Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc11c18
(478 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC084153-5|AAK84584.1| 108|Caenorhabditis elegans Hypothetical ... 113 8e-26
AF040646-1|AAK31537.1| 530|Caenorhabditis elegans Collagen prot... 31 0.57
AF036705-10|AAB95167.2| 612|Caenorhabditis elegans Hypothetical... 29 1.3
Z77670-1|CAB01247.1| 484|Caenorhabditis elegans Hypothetical pr... 29 1.7
Z75525-7|CAH10769.1| 573|Caenorhabditis elegans Hypothetical pr... 28 3.0
Z75525-6|CAA99765.2| 623|Caenorhabditis elegans Hypothetical pr... 28 3.0
AF003925-1|AAB61344.1| 573|Caenorhabditis elegans mRNA capping ... 28 3.0
AY077615-1|AAL79359.1| 510|Caenorhabditis elegans KSR-2b protein. 28 4.0
AY077614-1|AAL79358.1| 550|Caenorhabditis elegans KSR-2a protein. 28 4.0
AL137227-5|CAB70240.2| 510|Caenorhabditis elegans Hypothetical ... 28 4.0
AL137227-4|CAB70239.2| 550|Caenorhabditis elegans Hypothetical ... 28 4.0
Z70034-14|CAC44294.1| 356|Caenorhabditis elegans Hypothetical p... 27 5.3
Z70034-13|CAC44293.1| 350|Caenorhabditis elegans Hypothetical p... 27 5.3
Z49910-11|CAC44292.1| 356|Caenorhabditis elegans Hypothetical p... 27 5.3
Z49910-10|CAC44291.1| 350|Caenorhabditis elegans Hypothetical p... 27 5.3
Z69383-4|CAA93411.2| 326|Caenorhabditis elegans Hypothetical pr... 27 7.0
AF125459-6|AAN60503.1| 219|Caenorhabditis elegans Hypothetical ... 27 7.0
AF125459-5|AAD12844.1| 345|Caenorhabditis elegans Hypothetical ... 27 7.0
Z73423-3|CAA97775.2| 327|Caenorhabditis elegans Hypothetical pr... 27 9.2
Z66498-2|CAA91291.2| 419|Caenorhabditis elegans Hypothetical pr... 27 9.2
U41023-1|AAA82340.1| 569|Caenorhabditis elegans Hypothetical pr... 27 9.2
>AC084153-5|AAK84584.1| 108|Caenorhabditis elegans Hypothetical
protein Y22D7AL.10 protein.
Length = 108
Score = 113 bits (271), Expect = 8e-26
Identities = 54/97 (55%), Positives = 70/97 (72%)
Frame = -2
Query: 399 ANAVKRLVPLLDRVLIKRAEAITKTAGGIVIPEKAQSKVLHGEVVAVGPGARKENGDFIP 220
+N +K PL DRVL++R A TKT GGI++PEK+Q KVL VV+ G G R E G+ +
Sbjct: 10 SNVLKTFKPLYDRVLVERVAAETKTKGGIMLPEKSQGKVLEATVVSAGAGLRNEKGELVA 69
Query: 219 VQVSVGDKVLLPEYGGTKVSLENDEKEYHLFRESDIL 109
+ V GD+VLLPEYGGTKV +E +KEY +FRESD+L
Sbjct: 70 LTVKPGDRVLLPEYGGTKVVVE--DKEYSIFRESDLL 104
>AF040646-1|AAK31537.1| 530|Caenorhabditis elegans Collagen protein
70 protein.
Length = 530
Score = 30.7 bits (66), Expect = 0.57
Identities = 17/53 (32%), Positives = 21/53 (39%)
Frame = +2
Query: 170 VPPYSGRRTLSPTLT*TGMKSPFSFRAPGPTATTSPCKTLD*AFSGMTMPPAV 328
VPPYSG RT+ P P + P P T T + +PP V
Sbjct: 257 VPPYSGYRTIPPVYNHYETVPPAAQTTPQPPCTPRTTTTTTTTTTTTALPPCV 309
>AF036705-10|AAB95167.2| 612|Caenorhabditis elegans Hypothetical
protein F37C4.1 protein.
