Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc11d05
(863 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces... 105 6e-24
SPAC683.02c ||SPAC694.01c|zf-CCHC type zinc finger protein|Schiz... 57 3e-09
SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit Air1|Schi... 54 3e-08
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc... 44 3e-05
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 35 0.017
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 35 0.017
SPCC825.02 |||glucosidase II Gtb1 |Schizosaccharomyces pombe|chr... 30 0.37
SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1 |Schizos... 30 0.49
SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFII... 29 0.85
SPBC31F10.10c |||zf-MYND type zinc finger protein|Schizosaccharo... 27 3.4
SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family |Schizos... 27 4.5
SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyc... 27 4.5
SPBC1718.07c |zfs1|moc4|transcription factor Zfs1 |Schizosacchar... 26 6.0
SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyce... 26 7.9
SPAC23H4.15 |||ribosome biogenesis protein Tsr1 |Schizosaccharom... 26 7.9
>SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 179
Score = 105 bits (253), Expect = 6e-24
Identities = 49/117 (41%), Positives = 64/117 (54%), Gaps = 13/117 (11%)
Frame = -2
Query: 847 CFKCNRTGHFARDCKE--EADRCYRCNGTGHIARECAQSPDE---PSCYNCNKTGHIARN 683
C+ CN+TGH A +C E + CY C GH+ R+C SP+ CY C + GHIAR+
Sbjct: 38 CYNCNQTGHKASECTEPQQEKTCYACGTAGHLVRDCPSSPNPRQGAECYKCGRVGHIARD 97
Query: 682 CPEGGRES--------ATQTCYNCNKSGHISRNCPDGTKTCYVCGKPGHISRECDEA 536
C G++S + CY C GH +R+C G K CY CGK GH S EC +A
Sbjct: 98 CRTNGQQSGGRFGGHRSNMNCYACGSYGHQARDCTMGVK-CYSCGKIGHRSFECQQA 153
Score = 99.5 bits (237), Expect = 5e-22
Identities = 44/119 (36%), Positives = 60/119 (50%), Gaps = 13/119 (10%)
Frame = -2
Query: 862 RQREKCFKCNRTGHFARDCKEEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARN 683
R +C+ C GH AR+C + CY CN TGH A EC + E +CY C GH+ R+
Sbjct: 14 RPGPRCYNCGENGHQARECTK-GSICYNCNQTGHKASECTEPQQEKTCYACGTAGHLVRD 72
Query: 682 CPEGGRESATQTCYNCNKSGHISRNC-PDGTKT------------CYVCGKPGHISREC 545
CP CY C + GHI+R+C +G ++ CY CG GH +R+C
Sbjct: 73 CPSSPNPRQGAECYKCGRVGHIARDCRTNGQQSGGRFGGHRSNMNCYACGSYGHQARDC 131
Score = 76.6 bits (180), Expect = 4e-15
Identities = 38/99 (38%), Positives = 48/99 (48%), Gaps = 13/99 (13%)
Frame = -2
Query: 862 RQREKCFKCNRTGHFARDCKEEADR-------------CYRCNGTGHIARECAQSPDEPS 722
RQ +C+KC R GH ARDC+ + CY C GH AR+C
Sbjct: 80 RQGAECYKCGRVGHIARDCRTNGQQSGGRFGGHRSNMNCYACGSYGHQARDCTMGV---K 136
Query: 721 CYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNC 605
CY+C K GH + C + S Q CY CN+ GHI+ NC
Sbjct: 137 CYSCGKIGHRSFECQQA---SDGQLCYKCNQPGHIAVNC 172
Score = 74.1 bits (174), Expect = 2e-14
Identities = 31/68 (45%), Positives = 39/68 (57%), Gaps = 2/68 (2%)
Frame = -2
Query: 727 PSCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNC--PDGTKTCYVCGKPGHIS 554
P CYNC + GH AR C +G CYNCN++GH + C P KTCY CG GH+
Sbjct: 17 PRCYNCGENGHQARECTKGS------ICYNCNQTGHKASECTEPQQEKTCYACGTAGHLV 70
Query: 553 RECDEARN 530
