Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc11c19
(858 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_17368| Best HMM Match : Glyco_tran_28_C (HMM E-Value=1.3) 82 5e-16
SB_44571| Best HMM Match : No HMM Matches (HMM E-Value=.) 81 1e-15
SB_44570| Best HMM Match : No HMM Matches (HMM E-Value=.) 80 2e-15
SB_5360| Best HMM Match : No HMM Matches (HMM E-Value=.) 77 1e-14
SB_24817| Best HMM Match : No HMM Matches (HMM E-Value=.) 77 2e-14
SB_9495| Best HMM Match : No HMM Matches (HMM E-Value=.) 76 3e-14
SB_26422| Best HMM Match : No HMM Matches (HMM E-Value=.) 72 7e-13
SB_44502| Best HMM Match : UDPGT (HMM E-Value=2e-05) 69 5e-12
SB_22264| Best HMM Match : UDPGT (HMM E-Value=6.4e-11) 67 1e-11
SB_23516| Best HMM Match : Glyco_tran_28_C (HMM E-Value=0.004) 65 6e-11
SB_16634| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.52
SB_56407| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.4
SB_18895| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.4
SB_3932| Best HMM Match : Spectrin (HMM E-Value=5.2e-17) 28 8.5
SB_24426| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.5
>SB_17368| Best HMM Match : Glyco_tran_28_C (HMM E-Value=1.3)
Length = 157
Score = 82.2 bits (194), Expect = 5e-16
Identities = 47/155 (30%), Positives = 77/155 (49%), Gaps = 1/155 (0%)
Frame = -2
Query: 701 PLTKLSPVIDAKMNKS-KSGAIYVSFGSSIDTKSFANEFFYMLINTFKALDNYTILWKID 525
P L ++A M +S G I +SFGS I+ N+ M++ F + +L K+D
Sbjct: 2 PPKPLPAELEAFMQRSGDEGVILLSFGSMIE--GLHNDTMLMMLKAFSQMPQ-NVLVKLD 58
Query: 524 DEVVKNITLPANVITQNWFNQRAVLRHKKMAAFITQGGLQSSDEALEAGIPMVCLPMMGD 345
+ ++P NV W Q VL H K FIT G E+ G+PM+C+P+ GD
Sbjct: 59 LNGLPKDSVPPNVRAVKWLPQNDVLGHSKTKLFITHAGANGLAESAYHGVPMICVPIFGD 118
Query: 344 QFYHAHKLQQLGVARALDTVTVSSDQLLLAINDVL 240
QF ++ + +G+A + +++DQ + + VL
Sbjct: 119 QFDNSQLAKDIGIAEMIKVNDMTADQFVSTLQRVL 153
>SB_44571| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 428
Score = 80.6 bits (190), Expect = 1e-15
Identities = 65/244 (26%), Positives = 119/244 (48%)
Frame = -2
Query: 758 PVSPSVQYLGGGIHLVKSAPLTKLSPVIDAKMNKSKSGAIYVSFGSSIDTKSFANEFFYM 579
PV+P + ++ K AP+ VID S G + VSFGS+I S + +
Sbjct: 156 PVTPRLPFM-----YYKDAPMFPSHKVID-----SSDGVVIVSFGSNI-LSSLPRKDIDV 204
Query: 578 LINTFKALDNYTILWKIDDEVVKNITLPANVITQNWFNQRAVLRHKKMAAFITQGGLQSS 399
L F L T+ W+I + N++ N+ T W Q +L ++K ++ G S
Sbjct: 205 LAEAFGQLKE-TVFWRIKGYIPANLS--PNIKTVEWLPQNDLLANQKTRVLVSHLGQNSL 261
Query: 398 DEALEAGIPMVCLPMMGDQFYHAHKLQQLGVARALDTVTVSSDQLLLAINDVLFNASTYK 219
E+ GIP+V +P+ DQF +A + G+ ++D TV++DQL I V+ + +K
Sbjct: 262 YESSYHGIPLVGVPLCADQFDNAVLAEDRGLGLSVDINTVTADQLYRTIRRVV-DEPRFK 320
