Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc11d11
         (296 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT024453-1|ABC86515.1|  774|Drosophila melanogaster GH09076p pro...    26   9.7  
AJ000261-1|CAA03977.1|  774|Drosophila melanogaster D19B protein.      26   9.7  
AE014296-1093|AAF50678.1|  774|Drosophila melanogaster CG10270-P...    26   9.7  

>BT024453-1|ABC86515.1|  774|Drosophila melanogaster GH09076p
           protein.
          Length = 774

 Score = 25.8 bits (54), Expect = 9.7
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = -3

Query: 138 CKTQSRDDVICFSKLNLRNDVICFSKLNSLYE*NSTCKTTIK 13
           C + S +    F K NL N  +CFSKLN L++    C  +++
Sbjct: 41  CTSLSVEQADGFPK-NLCN--VCFSKLNDLHDFQKQCVDSVQ 79


>AJ000261-1|CAA03977.1|  774|Drosophila melanogaster D19B protein.
          Length = 774

 Score = 25.8 bits (54), Expect = 9.7
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = -3

Query: 138 CKTQSRDDVICFSKLNLRNDVICFSKLNSLYE*NSTCKTTIK 13
           C + S +    F K NL N  +CFSKLN L++    C  +++
Sbjct: 41  CTSLSVEQADGFPK-NLCN--VCFSKLNDLHDFQKQCVDSVQ 79


>AE014296-1093|AAF50678.1|  774|Drosophila melanogaster CG10270-PA
           protein.
          Length = 774

 Score = 25.8 bits (54), Expect = 9.7
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = -3

Query: 138 CKTQSRDDVICFSKLNLRNDVICFSKLNSLYE*NSTCKTTIK 13
           C + S +    F K NL N  +CFSKLN L++    C  +++
Sbjct: 41  CTSLSVEQADGFPK-NLCN--VCFSKLNDLHDFQKQCVDSVQ 79


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,755,844
Number of Sequences: 53049
Number of extensions: 146023
Number of successful extensions: 271
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 271
length of database: 24,988,368
effective HSP length: 73
effective length of database: 21,115,791
effective search space used: 527894775
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)