Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc11d23
         (763 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    23   2.3  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    23   2.3  
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    22   5.4  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    22   7.1  
AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    21   9.4  

>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +3

Query: 702 GKHERYRLVSRYGHSE 749
           G H++ RLVSR+G  +
Sbjct: 345 GNHDQLRLVSRFGEEK 360


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +3

Query: 702 GKHERYRLVSRYGHSE 749
           G H++ RLVSR+G  +
Sbjct: 345 GNHDQLRLVSRFGEEK 360


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 11/44 (25%), Positives = 16/44 (36%)
 Frame = +1

Query: 547 NTWTASVAALLAISEA*HLATDAITVFFCPWSTIHAARCHAIRA 678
           N W +      A      +    +  FF  W+  HA R  A+ A
Sbjct: 268 NHWDSGRRKSAAQRNVIRMLVAVVVAFFICWAPFHAQRLLAVYA 311


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = -2

Query: 480 NLRRNLADSKAHHIKRDPHRSNSN 409
           N   N  + +AHH  +  +R N+N
Sbjct: 440 NQNNNQHNDQAHHSSKSNNRHNNN 463


>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -1

Query: 352 VMGWGHRLNSIVLFHI 305
           V+GWGH   + +L HI
Sbjct: 294 VLGWGHTSFNGMLSHI 309


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 216,955
Number of Sequences: 438
Number of extensions: 4954
Number of successful extensions: 10
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 23789892
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)