Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc11c15
         (278 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    21   3.7  
DQ325130-1|ABD14144.1|  174|Apis mellifera complementary sex det...    20   6.5  
DQ325129-1|ABD14143.1|  174|Apis mellifera complementary sex det...    20   6.5  
DQ325128-1|ABD14142.1|  174|Apis mellifera complementary sex det...    20   6.5  
DQ325127-1|ABD14141.1|  174|Apis mellifera complementary sex det...    20   6.5  
DQ325125-1|ABD14139.1|  174|Apis mellifera complementary sex det...    20   6.5  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    19   8.6  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    19   8.6  

>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 20.6 bits (41), Expect = 3.7
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = +1

Query: 76  LNFCITATAGTKFVINLNITKS*LLKFLIL 165
           L F + A +G K  + +NI  S  + FL++
Sbjct: 255 LAFYLPADSGEKIALCINILLSQTMFFLLI 284


>DQ325130-1|ABD14144.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 19.8 bits (39), Expect = 6.5
 Identities = 6/15 (40%), Positives = 9/15 (60%)
 Frame = +3

Query: 87  YNRNCWHKICY*FKY 131
           YN N + ++CY   Y
Sbjct: 94  YNNNNYKQLCYNINY 108


>DQ325129-1|ABD14143.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 19.8 bits (39), Expect = 6.5
 Identities = 6/15 (40%), Positives = 9/15 (60%)
 Frame = +3

Query: 87  YNRNCWHKICY*FKY 131
           YN N + ++CY   Y
Sbjct: 94  YNNNNYKQLCYNINY 108


>DQ325128-1|ABD14142.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 19.8 bits (39), Expect = 6.5
 Identities = 6/15 (40%), Positives = 9/15 (60%)
 Frame = +3

Query: 87  YNRNCWHKICY*FKY 131
           YN N + ++CY   Y
Sbjct: 94  YNNNNYKQLCYNINY 108


>DQ325127-1|ABD14141.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 19.8 bits (39), Expect = 6.5
 Identities = 6/15 (40%), Positives = 9/15 (60%)
 Frame = +3

Query: 87  YNRNCWHKICY*FKY 131
           YN N + ++CY   Y
Sbjct: 94  YNNNNYKQLCYNINY 108


>DQ325125-1|ABD14139.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 19.8 bits (39), Expect = 6.5
 Identities = 6/15 (40%), Positives = 9/15 (60%)
 Frame = +3

Query: 87  YNRNCWHKICY*FKY 131
           YN N + ++CY   Y
Sbjct: 94  YNNNNYKQLCYNINY 108


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 19.4 bits (38), Expect = 8.6
 Identities = 5/7 (71%), Positives = 6/7 (85%)
 Frame = +3

Query: 99  CWHKICY 119
           CW KIC+
Sbjct: 489 CWWKICW 495


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 19.4 bits (38), Expect = 8.6
 Identities = 5/7 (71%), Positives = 6/7 (85%)
 Frame = +3

Query: 99  CWHKICY 119
           CW KIC+
Sbjct: 542 CWWKICW 548


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 49,588
Number of Sequences: 438
Number of extensions: 793
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 49
effective length of database: 124,881
effective search space used:  5369883
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)