Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc11d23
(763 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U42838-2|AAB52493.1| 417|Caenorhabditis elegans Hypothetical pr... 156 2e-38
U43283-1|AAC69025.1| 412|Caenorhabditis elegans Hypothetical pr... 148 5e-36
U29377-4|AAA68712.1| 412|Caenorhabditis elegans Hypothetical pr... 144 8e-35
AC006632-9|AAK85472.1| 409|Caenorhabditis elegans Hypothetical ... 89 4e-18
AF127558-1|AAD21088.1| 419|Caenorhabditis elegans isovaleryl-Co... 75 6e-14
AF039038-2|AAK21433.1| 419|Caenorhabditis elegans Hypothetical ... 75 6e-14
AF038605-3|AAB92016.1| 419|Caenorhabditis elegans Hypothetical ... 75 6e-14
AC006625-5|AAK68275.1| 427|Caenorhabditis elegans Acyl coa dehy... 75 7e-14
U41279-9|AAL02437.1| 220|Caenorhabditis elegans Hypothetical pr... 62 6e-10
U41279-8|AAL02436.1| 307|Caenorhabditis elegans Hypothetical pr... 62 6e-10
Z66513-4|CAA91333.1| 409|Caenorhabditis elegans Hypothetical pr... 58 7e-09
U28943-2|AAA68357.1| 613|Caenorhabditis elegans Hypothetical pr... 54 1e-07
AL032621-7|CAJ30236.1| 608|Caenorhabditis elegans Hypothetical ... 41 0.001
AL032621-6|CAA21490.1| 617|Caenorhabditis elegans Hypothetical ... 41 0.001
Z67736-2|CAA91535.1| 226|Caenorhabditis elegans Hypothetical pr... 31 0.68
U67954-1|AAB52605.2| 826|Caenorhabditis elegans Hypothetical pr... 31 0.89
AF016427-8|AAB65355.1| 513|Caenorhabditis elegans Hypothetical ... 30 1.6
U55363-8|AAA97966.1| 829|Caenorhabditis elegans Germinal center... 28 6.3
AC006733-3|AAF60488.2| 372|Caenorhabditis elegans Hypothetical ... 28 8.3
>U42838-2|AAB52493.1| 417|Caenorhabditis elegans Hypothetical
protein T08G2.3 protein.
Length = 417
Score = 156 bits (378), Expect = 2e-38
Identities = 74/112 (66%), Positives = 93/112 (83%)
Frame = -3
Query: 761 ERKTFGVPIARHQAVAFMLADMAIGVETARIAWQRAAWMVDHGQKNTVMASVAKCHASEI 582
ERK FG IA HQAV FMLADMA+ +E AR+ ++A VD+ +++ AS+AKC A++
Sbjct: 295 ERKAFGTVIANHQAVQFMLADMAVNLELARLITYKSANDVDNKVRSSYNASIAKCFAADT 354
Query: 581 ANKAATDAVQVFGGNGFNTEYPVEKLMRDAKIYQIYEGTSQIQRLIISREIL 426
AN+AAT+AVQ+FGGNGFN+EYPVEKLMRDAKIYQIYEGTSQIQR++ISR +L
Sbjct: 355 ANQAATNAVQIFGGNGFNSEYPVEKLMRDAKIYQIYEGTSQIQRIVISRMLL 406
>U43283-1|AAC69025.1| 412|Caenorhabditis elegans Hypothetical
protein T25G12.5 protein.
