Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc11c13
         (370 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4A8.03c |ptc4||protein phosphatase 2C Ptc4|Schizosaccharomyc...    30   0.100
SPBC23G7.07c |||replication regulator |Schizosaccharomyces pombe...    29   0.17 
SPBC1703.09 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    29   0.23 
SPCC188.03 |cnd3||condensin subunit Cnd3 |Schizosaccharomyces po...    27   0.70 
SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter family|Sch...    26   1.6  
SPAC140.03 |arb1||argonaute binding protein 1|Schizosaccharomyce...    26   2.1  
SPCC4B3.04c |nte1||lysophospholipase|Schizosaccharomyces pombe|c...    24   6.5  
SPAC13G7.05 |||acyl-coA-sterol acyltransferase |Schizosaccharomy...    24   6.5  
SPBC146.09c |lsd1|swm1, saf110|histone demethylase SWIRM1|Schizo...    24   8.6  
SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|...    24   8.6  
SPBC4C3.06 |||actin cytoskeletal protein Syp1|Schizosaccharomyce...    24   8.6  

>SPAC4A8.03c |ptc4||protein phosphatase 2C Ptc4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 383

 Score = 30.3 bits (65), Expect = 0.100
 Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 3/61 (4%)
 Frame = -1

Query: 343 FNKRSIMNSGDDDA---TRLHYSNAHAKQTLATLFANRNHSSFYEYAITFVSTLLFKNNL 173
           F+ R+++ S D+D     RL+YS   A     T +A  +  S    A+  V+ +  KNNL
Sbjct: 140 FSLRTVLQSRDEDLLWRARLYYSFLQADMDYLTNYARPSPDSAVPGAVGTVAIITSKNNL 199

Query: 172 N 170
           +
Sbjct: 200 S 200


>SPBC23G7.07c |||replication regulator |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 277

 Score = 29.5 bits (63), Expect = 0.17
 Identities = 13/30 (43%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
 Frame = -1

Query: 133 NFEI-NVFGKSLLLSKFVNFCIANSDGVTI 47
           NF++  +FGK + L + +N+C AN  GV I
Sbjct: 179 NFKVAKLFGKHIRLEEHINYCKANKIGVGI 208


>SPBC1703.09 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 202

 Score = 29.1 bits (62), Expect = 0.23
 Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
 Frame = -1

Query: 193 LLFKNNLNLMVACNLINTL-INFEINVFGKS-LLLSKFVN 80
           LLFKN+L L+ AC  +NT      IN+     L+L +F N
Sbjct: 156 LLFKNSLVLLAACYFMNTTPSRLVINLIRSGYLILKRFAN 195


>SPCC188.03 |cnd3||condensin subunit Cnd3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 875

 Score = 27.5 bits (58), Expect = 0.70
 Identities = 17/46 (36%), Positives = 26/46 (56%)
 Frame = +3

Query: 72  MQKLTNLLSNKLLPNTLISKLINVLIKLHATIKFKLFLKSNVLTNV 209
           ++ LTN LS   LP++LIS  I +L KL ++      L   ++T V
Sbjct: 385 LKSLTNSLSTMALPDSLISLHIELLRKLCSSENDFCSLLVEIITEV 430


>SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter
           family|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 791

 Score = 26.2 bits (55), Expect = 1.6
 Identities = 11/33 (33%), Positives = 21/33 (63%)
 Frame = -1

Query: 175 LNLMVACNLINTLINFEINVFGKSLLLSKFVNF 77
           +N+ V+  L+NTLI  +I  FG ++ + + + F
Sbjct: 183 VNICVSAKLVNTLIIEQIKFFGVNIGIGRAILF 215


>SPAC140.03 |arb1||argonaute binding protein 1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 399

 Score = 25.8 bits (54), Expect = 2.1
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = +3

Query: 63  LLAMQKLTNLLSNKLLPNTLISKLINVLIKLH 158
           LLA Q  T L+SNK L   L  +L   L  +H
Sbjct: 204 LLAEQAETELISNKRLSTKLPGRLQRALASIH 235


>SPCC4B3.04c |nte1||lysophospholipase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1316

 Score = 24.2 bits (50), Expect = 6.5
 Identities = 17/63 (26%), Positives = 27/63 (42%)
 Frame = -1

Query: 286 SNAHAKQTLATLFANRNHSSFYEYAITFVSTLLFKNNLNLMVACNLINTLINFEINVFGK 107
           S+A   Q + T F     S+ YEY     +    + N N + A  L N + +  I+ F K
Sbjct: 296 SSAQIVQVILTRFQRVTFSTGYEYLGLSDAIFSIEKNFNSLTAYELPNYIRSDIIDDFKK 355

Query: 106 SLL 98
             +
Sbjct: 356 EAM 358


>SPAC13G7.05 |||acyl-coA-sterol acyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 537

 Score = 24.2 bits (50), Expect = 6.5
 Identities = 13/41 (31%), Positives = 23/41 (56%)
 Frame = +3

Query: 96  SNKLLPNTLISKLINVLIKLHATIKFKLFLKSNVLTNVMAY 218
           S+ +L   LIS L++  + L AT KF+ ++ +  L  +  Y
Sbjct: 460 SHAVLLTFLISALVHEFVMLLATGKFRCYILTFQLLQIPLY 500


>SPBC146.09c |lsd1|swm1, saf110|histone demethylase
           SWIRM1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1000

 Score = 23.8 bits (49), Expect = 8.6
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +3

Query: 63  LLAMQKLTNLLSNKLLPNTLI 125
           L A   L +L+ N +LPNTL+
Sbjct: 749 LAARDVLASLIGNVVLPNTLV 769


>SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 530

 Score = 23.8 bits (49), Expect = 8.6
 Identities = 16/49 (32%), Positives = 21/49 (42%)
 Frame = -1

Query: 331 SIMNSGDDDATRLHYSNAHAKQTLATLFANRNHSSFYEYAITFVSTLLF 185
           S+  S DD A+         +  + T  A    SS   Y  TFVST L+
Sbjct: 69  SVTESSDDGASTA-LPTTSTESVVVTTSAPAASSSATSYPATFVSTPLY 116


>SPBC4C3.06 |||actin cytoskeletal protein Syp1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 818

 Score = 23.8 bits (49), Expect = 8.6
 Identities = 11/36 (30%), Positives = 15/36 (41%)
 Frame = -1

Query: 322 NSGDDDATRLHYSNAHAKQTLATLFANRNHSSFYEY 215
           N  D    R HY + H+ Q       N N SS+  +
Sbjct: 329 NIDDSSIERRHYDSNHSSQIRDHPSTNNNASSYQNF 364


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,343,052
Number of Sequences: 5004
Number of extensions: 22921
Number of successful extensions: 62
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 62
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 116121426
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)