Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc11d04
         (906 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92782-12|CAH60765.1|  328|Caenorhabditis elegans Hypothetical p...    33   0.28 
AC084197-28|AAO38573.1|  350|Caenorhabditis elegans Serpentine r...    31   0.86 

>Z92782-12|CAH60765.1|  328|Caenorhabditis elegans Hypothetical
           protein F14F8.13 protein.
          Length = 328

 Score = 33.1 bits (72), Expect = 0.28
 Identities = 14/54 (25%), Positives = 29/54 (53%)
 Frame = +1

Query: 460 FFCRVKIYLF*FLVLFHN*YKYKKHVFL*YNHLTDYFLMIHCLQMLILFELLFI 621
           +F  + + +  FL+++H  +    H     N ++DYF+ I+C    I+F +L +
Sbjct: 64  YFIFIIVVVLLFLIMWH--WDDSSHQLALNNTVSDYFIFIYCFSFFIIFYILHV 115


>AC084197-28|AAO38573.1|  350|Caenorhabditis elegans Serpentine
           receptor, class v protein13 protein.
          Length = 350

 Score = 31.5 bits (68), Expect = 0.86
 Identities = 20/62 (32%), Positives = 37/62 (59%), Gaps = 2/62 (3%)
 Frame = -1

Query: 249 FVFILIVKQNYKLK*INFNTTK-KIGISKXVYQ*IIVCKMII-LRKNMLFVFILIVKQNY 76
           F+FI++ K+N KL  ++ N +K K    K   +  I+C +I+ ++  +L  FIL V + +
Sbjct: 202 FLFIILHKRNAKLNSLSINVSKTKENDRKRERRLFIMCSVIVSVQMTILIFFILKVAKVF 261

Query: 75  KL 70
           +L
Sbjct: 262 EL 263


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,074,674
Number of Sequences: 27780
Number of extensions: 306183
Number of successful extensions: 494
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 410
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 494
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2307803960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)