Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc11d10
         (300 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X69392-1|CAA49189.1|  145|Homo sapiens ribosomal protein L26 pro...    62   3e-10
L07287-1|AAA60279.1|  145|Homo sapiens ribosomal protein L26 pro...    62   3e-10
CR456828-1|CAG33109.1|  145|Homo sapiens RPL26 protein.                62   3e-10
BC071664-1|AAH71664.1|  145|Homo sapiens RPL26 protein protein.        62   3e-10
BC070192-1|AAH70192.1|  145|Homo sapiens ribosomal protein L26-l...    62   3e-10
BC017360-1|AAH17360.1|  145|Homo sapiens ribosomal protein L26-l...    62   3e-10
AB061829-1|BAB79467.1|  145|Homo sapiens ribosomal protein L26 p...    62   3e-10

>X69392-1|CAA49189.1|  145|Homo sapiens ribosomal protein L26
           protein.
          Length = 145

 Score = 62.1 bits (144), Expect = 3e-10
 Identities = 28/46 (60%), Positives = 33/46 (71%)
 Frame = -3

Query: 145 KVVRGHYKGQQVXKLMQVYSKKSVVYXERXQXEXAXXATAXVGIXP 8
           +VVRGHYKGQQ+ K++QVY KK V+Y ER Q E A   T  VGI P
Sbjct: 56  QVVRGHYKGQQIGKVVQVYRKKYVIYIERVQREKANGTTVHVGIHP 101



 Score = 50.4 bits (115), Expect = 1e-06
 Identities = 22/43 (51%), Positives = 29/43 (67%)
 Frame = -3

Query: 265 KANRLAK*CRCICKKFVVFFEXIQREKXNGATAXVGIHPSKVV 137
           K  ++ K  +   KK+V++ E +QREK NG T  VGIHPSKVV
Sbjct: 63  KGQQIGKVVQVYRKKYVIYIERVQREKANGTTVHVGIHPSKVV 105


>L07287-1|AAA60279.1|  145|Homo sapiens ribosomal protein L26
           protein.
          Length = 145

 Score = 62.1 bits (144), Expect = 3e-10
 Identities = 28/46 (60%), Positives = 33/46 (71%)
 Frame = -3

Query: 145 KVVRGHYKGQQVXKLMQVYSKKSVVYXERXQXEXAXXATAXVGIXP 8
           +VVRGHYKGQQ+ K++QVY KK V+Y ER Q E A   T  VGI P
Sbjct: 56  QVVRGHYKGQQIGKVVQVYRKKYVIYIERVQREKANGTTVHVGIHP 101



 Score = 50.4 bits (115), Expect = 1e-06
 Identities = 22/43 (51%), Positives = 29/43 (67%)
 Frame = -3

Query: 265 KANRLAK*CRCICKKFVVFFEXIQREKXNGATAXVGIHPSKVV 137
           K  ++ K  +   KK+V++ E +QREK NG T  VGIHPSKVV
Sbjct: 63  KGQQIGKVVQVYRKKYVIYIERVQREKANGTTVHVGIHPSKVV 105


>CR456828-1|CAG33109.1|  145|Homo sapiens RPL26 protein.
          Length = 145

 Score = 62.1 bits (144), Expect = 3e-10
 Identities = 28/46 (60%), Positives = 33/46 (71%)
 Frame = -3

Query: 145 KVVRGHYKGQQVXKLMQVYSKKSVVYXERXQXEXAXXATAXVGIXP 8
           +VVRGHYKGQQ+ K++QVY KK V+Y ER Q E A   T  VGI P
Sbjct: 56  QVVRGHYKGQQIGKVVQVYRKKYVIYIERVQREKANGTTVHVGIHP 101



 Score = 50.4 bits (115), Expect = 1e-06
 Identities = 22/43 (51%), Positives = 29/43 (67%)
 Frame = -3

Query: 265 KANRLAK*CRCICKKFVVFFEXIQREKXNGATAXVGIHPSKVV 137
           K  ++ K  +   KK+V++ E +QREK NG T  VGIHPSKVV
Sbjct: 63  KGQQIGKVVQVYRKKYVIYIERVQREKANGTTVHVGIHPSKVV 105


>BC071664-1|AAH71664.1|  145|Homo sapiens RPL26 protein protein.
          Length = 145

 Score = 62.1 bits (144), Expect = 3e-10
 Identities = 28/46 (60%), Positives = 33/46 (71%)
 Frame = -3