Length = 612
Score = 29.5 bits (63), Expect = 1.3
Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = +1
Query: 100 NFRQ-YVRLSEEMIFFLIIFKAYFSTAVFWKKNFITHTNLNGDEVS 234
NF + Y+RLS I L++ + + V K + H N +G ++S
Sbjct: 288 NFEKWYLRLSSTSIGLLVVALFFINIVVINKDQILDHVNFSGKDIS 333
>Z77670-1|CAB01247.1| 484|Caenorhabditis elegans Hypothetical
protein W05E10.1 protein.
Length = 484
Score = 29.1 bits (62), Expect = 1.7
Identities = 15/32 (46%), Positives = 19/32 (59%)
Frame = +1
Query: 97 FNFRQYVRLSEEMIFFLIIFKAYFSTAVFWKK 192
FN Y +S EM+ FLII ST +FWK+
Sbjct: 434 FNSSGYTWVSVEMLTFLII--GALSTCIFWKQ 463
>Z75525-7|CAH10769.1| 573|Caenorhabditis elegans Hypothetical
protein C03D6.3b protein.
Length = 573
Score = 28.3 bits (60), Expect = 3.0
Identities = 10/31 (32%), Positives = 18/31 (58%)
Frame = +1
Query: 181 FWKKNFITHTNLNGDEVSIFFSGSRTDRYYF 273
F +H +L+G ++ ++ + TDRYYF
Sbjct: 43 FHPAEVFSHPHLHGKKIGLWIDLTNTDRYYF 73
>Z75525-6|CAA99765.2| 623|Caenorhabditis elegans Hypothetical
protein C03D6.3a protein.
Length = 623
Score = 28.3 bits (60), Expect = 3.0
Identities = 10/31 (32%), Positives = 18/31 (58%)
Frame = +1
Query: 181 FWKKNFITHTNLNGDEVSIFFSGSRTDRYYF 273
F +H +L+G ++ ++ + TDRYYF
Sbjct: 55 FHPAEVFSHPHLHGKKIGLWIDLTNTDRYYF 85
>AF003925-1|AAB61344.1| 573|Caenorhabditis elegans mRNA capping
enzyme protein.
Length = 573
Score = 28.3 bits (60), Expect = 3.0
Identities = 10/31 (32%), Positives = 18/31 (58%)
Frame = +1
Query: 181 FWKKNFITHTNLNGDEVSIFFSGSRTDRYYF 273
F +H +L+G ++ ++ + TDRYYF
Sbjct: 43 FHPAEVFSHPHLHGKKIGLWIDLTNTDRYYF 73
>AY077615-1|AAL79359.1| 510|Caenorhabditis elegans KSR-2b protein.
Length = 510
Score = 27.9 bits (59), Expect = 4.0
Identities = 19/46 (41%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = +2
Query: 140 SFSSFSRLTLVPPYS-GRRTLSPTLT*TGMKSPFSFRAPGPTATTS 274
SFSS+ R + S RT S T T + + S AP PTAT+S
Sbjct: 17 SFSSWRRSSTSGSISQSSRTTSKTTTSSSVTSSNPINAPPPTATSS 62
>AY077614-1|AAL79358.1| 550|Caenorhabditis elegans KSR-2a protein.
Length = 550
Score = 27.9 bits (59), Expect = 4.0
Identities = 19/46 (41%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = +2
Query: 140 SFSSFSRLTLVPPYS-GRRTLSPTLT*TGMKSPFSFRAPGPTATTS 274
SFSS+ R + S RT S T T + + S AP PTAT+S
Sbjct: 21 SFSSWRRSSTSGSISQSSRTTSKTTTSSSVTSSNPINAPPPTATSS 66
>AL137227-5|CAB70240.2| 510|Caenorhabditis elegans Hypothetical
protein F58D5.4b protein.