Query: 218 KHMAELYALINNDKATFPPLDKAIKFTERVIRYRHDISRRLYSLKTTAANVPYSNYYMYK 39
++ A + L+ + + + P ++A + E +R+ RRL L + ++ + Y++
Sbjct: 321 ENAARISRLMQDRRRS--PTEEAADWIEYTLRH-----RRLTHLCPASVHLTWYQYFLLD 373
Query: 38 SVLS 27
+L+
Sbjct: 374 CILA 377
>SB_44570| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 795
Score = 80.2 bits (189), Expect = 2e-15
Identities = 65/243 (26%), Positives = 121/243 (49%)
Frame = -2
Query: 758 PVSPSVQYLGGGIHLVKSAPLTKLSPVIDAKMNKSKSGAIYVSFGSSIDTKSFANEFFYM 579
P+ P + +GG + P LSP +NKS G I VSFGS+ + A++ +
Sbjct: 431 PLLPGHKLIGG----INIEPARPLSPEFQHIVNKS-DGVIVVSFGSNF--AAIADKEVDV 483
Query: 578 LINTFKALDNYTILWKIDDEVVKNITLPANVITQNWFNQRAVLRHKKMAAFITQGGLQSS 399
L F L T++W+ + N++ N+ T W Q +L ++K F++ G S
Sbjct: 484 LARAFGRLKE-TVIWRQKGYIPANLS--PNIKTVEWLPQNDLLANEKTRVFVSHLGQNSL 540
Query: 398 DEALEAGIPMVCLPMMGDQFYHAHKLQQLGVARALDTVTVSSDQLLLAINDVLFNASTYK 219
EA GIP+V +P+ GDQ +A ++ G+ A+D TV++D+L I V+ + +K
Sbjct: 541 YEAGYHGIPLVGVPLFGDQPDNAVLVEDKGLGLAVDIHTVTADKLYRTIRRVI-DEPRFK 599
Query: 218 KHMAELYALINNDKATFPPLDKAIKFTERVIRYRHDISRRLYSLKTTAANVPYSNYYMYK 39
++ + L+ + + + P ++A + E +R+ RL L+ + ++ + Y++
Sbjct: 600 ENAVRISRLMQDRRRS--PTEEAADWIEYTLRH-----GRLTHLRPASIHLTWYQYFLLD 652
Query: 38 SVL 30
+L
Sbjct: 653 VML 655
Score = 68.9 bits (161), Expect = 5e-12
Identities = 47/142 (33%), Positives = 76/142 (53%)
Frame = -2
Query: 665 MNKSKSGAIYVSFGSSIDTKSFANEFFYMLINTFKALDNYTILWKIDDEVVKNITLPANV 486
+NKS G I VSFGS+I + A++ +L F L T+ W+ + N++ N+
Sbjct: 53 VNKS-DGVIIVSFGSNI--AAIADKEVDVLAEAFGRLKE-TVFWRQKGYIPANLS--PNI 106
Query: 485 ITQNWFNQRAVLRHKKMAAFITQGGLQSSDEALEAGIPMVCLPMMGDQFYHAHKLQQLGV 306
T W Q +L ++K F++ G S EA GIP+V +P+ GDQ +A ++ G+
Sbjct: 107 KTVEWLPQNDLLANEKTRVFVSHLGQNSLYEAGYHGIPLVGVPLFGDQSENAVLVEDKGL 166
Query: 305 ARALDTVTVSSDQLLLAINDVL 240
A+D TV++D+L I V+
Sbjct: 167 GLAVDIHTVTADELYRTIRRVI 188
>SB_5360| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 506
Score = 77.4 bits (182), Expect = 1e-14
Identities = 71/278 (25%), Positives = 131/278 (47%), Gaps = 2/278 (0%)
Frame = -2
Query: 857 KQQFG--PDTPTIEELRNKVQXXXXXLHPIFDNNRPVSPSVQYLGGGIHLVKSAPLTKLS 684
KQ++G P++ E + K Q P P+ P + +G V P LS
Sbjct: 185 KQRYGINPESSFAEAI-GKAQMVLFLYDPAIGYAFPLLPGHKLIGP----VNIQPPRPLS 239
Query: 683 PVIDAKMNKSKSGAIYVSFGSSIDTKSFANEFFYMLINTFKALDNYTILWKIDDEVVKNI 504
+ KS G I VSFGS++ + AN+ +L F L T+ W+ + N+
Sbjct: 240 SEFQQIVKKS-DGVIIVSFGSNV--AAIANKEVDVLTEAFGRLKE-TVFWRQKGYIPANL 295
Query: 503 TLPANVITQNWFNQRAVLRHKKMAAFITQGGLQSSDEALEAGIPMVCLPMMGDQFYHAHK 324
+ N+ T W Q +L ++K F++ G S E+ GIP+V +P+ GDQF +A
Sbjct: 296 S--PNIKTVEWLPQNDLLANEKTRLFVSHLGQNSLYESGYRGIPLVGVPLWGDQFDNAVL 353