Query: 145 KVVRGHYKGQQVXKLMQVYSKKSVVYXERXQXEXAXXATAXVGIXP 8
           +VVRGHYKGQQ+ K++QVY KK V+Y ER Q E A   T  VGI P
Sbjct: 56  QVVRGHYKGQQIGKVVQVYRKKYVIYIERVQREKANGTTVHVGIHP 101



 Score = 50.4 bits (115), Expect = 1e-06
 Identities = 22/43 (51%), Positives = 29/43 (67%)
 Frame = -3

Query: 265 KANRLAK*CRCICKKFVVFFEXIQREKXNGATAXVGIHPSKVV 137
           K  ++ K  +   KK+V++ E +QREK NG T  VGIHPSKVV
Sbjct: 63  KGQQIGKVVQVYRKKYVIYIERVQREKANGTTVHVGIHPSKVV 105


>BC070192-1|AAH70192.1|  145|Homo sapiens ribosomal protein L26-like
           1 protein.
          Length = 145

 Score = 62.1 bits (144), Expect = 3e-10
 Identities = 28/46 (60%), Positives = 33/46 (71%)
 Frame = -3

Query: 145 KVVRGHYKGQQVXKLMQVYSKKSVVYXERXQXEXAXXATAXVGIXP 8
           +VVRGHYKGQQ+ K++QVY KK V+Y ER Q E A   T  VGI P
Sbjct: 56  QVVRGHYKGQQIGKVVQVYRKKYVIYIERVQREKANGTTVHVGIHP 101



 Score = 50.4 bits (115), Expect = 1e-06
 Identities = 22/43 (51%), Positives = 29/43 (67%)
 Frame = -3

Query: 265 KANRLAK*CRCICKKFVVFFEXIQREKXNGATAXVGIHPSKVV 137
           K  ++ K  +   KK+V++ E +QREK NG T  VGIHPSKVV
Sbjct: 63  KGQQIGKVVQVYRKKYVIYIERVQREKANGTTVHVGIHPSKVV 105


>BC017360-1|AAH17360.1|  145|Homo sapiens ribosomal protein L26-like
           1 protein.
          Length = 145

 Score = 62.1 bits (144), Expect = 3e-10
 Identities = 28/46 (60%), Positives = 33/46 (71%)
 Frame = -3

Query: 145 KVVRGHYKGQQVXKLMQVYSKKSVVYXERXQXEXAXXATAXVGIXP 8
           +VVRGHYKGQQ+ K++QVY KK V+Y ER Q E A   T  VGI P
Sbjct: 56  QVVRGHYKGQQIGKVVQVYRKKYVIYIERVQREKANGTTVHVGIHP 101



 Score = 50.4 bits (115), Expect = 1e-06
 Identities = 22/43 (51%), Positives = 29/43 (67%)
 Frame = -3

Query: 265 KANRLAK*CRCICKKFVVFFEXIQREKXNGATAXVGIHPSKVV 137
           K  ++ K  +   KK+V++ E +QREK NG T  VGIHPSKVV
Sbjct: 63  KGQQIGKVVQVYRKKYVIYIERVQREKANGTTVHVGIHPSKVV 105


>AB061829-1|BAB79467.1|  145|Homo sapiens ribosomal protein L26
           protein.
          Length = 145

 Score = 62.1 bits (144), Expect = 3e-10
 Identities = 28/46 (60%), Positives = 33/46 (71%)
 Frame = -3

Query: 145 KVVRGHYKGQQVXKLMQVYSKKSVVYXERXQXEXAXXATAXVGIXP 8
           +VVRGHYKGQQ+ K++QVY KK V+Y ER Q E A   T  VGI P
Sbjct: 56  QVVRGHYKGQQIGKVVQVYRKKYVIYIERVQREKANGTTVHVGIHP 101



 Score = 50.4 bits (115), Expect = 1e-06
 Identities = 22/43 (51%), Positives = 29/43 (67%)
 Frame = -3

Query: 265 KANRLAK*CRCICKKFVVFFEXIQREKXNGATAXVGIHPSKVV 137
           K  ++ K  +   KK+V++ E +QREK NG T  VGIHPSKVV
Sbjct: 63  KGQQIGKVVQVYRKKYVIYIERVQREKANGTTVHVGIHPSKVV 105


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,609,737
Number of Sequences: 237096
Number of extensions: 370800
Number of successful extensions: 878
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 846
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 878
length of database: 76,859,062
effective HSP length: 76
effective length of database: 58,839,766
effective search space used: 1353314618
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)