Length = 510
Score = 27.9 bits (59), Expect = 4.0
Identities = 19/46 (41%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = +2
Query: 140 SFSSFSRLTLVPPYS-GRRTLSPTLT*TGMKSPFSFRAPGPTATTS 274
SFSS+ R + S RT S T T + + S AP PTAT+S
Sbjct: 17 SFSSWRRSSTSGSISQSSRTTSKTTTSSSVTSSNPINAPPPTATSS 62
>AL137227-4|CAB70239.2| 550|Caenorhabditis elegans Hypothetical
protein F58D5.4a protein.
Length = 550
Score = 27.9 bits (59), Expect = 4.0
Identities = 19/46 (41%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = +2
Query: 140 SFSSFSRLTLVPPYS-GRRTLSPTLT*TGMKSPFSFRAPGPTATTS 274
SFSS+ R + S RT S T T + + S AP PTAT+S
Sbjct: 21 SFSSWRRSSTSGSISQSSRTTSKTTTSSSVTSSNPINAPPPTATSS 66
>Z70034-14|CAC44294.1| 356|Caenorhabditis elegans Hypothetical
protein C18E9.11b protein.
Length = 356
Score = 27.5 bits (58), Expect = 5.3
Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
Frame = +1
Query: 55 NRIRITC*SYHHSVFNFRQYVRLSEEMIFFLIIFKAYFST---AVFWKKNFITHTNLNGD 225
NRI T S+F F + +L E+++ + F Y+ST F + FI +N G
Sbjct: 161 NRILTTVQKCQRSIFIFDEADKLPEQLLGAIKPFLDYYSTISGVDFRRSIFILLSNKGGG 220
Query: 226 EVS 234
E++
Sbjct: 221 EIA 223
>Z70034-13|CAC44293.1| 350|Caenorhabditis elegans Hypothetical
protein C18E9.11a protein.
Length = 350
Score = 27.5 bits (58), Expect = 5.3
Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
Frame = +1
Query: 55 NRIRITC*SYHHSVFNFRQYVRLSEEMIFFLIIFKAYFST---AVFWKKNFITHTNLNGD 225
NRI T S+F F + +L E+++ + F Y+ST F + FI +N G
Sbjct: 155 NRILTTVQKCQRSIFIFDEADKLPEQLLGAIKPFLDYYSTISGVDFRRSIFILLSNKGGG 214
Query: 226 EVS 234
E++
Sbjct: 215 EIA 217
>Z49910-11|CAC44292.1| 356|Caenorhabditis elegans Hypothetical
protein C18E9.11b protein.
Length = 356
Score = 27.5 bits (58), Expect = 5.3
Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
Frame = +1
Query: 55 NRIRITC*SYHHSVFNFRQYVRLSEEMIFFLIIFKAYFST---AVFWKKNFITHTNLNGD 225
NRI T S+F F + +L E+++ + F Y+ST F + FI +N G
Sbjct: 161 NRILTTVQKCQRSIFIFDEADKLPEQLLGAIKPFLDYYSTISGVDFRRSIFILLSNKGGG 220
Query: 226 EVS 234
E++
Sbjct: 221 EIA 223
>Z49910-10|CAC44291.1| 350|Caenorhabditis elegans Hypothetical
protein C18E9.11a protein.
Length = 350
Score = 27.5 bits (58), Expect = 5.3
Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
Frame = +1
Query: 55 NRIRITC*SYHHSVFNFRQYVRLSEEMIFFLIIFKAYFST---AVFWKKNFITHTNLNGD 225
NRI T S+F F + +L E+++ + F Y+ST F + FI +N G
Sbjct: 155 NRILTTVQKCQRSIFIFDEADKLPEQLLGAIKPFLDYYSTISGVDFRRSIFILLSNKGGG 214
Query: 226 EVS 234
E++
Sbjct: 215 EIA 217
>Z69383-4|CAA93411.2| 326|Caenorhabditis elegans Hypothetical
protein F13E9.9 protein.