Query: 323 LQQLGVARALDTVTVSSDQLLLAINDVLFNASTYKKHMAELYALINNDKATFPPLDKAIK 144
++ G+ +D TV++D+ AI V+ + +K++ A + L+ + + + P +A
Sbjct: 354 VKDKGLGLVVDIHTVTADEFYRAIRRVI-DEPGFKENAARISRLMRDRRRS--PTQEAAD 410
Query: 143 FTERVIRYRHDISRRLYSLKTTAANVPYSNYYMYKSVL 30
+ E +R+ + L L+ + ++ + Y++ +L
Sbjct: 411 WIEYTLRHGN-----LTHLRPASVHLTWYQYFLLDVML 443
>SB_24817| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 556
Score = 76.6 bits (180), Expect = 2e-14
Identities = 55/209 (26%), Positives = 108/209 (51%)
Frame = -2
Query: 656 SKSGAIYVSFGSSIDTKSFANEFFYMLINTFKALDNYTILWKIDDEVVKNITLPANVITQ 477
+ G I VSFGS++ + AN+ +++ F L T+ W+ + N++ N+
Sbjct: 327 NSEGVIIVSFGSNV--AAIANKEVDVMVEAFGRLKE-TVFWRQRGYIPSNLS--NNIKIV 381
Query: 476 NWFNQRAVLRHKKMAAFITQGGLQSSDEALEAGIPMVCLPMMGDQFYHAHKLQQLGVARA 297
W Q +L +KK F++ GL S E+ GIP+V +P+ GDQ +A +++ G+ A
Sbjct: 382 EWLPQNDLLANKKTRVFVSHLGLNSLYESGYHGIPVVGVPIYGDQPDNAVLMEEKGLGLA 441
Query: 296 LDTVTVSSDQLLLAINDVLFNASTYKKHMAELYALINNDKATFPPLDKAIKFTERVIRYR 117
+D TV++D+L I V+ + +K++ A + L+ + K + P ++ + E +R+
Sbjct: 442 VDIHTVTADELYRTIRRVI-DEKRFKENAARISRLMQDRKRS--PTEEGADWIEYTLRH- 497
Query: 116 HDISRRLYSLKTTAANVPYSNYYMYKSVL 30
RL L+ + ++ + Y++ +L
Sbjct: 498 ----GRLTHLRPASVHLSWYQYFLLDVML 522
>SB_9495| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 698
Score = 76.2 bits (179), Expect = 3e-14
Identities = 61/240 (25%), Positives = 113/240 (47%), Gaps = 1/240 (0%)
Frame = -2
Query: 761 RPVSPSVQYLGGGIHLVKSAPLTKLSPVIDAKMNKS-KSGAIYVSFGSSIDTKSFANEFF 585
+P+ P V+ +G + +P L ++ M+ S G + VSF + +D +
Sbjct: 391 QPLPPFVKEVG----FLTPSPARPLPADLENFMHGSGDEGVVLVSFSTYMDDMN--QNVL 444
Query: 584 YMLINTFKALDNYTILWKIDDEVVKNITLPANVITQNWFNQRAVLRHKKMAAFITQGGLQ 405
L + F+ + ++ +LWK+D+ N ++ NV W Q +L H K FIT G
Sbjct: 445 DRLSSAFRKI-SHKVLWKVDEGSYPN-SVSDNVKLVEWMPQNDILGHNKTRLFITHAGAH 502
Query: 404 SSDEALEAGIPMVCLPMMGDQFYHAHKLQQLGVARALDTVTVSSDQLLLAINDVLFNAST 225
EA G+P+V +P+ DQ +A L +G+ LD T +S+ ++ A+ +V+ N
Sbjct: 503 GMAEAGYHGVPVVAMPIFTDQPDNARMLSDVGMGVVLDINTATSEDVISAVTEVITNPRL 562
Query: 224 YKKHMAELYALINNDKATFPPLDKAIKFTERVIRYRHDISRRLYSLKTTAANVPYSNYYM 45
++ + L + +A P+++A E V+ H + LK + ++P+ YM
Sbjct: 563 NAARVSHI--LKSRQRA---PVEEAADHVEYVLAAGH-----VTHLKPRSQSMPFYRVYM 612
>SB_26422| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 536
Score = 71.7 bits (168), Expect = 7e-13
Identities = 60/230 (26%), Positives = 106/230 (46%), Gaps = 2/230 (0%)
Frame = -2
Query: 704 APLTKLSPVIDAKMNKS-KSGAIYVSFGSSIDTKSFANEFFYMLINTFKALDNYTILWKI 528
+P L +D M +S + G I VSFG++I+T A M+ F L + I+W++
