Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc11d03
         (232 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ439353-10|CAD27932.1| 3325|Anopheles gambiae F25C8.3 protein p...    23   1.8  
AY280612-1|AAQ21365.1|  309|Anopheles gambiae carbonic anhydrase...    22   2.4  
AF004916-1|AAB94672.1|  686|Anopheles gambiae pro-phenol oxidase...    22   2.4  
AB097127-1|BAC82595.1| 1209|Anopheles gambiae reverse transcript...    21   4.2  
AY753542-1|AAV28545.1| 3361|Anopheles gambiae SGS5 protein.            21   5.6  
AY745222-1|AAU93489.1|  276|Anopheles gambiae cytochrome P450 pr...    21   5.6  
AY347952-1|AAR28375.1|  634|Anopheles gambiae putative sulfakini...    21   5.6  
AF395079-1|AAK97461.1|  371|Anopheles gambiae basic helix-loop-h...    21   7.4  
AF002238-1|AAB97731.1|  327|Anopheles gambiae ribosomal protein ...    21   7.4  
AB090821-2|BAC57918.1| 1168|Anopheles gambiae reverse transcript...    21   7.4  

>AJ439353-10|CAD27932.1| 3325|Anopheles gambiae F25C8.3 protein
            protein.
          Length = 3325

 Score = 22.6 bits (46), Expect = 1.8
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +2

Query: 152  TSQRIHRRRSAFYMYVHTVHGI 217
            + Q +    S  +M VH+VHGI
Sbjct: 1980 SQQLVGSALSVLWMVVHSVHGI 2001



 Score = 20.6 bits (41), Expect = 7.4
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -3

Query: 164 FVDLYCPRKCSASNR 120
           F+ L CP  C+ +NR
Sbjct: 677 FMHLGCPHGCNDANR 691


>AY280612-1|AAQ21365.1|  309|Anopheles gambiae carbonic anhydrase
           protein.
          Length = 309

 Score = 22.2 bits (45), Expect = 2.4
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +3

Query: 171 GVVLHFICTSTRYTELTDA 227
           G+ LH +   TRY  L DA
Sbjct: 130 GLELHLVHHDTRYASLEDA 148


>AF004916-1|AAB94672.1|  686|Anopheles gambiae pro-phenol oxidase
           subunit 2 protein.
          Length = 686

 Score = 22.2 bits (45), Expect = 2.4
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = -1

Query: 175 TPVNSLTCTARGNARPATASSTLR 104
           T V SLT   RGN   AT+   +R
Sbjct: 654 TAVRSLTDFTRGNTNMATSQVQIR 677


>AB097127-1|BAC82595.1| 1209|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1209

 Score = 21.4 bits (43), Expect = 4.2
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +1

Query: 88  CTEAWSLAWMRRL 126
           C++A   AWMRRL
Sbjct: 298 CSKAEKPAWMRRL 310


>AY753542-1|AAV28545.1| 3361|Anopheles gambiae SGS5 protein.
          Length = 3361

 Score = 21.0 bits (42), Expect = 5.6
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = +2

Query: 188  YMYVHTVHGIDRCES 232
            Y Y HT++G D  E+
Sbjct: 1774 YPYTHTIYGNDPTEN 1788


>AY745222-1|AAU93489.1|  276|Anopheles gambiae cytochrome P450
           protein.
          Length = 276

 Score = 21.0 bits (42), Expect = 5.6
 Identities = 8/30 (26%), Positives = 17/30 (56%)
 Frame = +1

Query: 139 FLGQYKSTNSPASFCILYVRPHGTRN*QMR 228
           F+  ++++ S  SFC+  +  HG    ++R
Sbjct: 87  FIAGFETSASLLSFCLYELAKHGAVQDRLR 116


>AY347952-1|AAR28375.1|  634|Anopheles gambiae putative sulfakinin
           GPCR protein.
          Length = 634

 Score = 21.0 bits (42), Expect = 5.6
 Identities = 9/38 (23%), Positives = 16/38 (42%)
 Frame = +1

Query: 79  ITSCTEAWSLAWMRRLLAEHFLGQYKSTNSPASFCILY 192
           I+SC    +  +M R   + FLG +    +    C  +
Sbjct: 514 ISSCCNPITYCFMNRRFRQAFLGVFSCYRNRMPICCCF 551


>AF395079-1|AAK97461.1|  371|Anopheles gambiae basic
           helix-loop-helix transcriptionfactor ASH protein.
          Length = 371

 Score = 20.6 bits (41), Expect = 7.4
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +2

Query: 98  HGP*RG*GGCWPSISSG 148
           HG   G GGC+  I+ G
Sbjct: 231 HGGTSGGGGCYAPIAGG 247


>AF002238-1|AAB97731.1|  327|Anopheles gambiae ribosomal protein L5
           protein.
          Length = 327

 Score = 20.6 bits (41), Expect = 7.4
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = +2

Query: 128 WPSISSGSTSQRIHRRRSAFY 190
           WP     S  +R+ RRR  F+
Sbjct: 288 WPRSRPTSKPKRLPRRRRPFF 308


>AB090821-2|BAC57918.1| 1168|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1168

 Score = 20.6 bits (41), Expect = 7.4
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = +1

Query: 91  TEAWSLAWMRRLL 129
           TEA  L W RR+L
Sbjct: 805 TEATDLQWCRRIL 817


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 238,824
Number of Sequences: 2352
Number of extensions: 4169
Number of successful extensions: 11
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 563,979
effective HSP length: 52
effective length of database: 441,675
effective search space used: 10600200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)