Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc11d11
         (296 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435325-1|ABD92640.1|  160|Apis mellifera OBP7 protein.               22   1.4  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    21   4.2  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              20   5.6  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    19   9.8  

>DQ435325-1|ABD92640.1|  160|Apis mellifera OBP7 protein.
          Length = 160

 Score = 22.2 bits (45), Expect = 1.4
 Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
 Frame = -3

Query: 144 STCKTQSRDDVICFSKLNLRNDVICFSK-LNSLYE*NSTCKTTIK 13
           S C   ++    C + LN    +ICFSK L+ +YE   T + T+K
Sbjct: 116 SECINANKSTDKCENGLNF---IICFSKLLSDMYE--DTFEDTLK 155



 Score = 21.0 bits (42), Expect = 3.2
 Identities = 9/15 (60%), Positives = 12/15 (80%), Gaps = 1/15 (6%)
 Frame = -3

Query: 291 NDVICFSK-LNSLYE 250
           N +ICFSK L+ +YE
Sbjct: 133 NFIICFSKLLSDMYE 147


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
            receptor protein.
          Length = 1040

 Score = 20.6 bits (41), Expect = 4.2
 Identities = 6/17 (35%), Positives = 12/17 (70%)
 Frame = +2

Query: 101  EKQMTSSLDCVLHVEFY 151
            +K +T+++DC    E+Y
Sbjct: 956  KKHITTTIDCSTQSEYY 972


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 20.2 bits (40), Expect = 5.6
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = -3

Query: 126 SRDDVICFSKLNLRNDVICFSKLNSL 49
           S DD     KLN+    + FSKL S+
Sbjct: 281 SYDDTDGDGKLNVNEFYMAFSKLYSV 306


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 19.4 bits (38), Expect = 9.8
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = -2

Query: 178 CHLFKLALRVEFYV*NTI 125
           C +F  A  VEF   NTI
Sbjct: 301 CTIFLFAAMVEFAFVNTI 318


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 58,866
Number of Sequences: 438
Number of extensions: 859
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 49
effective length of database: 124,881
effective search space used:  6119169
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)