Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc11d23
(763 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0195 - 1409820-1409966,1410304-1410360,1410774-1410828,141... 71 1e-12
06_02_0285 + 13789900-13790071,13790407-13790525,13790642-137907... 57 2e-08
05_01_0464 - 3670397-3670525,3671152-3671244,3671366-3671537,367... 55 5e-08
01_01_0413 - 3107668-3107796,3107879-3107971,3108082-3108253,310... 54 9e-08
06_02_0283 + 13726047-13726090,13726160-13726266,13726515-137266... 49 4e-06
07_03_1669 + 28499143-28499409,28499915-28500055,28500528-285006... 48 6e-06
09_04_0219 - 15774809-15775198 29 5.3
10_08_0505 + 18384392-18384454,18384593-18384679,18385878-183864... 28 9.3
08_01_0267 - 2153421-2153759,2153895-2154098,2154358-2154429,215... 28 9.3
>05_01_0195 -
1409820-1409966,1410304-1410360,1410774-1410828,
1410902-1411002,1411051-1411205,1411395-1411459,
1411545-1411595,1411817-1411893,1412153-1412262,
1412355-1412403,1412528-1412572,1412689-1412813,
1413087-1413228,1413336-1413446
Length = 429
Score = 70.5 bits (165), Expect = 1e-12
Identities = 36/93 (38%), Positives = 57/93 (61%)
Frame = -3
Query: 707 LADMAIGVETARIAWQRAAWMVDHGQKNTVMASVAKCHASEIANKAATDAVQVFGGNGFN 528
LADM ++++R A D+G+ + + A+E A + A A+Q GGNG+
Sbjct: 333 LADMYTSLQSSRSFVYSVARDCDNGKVDRKDCAGVILFAAERATQVALQAIQCLGGNGYI 392
Query: 527 TEYPVEKLMRDAKIYQIYEGTSQIQRLIISREI 429
EYP +L+RDAK+++I GTS+I+R+II RE+
Sbjct: 393 NEYPTGRLLRDAKLFEIGAGTSEIRRMIIGREL 425
>06_02_0285 +
13789900-13790071,13790407-13790525,13790642-13790751,
13790887-13791046,13791407-13791483,13792299-13792470,
13792580-13792672,13793617-13793733
Length = 339
Score = 56.8 bits (131), Expect = 2e-08
Identities = 34/116 (29%), Positives = 55/116 (47%)
Frame = -3
Query: 761 ERKTFGVPIARHQAVAFMLADMAIGVETARIAWQRAAWMVDHGQKNTVMASVAKCHASEI 582
ERK FG P+A Q L M ++ + R + D G+ T AS+ K ++
Sbjct: 217 ERKQFGAPLAAFQLNQEKLVRMLGNIQAMWLLGWRLCKLHDSGRMTTGQASLGKAWITKQ 276
Query: 581 ANKAATDAVQVFGGNGFNTEYPVEKLMRDAKIYQIYEGTSQIQRLIISREILTAAT 414
A + ++ GGNG T++ V K D + YEG+ ++ L+ +REI A+
Sbjct: 277 ARETVALGRELLGGNGIVTDFHVGKAFCDMESIYTYEGSYEVNVLVAAREITGIAS 332
>05_01_0464 -
3670397-3670525,3671152-3671244,3671366-3671537,
3671626-3671702,3671819-3671978,3672104-3672213,
3672321-3672380,3672492-3672629,3672922-3672999,
3673227-3673333,3674506-3674598,3674708-3674723
Length = 410
Score = 55.2 bits (127), Expect = 5e-08
Identities = 35/116 (30%), Positives = 53/116 (45%)
Frame = -3
Query: 761 ERKTFGVPIARHQAVAFMLADMAIGVETARIAWQRAAWMVDHGQKNTVMASVAKCHASEI 582
ERK FGVP+A Q L M ++ + R + + G+ AS+ K S+
Sbjct: 284 ERKQFGVPLAAFQLNQEKLVRMLGNIQAMLLVGWRLCKLYESGKMTPGHASLGKAWTSKK 343
Query: 581 ANKAATDAVQVFGGNGFNTEYPVEKLMRDAKIYQIYEGTSQIQRLIISREILTAAT 414
A + + ++ GGNG ++ V K D + YEGT I L+ REI A+
Sbjct: 344 AREVVSLGRELLGGNGILADFLVAKAFCDLEPIFSYEGTYDINSLVTGREITGIAS 399
>01_01_0413 -
3107668-3107796,3107879-3107971,3108082-3108253,
3108341-3108417,3108514-3108673,3108766-3108875,
3109384-3109443,3109545-3109618,3109748-3109871,
3110795-3110872,3111169-3111275,3112572-3112673,
3112800-3112815
Length = 433
Score = 54.4 bits (125), Expect = 9e-08
Identities = 34/116 (29%), Positives = 52/116 (44%)
Frame = -3
Query: 761 ERKTFGVPIARHQAVAFMLADMAIGVETARIAWQRAAWMVDHGQKNTVMASVAKCHASEI 582
ERK FGVP+ Q L M ++ + R + + G+ AS+ K S +
Sbjct: 307 ERKQFGVPLVAFQLNQEKLVRMLGNIQAMLLVGWRLCKLYESGKMTPGHASLGKGWTSRM 366
Query: 581 ANKAATDAVQVFGGNGFNTEYPVEKLMRDAKIYQIYEGTSQIQRLIISREILTAAT 414
