Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc11c13
         (370 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT021356-1|AAX33504.1|  255|Drosophila melanogaster LP15408p pro...    30   1.1  
AE014134-1567|AAO41173.1|  255|Drosophila melanogaster CG32988-P...    30   1.1  

>BT021356-1|AAX33504.1|  255|Drosophila melanogaster LP15408p
           protein.
          Length = 255

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 21/65 (32%), Positives = 35/65 (53%), Gaps = 1/65 (1%)
 Frame = +3

Query: 24  VWVNILC*IVTPSLLAMQKLTNLLSNK-LLPNTLISKLINVLIKLHATIKFKLFLKSNVL 200
           VWV ++  +V  SLLA+  L    S + LLPN + +  I +L+ +   +   LFL  N +
Sbjct: 129 VWVLLIAILVAGSLLALLHLYGAKSPEVLLPNIICTCCIFLLLTVTMIVLLILFLIINDM 188

Query: 201 TNVMA 215
             ++A
Sbjct: 189 RYLLA 193


>AE014134-1567|AAO41173.1|  255|Drosophila melanogaster CG32988-PA
           protein.
          Length = 255

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 21/65 (32%), Positives = 35/65 (53%), Gaps = 1/65 (1%)
 Frame = +3

Query: 24  VWVNILC*IVTPSLLAMQKLTNLLSNK-LLPNTLISKLINVLIKLHATIKFKLFLKSNVL 200
           VWV ++  +V  SLLA+  L    S + LLPN + +  I +L+ +   +   LFL  N +
Sbjct: 129 VWVLLIAILVAGSLLALLHLYGAKSPEVLLPNIICTCCIFLLLTVTMIVLLILFLIINDM 188

Query: 201 TNVMA 215
             ++A
Sbjct: 189 RYLLA 193


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,673,736
Number of Sequences: 53049
Number of extensions: 227560
Number of successful extensions: 495
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 495
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 495
length of database: 24,988,368
effective HSP length: 76
effective length of database: 20,956,644
effective search space used: 964005624
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)