Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc11d03
         (232 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC18E5.06 |rps21||40S ribosomal protein S21|Schizosaccharomyce...    68   2e-13
SPBC83.16c |||conserved fungal protein|Schizosaccharomyces pombe...    27   0.44 
SPAC32A11.01 |mug8||conserved fungal protein|Schizosaccharomyces...    26   0.77 
SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces pombe...    26   0.77 
SPBC25H2.02 |ths1||threonine-tRNA ligase Ths1 |Schizosaccharomyc...    25   1.0  
SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces...    24   2.3  
SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ...    23   5.4  
SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyce...    23   5.4  
SPBC1683.09c |frp1||ferric-chelate reductase Frp1|Schizosaccharo...    23   5.4  
SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces p...    23   7.2  
SPCC31H12.08c |ccr4|SPCC5E4.02c|CCR4-Not complex subunit Ccr4 |S...    23   7.2  
SPCC757.07c |ctt1|cta1|catalase|Schizosaccharomyces pombe|chr 3|...    22   9.5  
SPBP8B7.07c |set6||histone lysine methyltransferase Set6 |Schizo...    22   9.5  

>SPBC18E5.06 |rps21||40S ribosomal protein S21|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 87

 Score = 67.7 bits (158), Expect = 2e-13
 Identities = 32/54 (59%), Positives = 39/54 (72%)
 Frame = -3

Query: 185 MQNDAGEFVDLYCPRKCSASNRLIHAKDHASVQLVIADVDPATGRAADTSKINY 24
           M+N+AG+ VDLY PRKCSA+NR+I AKDHASVQ+ +  VD A GR     K  Y
Sbjct: 1   MENEAGQLVDLYVPRKCSATNRIIQAKDHASVQINVCAVD-AEGRQIPGEKTTY 53


>SPBC83.16c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 563

 Score = 26.6 bits (56), Expect = 0.44
 Identities = 13/48 (27%), Positives = 20/48 (41%)
 Frame = +1

Query: 55  PVAGSTSAITSCTEAWSLAWMRRLLAEHFLGQYKSTNSPASFCILYVR 198
           P+     A+T  TE W++A+    +A  F     S       C  Y+R
Sbjct: 482 PILQKICAVTRTTETWAVAFAHYEMAVAFFESNGSKKEGLKHCDAYLR 529


>SPAC32A11.01 |mug8||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 720

 Score = 25.8 bits (54), Expect = 0.77
 Identities = 13/55 (23%), Positives = 22/55 (40%)
 Frame = +1

Query: 34  LDVSAARPVAGSTSAITSCTEAWSLAWMRRLLAEHFLGQYKSTNSPASFCILYVR 198
           L VS+      S   ++     W+  W    L E F+   + TN+     + Y+R
Sbjct: 170 LAVSSNSSTVSSLELVSQIASIWAFDWPMMNLQETFIYWDRCTNACLRLLLCYIR 224


>SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 882

 Score = 25.8 bits (54), Expect = 0.77
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +1

Query: 85  SCTEAWSLAWMRRLLAEHFLGQYKST 162
           S T+A SL W  +   +H + Q+KST
Sbjct: 649 SATKAHSLGWEFKANDDHIIRQFKST 674


>SPBC25H2.02 |ths1||threonine-tRNA ligase Ths1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 703

 Score = 25.4 bits (53), Expect = 1.0
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +1

Query: 103 SLAWMRRLLAEHFLGQYKSTNSPASFCILYV 195
           SL  M  +L EH+ G++    SP   CI+ V
Sbjct: 575 SLERMIAILTEHYAGKWPFWMSPRQVCIIPV 605


>SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1639

 Score = 24.2 bits (50), Expect = 2.3
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +3

Query: 144 RAVQVNEFTGVVLHFICTST 203
           RAV + + TG VLHF  T T
Sbjct: 808 RAVPLRDCTGSVLHFFGTMT 827


>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
           S0B|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 287

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 10/34 (29%), Positives = 18/34 (52%)
 Frame = +1

Query: 112 WMRRLLAEHFLGQYKSTNSPASFCILYVRPHGTR 213
           W + +LA   +    +  +PA  C++  RP+G R
Sbjct: 58  WEKLVLAARVIA---TIENPADVCVISSRPYGHR 88


>SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 681

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = -3

Query: 110 AKDHASVQLVIADVDPATGRAADTSKINY 24
           ++DHA   L     DP +  A   S +NY
Sbjct: 373 SEDHADASLTTHVFDPISPTALSNSVLNY 401


>SPBC1683.09c |frp1||ferric-chelate reductase
           Frp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 564

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = +2

Query: 137 ISSGSTSQRIHRRRSAFYMYVHTVHG 214
           ISS      +HRR S + + +  +HG
Sbjct: 147 ISSHEKMNYVHRRLSQYAIMIGAIHG 172


>SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2280

 Score = 22.6 bits (46), Expect = 7.2
 Identities = 12/34 (35%), Positives = 15/34 (44%)
 Frame = +1

Query: 106 LAWMRRLLAEHFLGQYKSTNSPASFCILYVRPHG 207
           L  M   +A HFLG      +PA     Y+  HG
Sbjct: 31  LRTMAPRVASHFLGGNSLDKAPAGKVKDYIASHG 64


>SPCC31H12.08c |ccr4|SPCC5E4.02c|CCR4-Not complex subunit Ccr4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 690

 Score = 22.6 bits (46), Expect = 7.2
 Identities = 11/32 (34%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = +1

Query: 67  STSAITSCTEAWSLAW-MRRLLAEHFLGQYKS 159
           +TS +   T +W+L+W  R+ L    LG Y +
Sbjct: 349 ATSTLYGYTPSWALSWSYRKDLIMQELGGYNA 380


>SPCC757.07c |ctt1|cta1|catalase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 512

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 10/16 (62%), Positives = 10/16 (62%)
 Frame = -3

Query: 194 TYKMQNDAGEFVDLYC 147
           TYK  ND GEF   YC
Sbjct: 205 TYKFVNDKGEF--YYC 218


>SPBP8B7.07c |set6||histone lysine methyltransferase Set6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 483

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 12/47 (25%), Positives = 21/47 (44%)
 Frame = +1

Query: 55  PVAGSTSAITSCTEAWSLAWMRRLLAEHFLGQYKSTNSPASFCILYV 195
           P+ G  +   + + +WS A +    A H+   Y++      FC L V
Sbjct: 122 PMEGHQNEFQAVSSSWSDAELIASAASHYTQIYQAELFQKLFCRLAV 168


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 895,766
Number of Sequences: 5004
Number of extensions: 13687
Number of successful extensions: 50
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 50
length of database: 2,362,478
effective HSP length: 56
effective length of database: 2,082,254
effective search space used: 41645080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)