A + + ++ GGNG ++ V K D + YEGT I L+ REI A+
Sbjct: 367 AREVVSLGRELLGGNGILADFLVAKAFCDLEPIYSYEGTYDINSLVTGREITGIAS 422
>06_02_0283 +
13726047-13726090,13726160-13726266,13726515-13726621,
13726735-13726812,13734948-13735071,13735585-13735658,
13735742-13735801,13737561-13737670,13737806-13737965,
13738218-13738360,13738461-13738605,13738727-13738819,
13740070-13740186
Length = 453
Score = 49.2 bits (112), Expect = 4e-06
Identities = 35/116 (30%), Positives = 56/116 (48%)
Frame = -3
Query: 761 ERKTFGVPIARHQAVAFMLADMAIGVETARIAWQRAAWMVDHGQKNTVMASVAKCHASEI 582
ERK FG P+A AF L + + W R + D G+ T AS+ K ++
Sbjct: 340 ERKQFGAPLA-----AFQLNQEKL---MWLLGW-RLYELHDSGRMTTGQASLGKAWITKK 390
Query: 581 ANKAATDAVQVFGGNGFNTEYPVEKLMRDAKIYQIYEGTSQIQRLIISREILTAAT 414
A + ++ GGNG T++ V K D + YEG+ ++ LI++R+I A+
Sbjct: 391 ARETVALGRELLGGNGIVTDFHVGKAFCDMESLYTYEGSYEVNALIVARDITGIAS 446
>07_03_1669 +
28499143-28499409,28499915-28500055,28500528-28500659,
28501185-28501373,28501503-28501580,28502267-28502386,
28502701-28502818,28503012-28503280,28503428-28503622,
28503737-28503879,28504096-28504180,28504270-28504479,
28504559-28504711,28504862-28504966,28505044-28505235
Length = 798
Score = 48.4 bits (110), Expect = 6e-06
Identities = 33/103 (32%), Positives = 53/103 (51%), Gaps = 2/103 (1%)
Frame = -3
Query: 758 RKTFGVPIARHQAVAFMLADMAIGVETARIAWQRAAWMVD-HGQKNT-VMASVAKCHASE 585
R TFG IA+H + LA + +E AR+ AA +D HG K + ++AK A
Sbjct: 681 RTTFGKKIAQHGSFLADLAKCRVELEQARLLVLEAADQLDRHGNKKARGILAMAKVAAPN 740
Query: 584 IANKAATDAVQVFGGNGFNTEYPVEKLMRDAKIYQIYEGTSQI 456
+A K A+QV GG G +++ + L A+ +I +G ++
Sbjct: 741 MALKVLDMAMQVHGGAGLSSDTVLSHLWATARTLRIADGPDEV 783
>09_04_0219 - 15774809-15775198
Length = 129
Score = 28.7 bits (61), Expect = 5.3
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = -1
Query: 484 TKSTKEPRRFKGSSYQERSSPQQLKPTDVLT 392
T +T+EP SSYQ S P + + D+LT
Sbjct: 90 TTTTREPTGNASSSYQRASPPAEARRRDLLT 120
>10_08_0505 +
18384392-18384454,18384593-18384679,18385878-18386409,
18387042-18387564,18387734-18387791
Length = 420
Score = 27.9 bits (59), Expect = 9.3
Identities = 23/83 (27%), Positives = 39/83 (46%), Gaps = 8/83 (9%)
Frame = -3
Query: 704 ADMAIGVETARIAWQRAAWMVDHGQKNTVMAS-VAKCHASEIANK-------AATDAVQV 549
A +G+ TA+ + W V G ++ + AS AK E + A+ D+V+
Sbjct: 93 ASSGLGLATAKALAETGRWHVVMGCRDFLKASRAAKAAGMEKGSYTIVHLDLASLDSVRQ 152
Query: 548 FGGNGFNTEYPVEKLMRDAKIYQ 480
F N E PV+ ++ +A +YQ
Sbjct: 153 FVANVRRLEMPVDVVVCNAAVYQ 175
>08_01_0267 -
2153421-2153759,2153895-2154098,2154358-2154429,
2154514-2154599,2154704-2154830,2154899-2155052,
2156129-2156451
Length = 434
Score = 27.9 bits (59), Expect = 9.3
Identities = 21/86 (24%), Positives = 38/86 (44%), Gaps = 3/86 (3%)
Frame = -3
Query: 758 RKTFGVPIARHQAVAF-MLADMAIGVETARIAWQRAA--WMVDHGQKNTVMASVAKCHAS 588
R+ +PI + A +L++ G E+ R R A W+ G+K+ + AS +A
Sbjct: 48 RRASTIPIRANGVNACTILSNSTTGQESPREVEDRGASMWLEGPGRKSVISASGIPKYAY 107
Query: 587 EIANKAATDAVQVFGGNGFNTEYPVE 510
+ KA ++ + G F Y +
Sbjct: 108 KELQKATSNFTTLLGQGAFGPVYKAD 133
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,097,943
Number of Sequences: 37544
Number of extensions: 419938
Number of successful extensions: 1018
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 998
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1017
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2039640244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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