Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc11d10
         (300 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0317 - 2365493-2365786,2365825-2365953                           43   4e-05
12_01_0323 - 2459854-2460306                                           42   9e-05
01_01_0263 + 2136858-2137331                                           42   9e-05

>11_01_0317 - 2365493-2365786,2365825-2365953
          Length = 140

 Score = 43.2 bits (97), Expect = 4e-05
 Identities = 21/49 (42%), Positives = 30/49 (61%)
 Frame = -3

Query: 154 HPSKVVRGHYKGQQVXKLMQVYSKKSVVYXERXQXEXAXXATAXVGIXP 8
           H   VVRG YKG++  K++QVY ++ V++ ER   E    +T  VGI P
Sbjct: 40  HKYNVVRGSYKGRE-GKVVQVYRRRWVIHVERITREKVNGSTVNVGIHP 87



 Score = 41.9 bits (94), Expect = 9e-05
 Identities = 18/30 (60%), Positives = 23/30 (76%)
 Frame = -3

Query: 226 KKFVVFFEXIQREKXNGATAXVGIHPSKVV 137
           +++V+  E I REK NG+T  VGIHPSKVV
Sbjct: 62  RRWVIHVERITREKVNGSTVNVGIHPSKVV 91


>12_01_0323 - 2459854-2460306
          Length = 150

 Score = 41.9 bits (94), Expect = 9e-05
 Identities = 18/30 (60%), Positives = 23/30 (76%)
 Frame = -3

Query: 226 KKFVVFFEXIQREKXNGATAXVGIHPSKVV 137
           +++V+  E I REK NG+T  VGIHPSKVV
Sbjct: 75  RRWVIHVERITREKVNGSTVNVGIHPSKVV 104



 Score = 41.5 bits (93), Expect = 1e-04
 Identities = 20/46 (43%), Positives = 30/46 (65%)
 Frame = -3

Query: 145 KVVRGHYKGQQVXKLMQVYSKKSVVYXERXQXEXAXXATAXVGIXP 8
           +VVRG YKG++  K++QVY ++ V++ ER   E    +T  VGI P
Sbjct: 56  QVVRGSYKGRE-GKVVQVYRRRWVIHVERITREKVNGSTVNVGIHP 100


>01_01_0263 + 2136858-2137331
          Length = 157

 Score = 41.9 bits (94), Expect = 9e-05
 Identities = 18/30 (60%), Positives = 23/30 (76%)
 Frame = -3

Query: 226 KKFVVFFEXIQREKXNGATAXVGIHPSKVV 137
           +++V+  E I REK NG+T  VGIHPSKVV
Sbjct: 75  RRWVIHVERITREKVNGSTVNVGIHPSKVV 104



 Score = 41.5 bits (93), Expect = 1e-04
 Identities = 20/46 (43%), Positives = 30/46 (65%)
 Frame = -3

Query: 145 KVVRGHYKGQQVXKLMQVYSKKSVVYXERXQXEXAXXATAXVGIXP 8
           +VVRG YKG++  K++QVY ++ V++ ER   E    +T  VGI P
Sbjct: 56  QVVRGSYKGRE-GKVVQVYRRRWVIHVERITREKVNGSTVNVGIHP 100


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,062,535
Number of Sequences: 37544
Number of extensions: 64887
Number of successful extensions: 122
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 339576272
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)