R+C + N
Sbjct: 71 RDCPSSPN 78
>SPAC683.02c ||SPAC694.01c|zf-CCHC type zinc finger
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 218
Score = 57.2 bits (132), Expect = 3e-09
Identities = 29/99 (29%), Positives = 47/99 (47%), Gaps = 8/99 (8%)
Frame = -2
Query: 862 RQREK-CFKCNRTGHFARDCKEEADR---CYRCNGTGHIARECA-QSPDE-PSCYNCNKT 701
R R+K CF C + GH +DC E D C+RC H C+ + P + C+ C++
Sbjct: 73 RNRDKFCFACRQQGHIVQDCPEAKDNVSICFRCGSKEHSLNACSKKGPLKFAKCFICHEN 132
Query: 700 GHIARNCPEG--GRESATQTCYNCNKSGHISRNCPDGTK 590
GH++ C + G C C+ H++++C K
Sbjct: 133 GHLSGQCEQNPKGLYPKGGCCKFCSSVHHLAKDCDQVNK 171
Score = 48.4 bits (110), Expect = 1e-06
Identities = 21/76 (27%), Positives = 35/76 (46%), Gaps = 4/76 (5%)
Frame = -2
Query: 754 RECAQSPDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNC----PDGTKT 587
R Q + C+ C + GHI ++CPE + C+ C H C P
Sbjct: 68 RRINQRNRDKFCFACRQQGHIVQDCPEA--KDNVSICFRCGSKEHSLNACSKKGPLKFAK 125
Query: 586 CYVCGKPGHISRECDE 539
C++C + GH+S +C++
Sbjct: 126 CFICHENGHLSGQCEQ 141
Score = 41.1 bits (92), Expect = 2e-04
Identities = 18/74 (24%), Positives = 36/74 (48%), Gaps = 9/74 (12%)
Frame = -2
Query: 847 CFKCNRTGHFARDCKEEAD----RCYRCNGTGHIARECAQSPDE--PS---CYNCNKTGH 695
CF+C H C ++ +C+ C+ GH++ +C Q+P P C C+ H
Sbjct: 102 CFRCGSKEHSLNACSKKGPLKFAKCFICHENGHLSGQCEQNPKGLYPKGGCCKFCSSVHH 161
Query: 694 IARNCPEGGRESAT 653
+A++C + ++ +
Sbjct: 162 LAKDCDQVNKDDVS 175
Score = 28.7 bits (61), Expect = 1.1
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = -2
Query: 592 KTCYVCGKPGHISRECDEARN 530
K C+ C + GHI ++C EA++
Sbjct: 77 KFCFACRQQGHIVQDCPEAKD 97
>SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit
Air1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 313
Score = 53.6 bits (123), Expect = 3e-08
Identities = 28/83 (33%), Positives = 34/83 (40%), Gaps = 1/83 (1%)
Frame = -2
Query: 847 CFKCNRTGHFARDCKEEADRCYRCNG-TGHIARECAQSPDEPSCYNCNKTGHIARNCPEG 671
C C GH ++DC C C HI+ C P C NC GHIA C E
Sbjct: 89 CHNCKGNGHISKDCPHVL--CTTCGAIDDHISVRC---PWTKKCMNCGLLGHIAARCSE- 142
Query: 670 GRESATQTCYNCNKSGHISRNCP 602
R+ + C C+ H S CP
Sbjct: 143 PRKRGPRVCRTCHTDTHTSSTCP 165
Score = 50.4 bits (115), Expect = 3e-07
Identities = 26/64 (40%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Frame = -2
Query: 721 CYNCNKTGHIARNCPEGGRESATQTCYNCNK-SGHISRNCPDGTKTCYVCGKPGHISREC 545
C+NC GHI+++CP C C HIS CP TK C CG GHI+ C
Sbjct: 89 CHNCKGNGHISKDCPH-------VLCTTCGAIDDHISVRCP-WTKKCMNCGLLGHIAARC 140
Query: 544 DEAR 533
E R
Sbjct: 141 SEPR 144
Score = 49.6 bits (113), Expect = 6e-07
Identities = 31/102 (30%), Positives = 43/102 (42%), Gaps = 5/102 (4%)
Frame = -2
Query: 835 NRTGHFARDCKEEADRCYRCNGTGHIARECAQSPDEPSCYNCNK-TGHIARNCPEGGRES 659
+R +F D E+ C+ C G GHI+++C C C HI+ CP
Sbjct: 74 SRGRYFGSD-PSESIVCHNCKGNGHISKDC----PHVLCTTCGAIDDHISVRCP------ 122
Query: 658 ATQTCYNCNKSGHISRNCPD----GTKTCYVCGKPGHISREC 545
T+ C NC GHI+ C + G + C C H S C
Sbjct: 123 WTKKCMNCGLLGHIAARCSEPRKRGPRVCRTCHTDTHTSSTC 164
Score = 30.7 bits (66), Expect = 0.28
Identities = 20/85 (23%), Positives = 30/85 (35%), Gaps = 15/85 (17%)
Frame = -2
Query: 790 RCYRCNGTGHIARECAQSPDEPS--CYNCNKTGHIARNCPEGGR-------------ESA 656