Length = 412
Score = 148 bits (358), Expect = 5e-36
Identities = 70/117 (59%), Positives = 89/117 (76%)
Frame = -3
Query: 761 ERKTFGVPIARHQAVAFMLADMAIGVETARIAWQRAAWMVDHGQKNTVMASVAKCHASEI 582
ERK FG IA HQ V+F+LA+MAI E AR+ ++ VD G+ + AS+AK AS+
Sbjct: 292 ERKAFGTQIANHQGVSFLLAEMAINCELARLMTYKSGAEVDAGRPGSYYASIAKLFASDT 351
Query: 581 ANKAATDAVQVFGGNGFNTEYPVEKLMRDAKIYQIYEGTSQIQRLIISREILTAATQ 411
AN+AAT+AVQ+FGG GFNTEYP EKLMRDAKI+QIYEGTSQIQR++I+R++L Q
Sbjct: 352 ANQAATNAVQIFGGAGFNTEYPAEKLMRDAKIFQIYEGTSQIQRMVIARQLLARVAQ 408
>U29377-4|AAA68712.1| 412|Caenorhabditis elegans Hypothetical
protein K05F1.3 protein.
Length = 412
Score = 144 bits (348), Expect = 8e-35
Identities = 70/111 (63%), Positives = 84/111 (75%)
Frame = -3
Query: 761 ERKTFGVPIARHQAVAFMLADMAIGVETARIAWQRAAWMVDHGQKNTVMASVAKCHASEI 582
ER FG PIA HQ V FM+ADMAI +E +R+ RAA VD ++ AS+AKC A++
Sbjct: 289 ERHAFGTPIANHQGVQFMIADMAINLELSRLFTYRAAAEVDSYGVSSYNASIAKCFAADT 348
Query: 581 ANKAATDAVQVFGGNGFNTEYPVEKLMRDAKIYQIYEGTSQIQRLIISREI 429
AN AAT+A Q+FGG GFN EYPVEKLMRDAKIYQIYEGTSQIQR++I R +
Sbjct: 349 ANVAATNACQIFGGAGFNCEYPVEKLMRDAKIYQIYEGTSQIQRMVIGRTL 399
>AC006632-9|AAK85472.1| 409|Caenorhabditis elegans Hypothetical
protein F28A10.6 protein.
Length = 409
Score = 88.6 bits (210), Expect = 4e-18
Identities = 44/113 (38%), Positives = 73/113 (64%), Gaps = 1/113 (0%)
Frame = -3
Query: 758 RKTFGVPIARHQAVAFMLADMAIGVETARIAWQRAAWMVDHGQKNTV-MASVAKCHASEI 582
RK FG +A Q F LA++A + T+R+ + AA +D+ V + ++AK HA++
Sbjct: 290 RKQFGKSLADFQYNQFKLAELATKLYTSRLIVRNAAEQLDNDDPEKVALCAMAKLHATDN 349
Query: 581 ANKAATDAVQVFGGNGFNTEYPVEKLMRDAKIYQIYEGTSQIQRLIISREILT 423
A+Q+FGG GF +YPV++ +RD +++QI EGT+++ RL+ISR++LT
Sbjct: 350 CFDVVNGALQMFGGYGFLKDYPVQQYLRDIRVHQILEGTNEMMRLLISRDLLT 402
>AF127558-1|AAD21088.1| 419|Caenorhabditis elegans isovaleryl-CoA
dehydrogenase precursorprotein.
Length = 419
Score = 74.9 bits (176), Expect = 6e-14
Identities = 38/111 (34%), Positives = 59/111 (53%)
Frame = -3
Query: 761 ERKTFGVPIARHQAVAFMLADMAIGVETARIAWQRAAWMVDHGQKNTVMASVAKCHASEI 582
+R FG I Q + LADM + +R A D G + + + +E
Sbjct: 303 QRTAFGQKIGSFQLLQGKLADMYTTLNASRSYLYMVAKAADKGNVSNKDCAGVILYVAEK 362
Query: 581 ANKAATDAVQVFGGNGFNTEYPVEKLMRDAKIYQIYEGTSQIQRLIISREI 429
+ DA+Q+ GGNG+ +YP +L+RDAK+Y+I GTS+++RLII R +
Sbjct: 363 CTQVCLDAIQILGGNGYINDYPAGRLLRDAKLYEIGAGTSEVRRLIIGRAL 413
>AF039038-2|AAK21433.1| 419|Caenorhabditis elegans Hypothetical
protein K06A5.6 protein.
