Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc11d04
         (906 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014298-2398|AAF48605.1| 1060|Drosophila melanogaster CG9981-PA...    31   2.2  
AE014297-3953|AAF56595.1|  523|Drosophila melanogaster CG14238-P...    29   8.8  

>AE014298-2398|AAF48605.1| 1060|Drosophila melanogaster CG9981-PA
            protein.
          Length = 1060

 Score = 31.1 bits (67), Expect = 2.2
 Identities = 21/105 (20%), Positives = 45/105 (42%), Gaps = 1/105 (0%)
 Frame = +1

Query: 454  CQFFCRVKIYLF*FLVLFHN*YKYKKHVFL*YNHLTDYFLMIHCLQMLILFELLFI-DIY 630
            C  F   +  +   L L H  Y  ++  FL   +     ++  C+ +  +++L    ++Y
Sbjct: 806  CADFSIARFEMLRRLFLVHGHYNSQRLAFLVLFYCYKNIIITGCMALYQVYDLYSATNVY 865

Query: 631  KSINRFFLNIFFFCEHKCEIIIFCSILFTGGHLCEHLKRYRPIAH 765
             SI  +  +I +       ++  C   ++   L  H + Y+P+AH
Sbjct: 866  NSIYLWLFDIVYI-SFSFTVLAICDKDYSEETLLSHPELYKPLAH 909


>AE014297-3953|AAF56595.1|  523|Drosophila melanogaster CG14238-PA
           protein.
          Length = 523

 Score = 29.1 bits (62), Expect = 8.8
 Identities = 14/33 (42%), Positives = 21/33 (63%)
 Frame = +1

Query: 598 ILFELLFIDIYKSINRFFLNIFFFCEHKCEIII 696
           + F LL I  YK IN  ++N+FF C++   II+
Sbjct: 276 LTFRLLIIFQYKIIN--YMNVFFTCKNSLVIIL 306


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,407,305
Number of Sequences: 53049
Number of extensions: 490696
Number of successful extensions: 712
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 598
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 712
length of database: 24,988,368
effective HSP length: 85
effective length of database: 20,479,203
effective search space used: 4423507848
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)