+C C GHIA C++ C C+ H + CP R
Sbjct: 126 KCMNCGLLGHIAARCSEPRKRGPRVCRTCHTDTHTSSTCPLIWRYYVEKEHPVRIDVSEV 185
Query: 655 TQTCYNCNKSGHISRNCPDGTKTCY 581
+ CYNC H +C +++ Y
Sbjct: 186 RKFCYNCASDEHFGDDCTLPSRSNY 210
>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 587
Score = 44.0 bits (99), Expect = 3e-05
Identities = 16/40 (40%), Positives = 21/40 (52%)
Frame = -2
Query: 721 CYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCP 602
C NC GH +CPE + C +C GHI+R+CP
Sbjct: 311 CQNCGNVGHRRFDCPERINHTMNIVCRHCGSIGHIARDCP 350
Score = 39.5 bits (88), Expect = 6e-04
Identities = 21/56 (37%), Positives = 27/56 (48%), Gaps = 5/56 (8%)
Frame = -2
Query: 667 RESATQTCYNCNKSGHISRNCPDGTK-----TCYVCGKPGHISRECDEARN*PQPP 515
R+ Q C NC GH +CP+ C CG GHI+R+C R+ QPP
Sbjct: 304 RDDENQVCQNCGNVGHRRFDCPERINHTMNIVCRHCGSIGHIARDC-PVRD-QQPP 357
Score = 36.7 bits (81), Expect = 0.004
Identities = 16/50 (32%), Positives = 21/50 (42%), Gaps = 5/50 (10%)
Frame = -2
Query: 859 QREKCFKCNRTGHFARDCKEEADR-----CYRCNGTGHIARECAQSPDEP 725
+ + C C GH DC E + C C GHIAR+C +P
Sbjct: 307 ENQVCQNCGNVGHRRFDCPERINHTMNIVCRHCGSIGHIARDCPVRDQQP 356
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 34.7 bits (76), Expect = 0.017
Identities = 13/26 (50%), Positives = 14/26 (53%)
Frame = -2
Query: 622 HISRNCPDGTKTCYVCGKPGHISREC 545
H + CP TCY CGK H REC
Sbjct: 1794 HTGKACPVRLSTCYKCGKADHNLREC 1819
Score = 27.1 bits (57), Expect = 3.4
Identities = 9/26 (34%), Positives = 11/26 (42%)
Frame = -2
Query: 823 HFARDCKEEADRCYRCNGTGHIAREC 746
H + C CY+C H REC
Sbjct: 1794 HTGKACPVRLSTCYKCGKADHNLREC 1819
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 34.7 bits (76), Expect = 0.017
Identities = 13/26 (50%), Positives = 14/26 (53%)
Frame = -2
Query: 622 HISRNCPDGTKTCYVCGKPGHISREC 545
H + CP TCY CGK H REC
Sbjct: 1794 HTGKACPVRLSTCYKCGKADHNLREC 1819
Score = 27.1 bits (57), Expect = 3.4
Identities = 9/26 (34%), Positives = 11/26 (42%)
Frame = -2
Query: 823 HFARDCKEEADRCYRCNGTGHIAREC 746
H + C CY+C H REC
Sbjct: 1794 HTGKACPVRLSTCYKCGKADHNLREC 1819
>SPCC825.02 |||glucosidase II Gtb1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 506
Score = 30.3 bits (65), Expect = 0.37
Identities = 14/41 (34%), Positives = 19/41 (46%), Gaps = 4/41 (9%)
Frame = -2
Query: 685 NCPEGGRESATQTCYN----CNKSGHISRNCPDGTKTCYVC 575
+CP+G E T C+N C +G+IS P VC
Sbjct: 66 DCPDGSDEPGTSACHNGKFFCKNTGYISSYIPSNRVDDTVC 106
>SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 855
Score = 29.9 bits (64), Expect = 0.49
Identities = 15/58 (25%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
Frame = -2
Query: 742 QSPDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCN-KSGHISRNCPDGTKTCYVCG 572
++ ++P+ N + N + T TC NC ++ + R PDG C CG
Sbjct: 603 KNAEKPTVSNAAEDKKGDANTRRANATNPTPTCTNCQTRTTPLWRRSPDGQPLCNACG 660
>SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFIID
complex subunit Taf111|Schizosaccharomyces pombe|chr
1|||Manual
Length = 979
Score = 29.1 bits (62), Expect = 0.85
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = -2
Query: 670 GRESATQTCYNCNKSGHISRNCPDGTKTCYVCGKP 566