Sbjct: 291 SPSKPLPAELDHFMRESGEKGVILVSFGTAINTLDPA--VIEMMSKAFAQLP-HKIIWRV 347
Query: 527 -DDEVVKNITLPANVITQNWFNQRAVLRHKKMAAFITQGGLQSSDEALEAGIPMVCLPMM 351
K+++ NV W Q +L H FI GG E G+P+VC P
Sbjct: 348 YPGNYPKSVS--DNVKLVEWVPQNDILGHNNTKLFINHGGANGMAETAYHGVPVVCSPFF 405
Query: 350 GDQFYHAHKLQQLGVARALDTVTVSSDQLLLAINDVLFNASTYKKHMAELYALINNDKAT 171
DQ +++ L+ G+ + T ++++L+ + V+ N +YK + A + + +
Sbjct: 406 ADQPDNSNLLKNAGMGEIVRVNTATAEELVRVVTKVI-NDDSYKTNGARVSRAMKSRPR- 463
Query: 170 FPPLDKAIKFTERVIRYRHDISRRLYSLKTTAANVPYSNYYMYKSVLSIV 21
P+ +A F E V+ H L LK + +P+ YM V++++
Sbjct: 464 -EPVKEAADFVEYVLAQGH-----LPHLKPRSLAMPFYQVYML-DVMAVI 506
>SB_44502| Best HMM Match : UDPGT (HMM E-Value=2e-05)
Length = 261
Score = 68.9 bits (161), Expect = 5e-12
Identities = 53/209 (25%), Positives = 96/209 (45%)
Frame = -2
Query: 656 SKSGAIYVSFGSSIDTKSFANEFFYMLINTFKALDNYTILWKIDDEVVKNITLPANVITQ 477
++ G + VSFGS + S + L N F L Y ++ K D K NV+
Sbjct: 34 AEHGVVLVSFGSMV--MSLDDAVVSKLANVFSKL-KYKVIIKFGDSFPKT----DNVMLV 86
Query: 476 NWFNQRAVLRHKKMAAFITQGGLQSSDEALEAGIPMVCLPMMGDQFYHAHKLQQLGVARA 297
W Q +L + + FIT GG S E G+P++ P+ DQF + K++ G+ +
Sbjct: 87 KWMPQNDILANSNVKLFITHGGANSVYEGCGHGVPLLVTPLFSDQFGYGEKVKAAGLGIS 146
Query: 296 LDTVTVSSDQLLLAINDVLFNASTYKKHMAELYALINNDKATFPPLDKAIKFTERVIRYR 117
+ ++++++ IN+ L YK++ + L+ DK P + A + E VIR
Sbjct: 147 VSLKESTAEEMIKNINE-LIEKPCYKENALRVSRLM-EDKPQTPQQEGAF-WIEYVIR-- 201
Query: 116 HDISRRLYSLKTTAANVPYSNYYMYKSVL 30
+ L+ + ++P+ Y++ +L
Sbjct: 202 ---NNGTQHLRPSGRDLPFYQYFLLDVML 227
>SB_22264| Best HMM Match : UDPGT (HMM E-Value=6.4e-11)
Length = 385
Score = 67.3 bits (157), Expect = 1e-11
Identities = 43/162 (26%), Positives = 75/162 (46%)
Frame = -2
Query: 503 TLPANVITQNWFNQRAVLRHKKMAAFITQGGLQSSDEALEAGIPMVCLPMMGDQFYHAHK 324
++P+NV T W Q +L H K FIT G E+ G+PM+C+P+ GD +A
Sbjct: 201 SIPSNVRTVKWLPQNDLLGHSKTKLFITHAGANGLAESAYHGVPMICVPLFGDHNQNAQV 260
Query: 323 LQQLGVARALDTVTVSSDQLLLAINDVLFNASTYKKHMAELYALINNDKATFPPLDKAIK 144
+ +G+A + +++DQL + VL Y ++ A + ++ K P+ +A
Sbjct: 261 AKDVGIAEVVMLSDITADQLFSVMQAVL-KGKRYHENSARVSRVMR--KRPRAPVVEAAD 317
Query: 143 FTERVIRYRHDISRRLYSLKTTAANVPYSNYYMYKSVLSIVM 18
E V H + L+ ++P+ YM + +VM
Sbjct: 318 LVEYVQALGH-----MGHLRPHGFSLPFYQLYMLDVLAVLVM 354
>SB_23516| Best HMM Match : Glyco_tran_28_C (HMM E-Value=0.004)
Length = 969
Score = 65.3 bits (152), Expect = 6e-11
Identities = 41/153 (26%), Positives = 71/153 (46%)
Frame = -2
Query: 503 TLPANVITQNWFNQRAVLRHKKMAAFITQGGLQSSDEALEAGIPMVCLPMMGDQFYHAHK 324
++P+NV T W Q +L H K FIT G E+ G+PM+C+P+ GD +A
Sbjct: 111 SIPSNVRTVKWLPQNDLLGHSKTKLFITHAGANGLAESAYHGVPMICVPLFGDHNQNAQV 170
Query: 323 LQQLGVARALDTVTVSSDQLLLAINDVLFNASTYKKHMAELYALINNDKATFPPLDKAIK 144