Length = 326
Score = 27.1 bits (57), Expect = 7.0
Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
Frame = -2
Query: 324 AGGIVIPEKAQS--KVLHGEVVAVGPGARKENGD 229
+G IPEK K + G+ ++ PG +K+NGD
Sbjct: 207 SGAASIPEKVVDGVKSIPGKAKSILPGGKKKNGD 240
>AF125459-6|AAN60503.1| 219|Caenorhabditis elegans Hypothetical
protein Y25C1A.8b protein.
Length = 219
Score = 27.1 bits (57), Expect = 7.0
Identities = 16/63 (25%), Positives = 25/63 (39%)
Frame = -1
Query: 403 NGQCSKTIGSSSGPCPDQKS*SYNQNCRRHCHPREGSIQGFTRRSSSGRSWSPKRKWRLH 224
+ +CS + CP+ + + H RE + +RS+S R KR R
Sbjct: 102 DSECSCSCSGGECSCPESEDEKEKDRRKMHKTSRERDRESHRKRSNSPRDRDRKRGKRSR 161
Query: 223 PRS 215
RS
Sbjct: 162 SRS 164
>AF125459-5|AAD12844.1| 345|Caenorhabditis elegans Hypothetical
protein Y25C1A.8a protein.
Length = 345
Score = 27.1 bits (57), Expect = 7.0
Identities = 16/63 (25%), Positives = 25/63 (39%)
Frame = -1
Query: 403 NGQCSKTIGSSSGPCPDQKS*SYNQNCRRHCHPREGSIQGFTRRSSSGRSWSPKRKWRLH 224
+ +CS + CP+ + + H RE + +RS+S R KR R
Sbjct: 228 DSECSCSCSGGECSCPESEDEKEKDRRKMHKTSRERDRESHRKRSNSPRDRDRKRGKRSR 287
Query: 223 PRS 215
RS
Sbjct: 288 SRS 290
>Z73423-3|CAA97775.2| 327|Caenorhabditis elegans Hypothetical
protein C03A3.1a protein.
Length = 327
Score = 26.6 bits (56), Expect = 9.2
Identities = 11/42 (26%), Positives = 24/42 (57%)
Frame = +2
Query: 86 IIQFSIFASMSDSLKR*YSFSSFSRLTLVPPYSGRRTLSPTL 211
+ S+F +SD LK + S+ + L ++ ++ ++ L PT+
Sbjct: 17 LFMLSVFPKISDPLKLKFQISAHAVLAILFAFAAQQFLKPTI 58
>Z66498-2|CAA91291.2| 419|Caenorhabditis elegans Hypothetical
protein M195.2 protein.
Length = 419
Score = 26.6 bits (56), Expect = 9.2
Identities = 18/45 (40%), Positives = 20/45 (44%)
Frame = -1
Query: 415 IKNRNGQCSKTIGSSSGPCPDQKS*SYNQNCRRHCHPREGSIQGF 281
I NR CS +SS C Q S S +CR C P S GF
Sbjct: 11 ISNRVCSCSPLPSTSSCGC--QASSSCANSCRSTCRPTCSSSGGF 53
>U41023-1|AAA82340.1| 569|Caenorhabditis elegans Hypothetical
protein F53H8.3 protein.
Length = 569
Score = 26.6 bits (56), Expect = 9.2
Identities = 20/61 (32%), Positives = 28/61 (45%)
Frame = +1
Query: 91 SVFNFRQYVRLSEEMIFFLIIFKAYFSTAVFWKKNFITHTNLNGDEVSIFFSGSRTDRYY 270
S F Y R+S ++ + F + +T FWKKN I HT L +S G+ Y
Sbjct: 248 SFFCVYLYTRIS--LLGLYLNFANHLATTKFWKKNVI-HTALKLKLLSSKLRGNAKLHGY 304
Query: 271 F 273
F
Sbjct: 305 F 305
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,018,674
Number of Sequences: 27780
Number of extensions: 193131
Number of successful extensions: 527
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 512
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 526
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 871571276
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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