe...    26   6.7  
SPAC926.09c |fas1||fatty acid synthase beta subunit Fas1|Schizos...    25   8.9  

>SPAC25B8.16 |||RNase P and RNase MRP subunit |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 698

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 9/26 (34%), Positives = 17/26 (65%)
 Frame = -1

Query: 610 QWPSVTLRKSLTRQPLMRSKCSEETA 533
           +W ++  +++LT + L+  KC  ETA
Sbjct: 616 KWKTIIYKENLTAENLLYPKCPNETA 641


>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 3227

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 4/44 (9%)
 Frame = +3

Query: 393  VNTS--VGLSCCGEDLS*YDEP--LNLRGSFVDLVYLGVPHQFL 512
            +NTS   G++    ++  Y EP  +N+RG  VD+  LG+   FL
Sbjct: 2229 INTSDMEGVTTEANEIGSYQEPSLINIRGREVDVSSLGIDPTFL 2272


>SPAC2F7.13c |||tryptophan-tRNA ligase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 395

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = +3

Query: 450 PLNLRGSFVDLVYLGVPHQFLDWVFGVEAVSSEHLDR 560
           P +++GS VD    G+ ++ L   FG   ++ E L+R
Sbjct: 10  PWDVKGSIVDGEEKGIDYERLIVQFGTRKITPEQLER 46


>SPAC926.09c |fas1||fatty acid synthase beta subunit
           Fas1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2073

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 12/66 (18%), Positives = 34/66 (51%)
 Frame = -3

Query: 620 VMASVAKCHASEIANKAATDAVQVFGGNGFNTEYPVEKLMRDAKIYQIYEGTSQIQRLII 441
           ++    K H S + ++++     +FGG G+   +  ++L+   ++Y++Y   +     ++
Sbjct: 136 LIGQTTKFHGSALLDESSVKLAAIFGGQGYEDYF--DELI---ELYEVYAPFAAELIQVL 190

Query: 440 SREILT 423
           S+ + T
Sbjct: 191 SKHLFT 196


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,193,461
Number of Sequences: 5004
Number of extensions: 67058
Number of successful extensions: 157
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 365309308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)