Length = 419
Score = 74.9 bits (176), Expect = 6e-14
Identities = 41/109 (37%), Positives = 60/109 (55%)
Frame = -3
Query: 761 ERKTFGVPIARHQAVAFMLADMAIGVETARIAWQRAAWMVDHGQKNTVMASVAKCHASEI 582
+R+ FG + Q + + + +E AR+ AA M +G A++AK AS++
Sbjct: 301 QREQFGQRLIDFQGMQHQIGQTRMEIEAARLLVYNAARMKQNGLPFVREAAMAKLFASQV 360
Query: 581 ANKAATDAVQVFGGNGFNTEYPVEKLMRDAKIYQIYEGTSQIQRLIISR 435
A A + V+ GG GF E+PVEK RD+KI IYEGTS IQ I++
Sbjct: 361 ATTATSKCVEWLGGVGFTKEFPVEKFYRDSKIGTIYEGTSNIQLNTIAK 409
>AF038605-3|AAB92016.1| 419|Caenorhabditis elegans Hypothetical
protein C02B10.1 protein.
Length = 419
Score = 74.9 bits (176), Expect = 6e-14
Identities = 38/111 (34%), Positives = 59/111 (53%)
Frame = -3
Query: 761 ERKTFGVPIARHQAVAFMLADMAIGVETARIAWQRAAWMVDHGQKNTVMASVAKCHASEI 582
+R FG I Q + LADM + +R A D G + + + +E
Sbjct: 303 QRTAFGQKIGSFQLLQGKLADMYTTLNASRSYLYMVAKAADKGNVSNKDCAGVILYVAEK 362
Query: 581 ANKAATDAVQVFGGNGFNTEYPVEKLMRDAKIYQIYEGTSQIQRLIISREI 429
+ DA+Q+ GGNG+ +YP +L+RDAK+Y+I GTS+++RLII R +
Sbjct: 363 CTQVCLDAIQILGGNGYINDYPAGRLLRDAKLYEIGAGTSEVRRLIIGRAL 413
>AC006625-5|AAK68275.1| 427|Caenorhabditis elegans Acyl coa
dehydrogenase protein1, isoform a protein.
Length = 427
Score = 74.5 bits (175), Expect = 7e-14
Identities = 41/111 (36%), Positives = 60/111 (54%)
Frame = -3
Query: 761 ERKTFGVPIARHQAVAFMLADMAIGVETARIAWQRAAWMVDHGQKNTVMASVAKCHASEI 582
+R+ FG + Q + +A +E AR+ AA M ++G A++AK AS++
Sbjct: 309 QREQFGQRLIDFQGLQHQIAQARTEIEAARLLVYNAARMKEYGIPYVREAAMAKLFASQV 368
Query: 581 ANKAATDAVQVFGGNGFNTEYPVEKLMRDAKIYQIYEGTSQIQRLIISREI 429
A + V+ GG GF E+P EK RDA I +IYEGTS IQ I++ I
Sbjct: 369 ATSTSAQCVKWLGGVGFTKEFPAEKFYRDAMIGEIYEGTSNIQLNTIAKLI 419
>U41279-9|AAL02437.1| 220|Caenorhabditis elegans Hypothetical
protein C17C3.12c protein.
Length = 220
Score = 61.7 bits (143), Expect = 6e-10
Identities = 36/105 (34%), Positives = 51/105 (48%)
Frame = -3
Query: 743 VPIARHQAVAFMLADMAIGVETARIAWQRAAWMVDHGQKNTVMASVAKCHASEIANKAAT 564
+ I + +A + +E AR+ A M D G AS+AK +A E+A K
Sbjct: 108 IVIGAQMGLQHQIAKIQTEIEAARLMVYNCARMKDCGMPFVKEASMAKYYAPEVACKTTK 167
Query: 563 DAVQVFGGNGFNTEYPVEKLMRDAKIYQIYEGTSQIQRLIISREI 429
++ GG GF + EK RDA + IYEGTS IQ I++ I
Sbjct: 168 QCIEWLGGVGFTKNFMAEKFYRDAVVGGIYEGTSNIQLNTIAKFI 212
>U41279-8|AAL02436.1| 307|Caenorhabditis elegans Hypothetical
protein C17C3.12b protein.
