Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc11d20
(368 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1177 + 35147036-35147038,35147128-35147220,35147322-351474... 154 2e-38
07_03_0361 + 17215312-17216217 28 2.6
09_04_0042 - 14055885-14056142,14057508-14057774,14057859-140592... 27 3.5
08_02_1601 - 28138206-28138597,28138928-28139054,28139150-281399... 27 3.5
11_01_0658 + 5342508-5343602,5343697-5343764,5343994-5344042,534... 27 4.6
03_05_0728 - 27174157-27174408,27175316-27175364,27175454-271755... 27 4.6
09_04_0040 - 14029565-14029810,14030904-14031182,14032056-14032832 27 6.1
05_01_0554 + 4856131-4856605,4858051-4858098,4860611-4860792,486... 27 6.1
03_02_0054 + 5292167-5292336,5292434-5292526,5292828-5293003,529... 27 6.1
02_04_0258 + 21339682-21339806,21340635-21340730,21340905-213409... 27 6.1
>01_06_1177 +
35147036-35147038,35147128-35147220,35147322-35147406,
35147588-35147760
Length = 117
Score = 154 bits (374), Expect = 2e-38
Identities = 69/109 (63%), Positives = 88/109 (80%)
Frame = -3
Query: 336 MTRKRRNGGRAKHGRGHVKAVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDINDASVYP 157
MT KRRNGGR KHGRGHVK +RC+NCA+C PKDKAIK+F +RNIVE AA+RD+ +A V+
Sbjct: 1 MTFKRRNGGRNKHGRGHVKYIRCSNCAKCCPKDKAIKRFQVRNIVEQAAIRDVQEACVHD 60
Query: 156 MFQLPKLYAKLHYCVSCAIHSKVVRNRSKKDRRIRTPPKSNFPRDMSRP 10
+ LPKLYAK+H+CVSCAIH+ +VR RS+++RR R PP+ F R + P
Sbjct: 61 GYVLPKLYAKVHHCVSCAIHAHIVRVRSRENRRDRRPPE-RFRRRVPDP 108
>07_03_0361 + 17215312-17216217
Length = 301
Score = 27.9 bits (59), Expect = 2.6
Identities = 22/99 (22%), Positives = 45/99 (45%), Gaps = 1/99 (1%)
Frame = -3
Query: 357 TGSEVRNMTRKRRNGGRAKHGRGHVKAVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDI 178
+G+E T K++ GG G G + V+ + +A K+ ++ +VE AA +
Sbjct: 51 SGTEQAPETTKKKGGGG---GGGDERVVQVHSAEELDGALRAAKERLV--VVEFAASHSV 105
Query: 177 NDASVYP-MFQLPKLYAKLHYCVSCAIHSKVVRNRSKKD 64
N + +YP M +L + + + + S R +++
Sbjct: 106 NSSRIYPCMVELSRTCGDVDFLLVMGDESDATRELCRRE 144
>09_04_0042 -
14055885-14056142,14057508-14057774,14057859-14059292,
14059378-14059539,14059642-14059768,14059869-14060200,
14060289-14061083,14061379-14061714,14061791-14062730,
14063338-14063588
Length = 1633
Score = 27.5 bits (58), Expect = 3.5
Identities = 16/58 (27%), Positives = 28/58 (48%)
Frame = +1
Query: 181 ISDRRRFYDVPNHELFDSLVLWHAPRAVCASHSFNVTTSMLGASSITALTSHVSNLRS 354
+S+ R NH D+ H P A+C HS ++ + LG+ +T ++L+S
Sbjct: 622 VSEHREVESPANHIKGDNSFHSHHPNALCNVHSVSLGNN-LGSMGVTPYYDPCNSLQS 678
>08_02_1601 -
28138206-28138597,28138928-28139054,28139150-28139914,
28140714-28140929,28141433-28141903
Length = 656
Score = 27.5 bits (58), Expect = 3.5
Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Frame = +1
Query: 169 GIVNISDRRRFYDVPNHELFDSLVLWHAPRAVCASHSFN--VTTSMLGASSIT 321
GI + D +YD + LF+ L+ P A +SH+F+ V T + S+ T
Sbjct: 439 GIDMVDDGMPYYDAMDDNLFNDLLSSVQPSAGSSSHAFSGPVLTQEVNNSTYT 491
>11_01_0658 +
5342508-5343602,5343697-5343764,5343994-5344042,
5344217-5344333,5344438-5344506,5344631-5344725,
5345580-5345658,5346499-5346563,5347368-5347461,