+ +G+A + +++DQL + VL Y ++ A + ++ K P+ +A
Sbjct: 171 AKDVGIAEVVMLSDITADQLFSVMQAVL-KGKRYHENSARVSRVMR--KRPRAPVVEAAD 227
Query: 143 FTERVIRYRHDISRRLYSLKTTAANVPYSNYYM 45
E V H + L+ ++P+ YM
Sbjct: 228 LVEYVQALGH-----MGHLRPHGFSLPFYQLYM 255
>SB_16634| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 88
Score = 32.3 bits (70), Expect = 0.52
Identities = 20/66 (30%), Positives = 29/66 (43%)
Frame = -2
Query: 521 EVVKNITLPANVITQNWFNQRAVLRHKKMAAFITQGGLQSSDEALEAGIPMVCLPMMGDQ 342
E+V+ L N+ + A L K A + GG + A+ A +P + P M DQ
Sbjct: 24 EMVRKNVLYCNIYCVTQYTPHAQL-FPKCLAVMHHGGSGTVASAIRASVPQIVCPFMFDQ 82
Query: 341 FYHAHK 324
Y A K
Sbjct: 83 SYWADK 88
>SB_56407| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2028
Score = 28.7 bits (61), Expect = 6.4
Identities = 16/57 (28%), Positives = 27/57 (47%)
Frame = -2
Query: 473 WFNQRAVLRHKKMAAFITQGGLQSSDEALEAGIPMVCLPMMGDQFYHAHKLQQLGVA 303
W A L H + ++ + GL+SSDE+ ++ I M C M H+ + +A
Sbjct: 939 WSEPPAHLLHGVLRGYLMRYGLRSSDESQKSIIFMQCQMFMNVTELEKHEEYEFSIA 995
>SB_18895| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 520
Score = 28.7 bits (61), Expect = 6.4
Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 9/53 (16%)
Frame = +2
Query: 248 RLSPVIVDRWKR*QCPRRGLRRV----AVICAHGK--TGRPSW---ADTPWVF 379
R + V+ RW R CP+ G R + A +HGK TG S+ + PW F
Sbjct: 272 RATGVVYTRWGRTTCPQGGARSIYSGQAAATSHGKGRTGGSSFECMPNRPWFF 324
>SB_3932| Best HMM Match : Spectrin (HMM E-Value=5.2e-17)
Length = 1426
Score = 28.3 bits (60), Expect = 8.5
Identities = 18/73 (24%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
Frame = -2
Query: 278 SSDQLLLAINDVLFNASTYKKHMAELYALINNDKATFPPLDKAIKFTE-RVIRYRHDISR 102
SSD++ LA + L + Y++ + ++++ NND +++ I E + +R +H
Sbjct: 57 SSDEMDLARKERLGRWAEYRERLLQIHSTSNNDLTDITAMEQPITIEELKNLRDQHVTGG 116
Query: 101 RLYSLKTTAANVP 63
+ +TT VP
Sbjct: 117 DHVTGETTVEMVP 129
>SB_24426| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 81
Score = 28.3 bits (60), Expect = 8.5
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = -2
Query: 638 YVSFGSSIDTKSFANEFFYMLINTFKALDN 549
Y SFG + T S AN F +NT+K L+N
Sbjct: 5 YSSFGGRL-TPSEANSAFQAQVNTYKCLEN 33
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,034,357
Number of Sequences: 59808
Number of extensions: 607806
Number of successful extensions: 1347
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1259
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1347
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2443309836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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