Length = 307
Score = 61.7 bits (143), Expect = 6e-10
Identities = 36/105 (34%), Positives = 51/105 (48%)
Frame = -3
Query: 743 VPIARHQAVAFMLADMAIGVETARIAWQRAAWMVDHGQKNTVMASVAKCHASEIANKAAT 564
+ I + +A + +E AR+ A M D G AS+AK +A E+A K
Sbjct: 195 IVIGAQMGLQHQIAKIQTEIEAARLMVYNCARMKDCGMPFVKEASMAKYYAPEVACKTTK 254
Query: 563 DAVQVFGGNGFNTEYPVEKLMRDAKIYQIYEGTSQIQRLIISREI 429
++ GG GF + EK RDA + IYEGTS IQ I++ I
Sbjct: 255 QCIEWLGGVGFTKNFMAEKFYRDAVVGGIYEGTSNIQLNTIAKFI 299
>Z66513-4|CAA91333.1| 409|Caenorhabditis elegans Hypothetical
protein F54D5.7 protein.
Length = 409
Score = 58.0 bits (134), Expect = 7e-09
Identities = 32/111 (28%), Positives = 55/111 (49%)
Frame = -3
Query: 761 ERKTFGVPIARHQAVAFMLADMAIGVETARIAWQRAAWMVDHGQKNTVMASVAKCHASEI 582
+R+ FG P+A++Q + +ADM + R + + D G+ + S+ K ++
Sbjct: 292 DRQQFGRPLAQNQLMQLKMADMLTEISLGLQGCLRVSRLKDEGKVQSEQISIIKRNSCGK 351
Query: 581 ANKAATDAVQVFGGNGFNTEYPVEKLMRDAKIYQIYEGTSQIQRLIISREI 429
A + A A + GGNG EY + + M + + YEGT + LI+ R I
Sbjct: 352 ALEVARKARDMLGGNGIVDEYHIMRHMVNLETVNTYEGTHDVHALILGRAI 402
>U28943-2|AAA68357.1| 613|Caenorhabditis elegans Hypothetical
protein E04F6.5a protein.
Length = 613
Score = 54.0 bits (124), Expect = 1e-07
Identities = 28/70 (40%), Positives = 44/70 (62%), Gaps = 1/70 (1%)
Frame = -3
Query: 644 VDHGQKNTVM-ASVAKCHASEIANKAATDAVQVFGGNGFNTEYPVEKLMRDAKIYQIYEG 468
+D G K + A++ K ASE A DA+QV GG GF E +E+++RD +I++I+EG
Sbjct: 372 MDRGIKEYQLEAAIGKVLASENAWLVCDDAIQVHGGMGFMRETGLERVLRDLRIFRIFEG 431
Query: 467 TSQIQRLIIS 438
+ + RL I+
Sbjct: 432 ANDVLRLFIA 441
>AL032621-7|CAJ30236.1| 608|Caenorhabditis elegans Hypothetical
protein Y45F3A.3b protein.
Length = 608
Score = 40.7 bits (91), Expect = 0.001
Identities = 18/62 (29%), Positives = 36/62 (58%)
Frame = -3
Query: 620 VMASVAKCHASEIANKAATDAVQVFGGNGFNTEYPVEKLMRDAKIYQIYEGTSQIQRLII 441
++ V K +A + A ++ ++ FGG G+ + + L+RDA++ I+EGT+ + L +
Sbjct: 406 LITPVLKLYAGKQAVPMVSEGIECFGGQGYMEDTGLPTLLRDAQVTPIWEGTTNVLSLDV 465
Query: 440 SR 435
R
Sbjct: 466 LR 467
>AL032621-6|CAA21490.1| 617|Caenorhabditis elegans Hypothetical
protein Y45F3A.3a protein.
