Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc11d11
         (296 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC18E5.05c |||RNA polymerase II elongator complex subunit|Schi...    25   3.1  
SPBC1709.15c |cft2||cleavage factor two Cft2/polyadenylation fac...    23   9.6  
SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|c...    23   9.6  

>SPBC18E5.05c |||RNA polymerase II elongator complex
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 314

 Score = 24.6 bits (51), Expect = 3.1
 Identities = 12/50 (24%), Positives = 23/50 (46%)
 Frame = -3

Query: 240 TCKTQSRDDVICFSKLNLRNDVICLNSLYE*NSTCKTQSRDDVICFSKLN 91
           T + ++ + + CF        V  L  LYE  S+ +TQ +  ++    +N
Sbjct: 52  TLEKEAPEGIDCFLYATSWEKVKSLKELYEHISSWRTQGKQHIVMIDTIN 101


>SPBC1709.15c |cft2||cleavage factor two Cft2/polyadenylation factor
           CPSF-73 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 797

 Score = 23.0 bits (47), Expect = 9.6
 Identities = 8/12 (66%), Positives = 12/12 (100%)
 Frame = +1

Query: 10  SLDCGFTRRILL 45
           +L+CGF++RILL
Sbjct: 323 TLECGFSQRILL 334


>SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1315

 Score = 23.0 bits (47), Expect = 9.6
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = -2

Query: 97  TKFKK*CHLFFKTELALRVEFY 32
           T FKK  H+F   +L L VE Y
Sbjct: 848 TLFKKAAHVFTPEDLRLAVEEY 869


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,001,762
Number of Sequences: 5004
Number of extensions: 16674
Number of successful extensions: 19
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 73880280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)