5347675-5347744,5348363-5349357
Length = 931
Score = 27.1 bits (57), Expect = 4.6
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = -2
Query: 103 HPQQSCQEQIEERQKNPYSSQE 38
+PQQS Q+Q EE+Q P SS +
Sbjct: 616 NPQQSQQQQPEEQQSIPQSSNQ 637
>03_05_0728 -
27174157-27174408,27175316-27175364,27175454-27175536,
27175673-27175753,27175838-27175894,27176103-27176202,
27176280-27176350,27176427-27176567,27176657-27176863,
27177442-27177612,27177735-27177815,27177887-27177940,
27178040-27178154,27178302-27178441,27178976-27179197,
27179278-27179376,27179461-27179580,27179776-27179981,
27180072-27180249,27180426-27180486,27180587-27180696,
27180765-27180896,27181124-27181165,27181592-27181762,
27181806-27181808,27181848-27181974,27182130-27182164,
27182982-27183083,27183167-27183224,27183314-27183415,
27183513-27183659,27183744-27183880,27183973-27184122,
27184234-27184393,27184930-27185075,27185162-27185305,
27185535-27185663,27186376-27186420,27187103-27187192,
27187473-27187475
Length = 1506
Score = 27.1 bits (57), Expect = 4.6
Identities = 10/34 (29%), Positives = 18/34 (52%)
Frame = -3
Query: 105 AIHSKVVRNRSKKDRRIRTPPKSNFPRDMSRPPG 4
+I V ++ ++++T FP+DM PPG
Sbjct: 74 SIKDNEVHVQTSNGKKVKTNKSKVFPKDMEAPPG 107
>09_04_0040 - 14029565-14029810,14030904-14031182,14032056-14032832
Length = 433
Score = 26.6 bits (56), Expect = 6.1
Identities = 15/50 (30%), Positives = 20/50 (40%)
Frame = -3
Query: 333 TRKRRNGGRAKHGRGHVKAVRCTNCARCVPKDKAIKKFVIRNIVEAAAVR 184
T RR A G G AV C +CA P + A+ + + A R
Sbjct: 78 TSSRRTDPPAGAGAGEDDAVACPSCAEPFPSELAVSDHLDGCLAAAGGAR 127
>05_01_0554 +
4856131-4856605,4858051-4858098,4860611-4860792,
4861409-4863136
Length = 810
Score = 26.6 bits (56), Expect = 6.1
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = +1
Query: 187 DRRRFYDVPNHELFD 231
DR FYD PN+E FD
Sbjct: 354 DRTLFYDEPNYEAFD 368
>03_02_0054 +
5292167-5292336,5292434-5292526,5292828-5293003,
5293076-5293122,5293732-5293801,5293960-5294186,
5294274-5294327,5294470-5294545,5294679-5294884
Length = 372
Score = 26.6 bits (56), Expect = 6.1
Identities = 11/24 (45%), Positives = 20/24 (83%)
Frame = +1
Query: 292 TSMLGASSITALTSHVSNLRSGEQ 363
+SML +S+++++S +SNLRS +Q
Sbjct: 164 SSMLRRASVSSISSFLSNLRSHDQ 187
>02_04_0258 +
21339682-21339806,21340635-21340730,21340905-21340980,
21341085-21341143,21341280-21341380,21341447-21341773,
21341861-21342021,21342100-21342303,21342735-21342966,
21343629-21344239
Length = 663
Score = 26.6 bits (56), Expect = 6.1
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = -3
Query: 51 TPPKSNFPRDMSRPPG 4
TPP NF D +RPPG
Sbjct: 613 TPPNFNFGDDRARPPG 628
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,981,164
Number of Sequences: 37544
Number of extensions: 187168
Number of successful extensions: 549
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 537
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 549
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 576724416
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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