Length = 617
Score = 40.7 bits (91), Expect = 0.001
Identities = 18/62 (29%), Positives = 36/62 (58%)
Frame = -3
Query: 620 VMASVAKCHASEIANKAATDAVQVFGGNGFNTEYPVEKLMRDAKIYQIYEGTSQIQRLII 441
++ V K +A + A ++ ++ FGG G+ + + L+RDA++ I+EGT+ + L +
Sbjct: 415 LITPVLKLYAGKQAVPMVSEGIECFGGQGYMEDTGLPTLLRDAQVTPIWEGTTNVLSLDV 474
Query: 440 SR 435
R
Sbjct: 475 LR 476
>Z67736-2|CAA91535.1| 226|Caenorhabditis elegans Hypothetical
protein F57G12.2 protein.
Length = 226
Score = 31.5 bits (68), Expect = 0.68
Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 5/55 (9%)
Frame = -1
Query: 658 APHGWLTTDKRIQLWRQWPSVTLRKSLTR----QPLMRSKCSEETASTP-NTQSR 509
APH + D I++ Q+PS ++S+ R +P++RS S E P N Q R
Sbjct: 150 APHEIINMDSHIRMTPQFPSAKAKRSMVRKLAQKPIIRSMTSTECGIFPINMQCR 204
>U67954-1|AAB52605.2| 826|Caenorhabditis elegans Hypothetical
protein F41D9.1 protein.
Length = 826
Score = 31.1 bits (67), Expect = 0.89
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = +3
Query: 519 VFGVEAVSSEHLDRISGCLVSDFRSVTLGH*RHNCILLSVVNHP 650
++G EAVS E + I G L + FR + R N + S+ HP
Sbjct: 590 IYGDEAVSPEITEYIRGRLANSFRQIMDHGIRENALYTSMAYHP 633
>AF016427-8|AAB65355.1| 513|Caenorhabditis elegans Hypothetical
protein F32D1.9 protein.
Length = 513
Score = 30.3 bits (65), Expect = 1.6
Identities = 19/47 (40%), Positives = 24/47 (51%)
Frame = -2
Query: 552 SVRRKRLQHRIPSRETDAGRQDIPNLRRNLADSKAHHIKRDPHRSNS 412
S RRKR + R P R+ D R+D RR +S +R HRS S
Sbjct: 394 SSRRKRSRSRSPHRDRDRDRRDRETRRRGERESDRTSSRR--HRSRS 438
>U55363-8|AAA97966.1| 829|Caenorhabditis elegans Germinal center
kinase family protein2 protein.
Length = 829
Score = 28.3 bits (60), Expect = 6.3
Identities = 16/50 (32%), Positives = 25/50 (50%)
Frame = -1
Query: 556 SKCSEETASTPNTQSRN*CGTPRYTKSTKEPRRFKGSSYQERSSPQQLKP 407
++C E+ +S+PNT S + TP T PR + ER+ P + P
Sbjct: 343 ARCLEQLSSSPNTSSESDRRTP-----TATPRSLNRGYHSERTLPAKEMP 387
>AC006733-3|AAF60488.2| 372|Caenorhabditis elegans Hypothetical
protein Y32H12A.1 protein.
Length = 372
Score = 27.9 bits (59), Expect = 8.3
Identities = 18/69 (26%), Positives = 29/69 (42%), Gaps = 1/69 (1%)
Frame = +1
Query: 478 IWYILASRISFSTGYSVLKPFPP-NTWTASVAALLAISEA*HLATDAITVFFCPWSTIHA 654
+W I+++ +S+L + N SV LL I VFF P + +
Sbjct: 74 LWLIISNYQKLHKTFSILLTYTLINDCLISVTLLLTIKRIVQCHETLAMVFFGPCTFVST 133
Query: 655 ARCHAIRAV 681
+ CH + AV
Sbjct: 134 SFCHVLDAV 142
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,646,831
Number of Sequences: 27780
Number of extensions: 378943
Number of successful extensions: 891
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 832
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 890
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1819579054
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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