GR+ T+ C NC + GH+ N K C + G+P
Sbjct: 939 GRKPTTRKCSNCGQVGHMKTN-----KICPLFGRP 968
Score = 25.8 bits (54), Expect = 7.9
Identities = 11/28 (39%), Positives = 14/28 (50%), Gaps = 2/28 (7%)
Frame = -2
Query: 742 QSPDEPSCYNCNKTGHIARN--CPEGGR 665
+ P C NC + GH+ N CP GR
Sbjct: 940 RKPTTRKCSNCGQVGHMKTNKICPLFGR 967
>SPBC31F10.10c |||zf-MYND type zinc finger
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 574
Score = 27.1 bits (57), Expect = 3.4
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = -2
Query: 862 RQREKCFKCNRTGHFARDCKEEA 794
RQ KC +C RT + +++C+ +A
Sbjct: 493 RQFAKCRRCRRTKYCSKECQHQA 515
>SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 482
Score = 26.6 bits (56), Expect = 4.5
Identities = 13/46 (28%), Positives = 22/46 (47%), Gaps = 4/46 (8%)
Frame = -2
Query: 847 CFKCNRTGHFARDCKEEADRCY----RCNGTGHIARECAQSPDEPS 722
C++C + GH+ + C AD Y R T I R ++ + P+
Sbjct: 185 CYRCGQKGHWIQACPTNADPNYDGKPRVKRTTGIPRSFLKNVERPA 230
Score = 26.2 bits (55), Expect = 6.0
Identities = 12/31 (38%), Positives = 15/31 (48%), Gaps = 5/31 (16%)
Frame = -2
Query: 754 RECAQSPDEPS-----CYNCNKTGHIARNCP 677
R A PD+P CY C + GH + CP
Sbjct: 169 RIAASVPDKPPPPGYICYRCGQKGHWIQACP 199
Score = 26.2 bits (55), Expect = 6.0
Identities = 11/27 (40%), Positives = 13/27 (48%)
Frame = -2
Query: 646 CYNCNKSGHISRNCPDGTKTCYVCGKP 566
CY C + GH + CP Y GKP
Sbjct: 185 CYRCGQKGHWIQACPTNADPNY-DGKP 210
>SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1016
Score = 26.6 bits (56), Expect = 4.5
Identities = 20/61 (32%), Positives = 27/61 (44%), Gaps = 5/61 (8%)
Frame = +1
Query: 637 SYSRSASQTPAPPRDSSVRCGPSCCSCNTTARPGSVRTRALCA-----PCRYICSNGQPL 801
S S ++S TP P SS+ P+ S TTA+ ++ LC Y C N Q
Sbjct: 843 SSSTTSSITPTPTTTSSITPTPTTTSTTTTAQSTGMQ---LCGSNYYDASSYYCDNDQLC 899
Query: 802 P 804
P
Sbjct: 900 P 900
>SPBC1718.07c |zfs1|moc4|transcription factor Zfs1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 404
Score = 26.2 bits (55), Expect = 6.0
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = +3
Query: 162 HGTPASNLSFDKKICTKYIKYILCNAKNCNATPSIVQ 272
HG P S +S K+C + + N +N A PS+V+
Sbjct: 210 HGQPESTMSRKPKLCVQ--SKSMTNIRNSVAKPSLVR 244
>SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 960
Score = 25.8 bits (54), Expect = 7.9
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = +1
Query: 361 YKSTVEPHSSVCGADAALHLYCNRLSCVARGVL 459
Y +T EP ++ GA+ L + R +A+G+L
Sbjct: 50 YDNTWEPEQNLFGAEKVLKKWKKRKKLIAKGLL 82
>SPAC23H4.15 |||ribosome biogenesis protein Tsr1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 783
Score = 25.8 bits (54), Expect = 7.9
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +1
Query: 322 KNKHERASTRPSIYKSTVEPHSS 390
K+KH S+ YK+ VEPH S
Sbjct: 16 KSKHASKSSLKEKYKNEVEPHRS 38
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,158,651
Number of Sequences: 5004
Number of extensions: 63209
Number of successful extensions: 253
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 210
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 430470850
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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