Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc11c10
(877 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB17E12.07c |sen2||tRNA-splicing endonuclease subunit Sen2|Sc... 31 0.22
SPAC31G5.13 |rpn11|pad1, sks1, bfr2, mts5|19S proteasome regulat... 30 0.50
SPAC23G3.06 |||U3 snoRNP protein Nop58 |Schizosaccharomyces pomb... 30 0.50
SPBC1711.14 |rec15||meiotic recombination protein Rec15|Schizosa... 29 0.66
SPCC1259.11c |gyp2||GTPase activating protein Gyp2 |Schizosaccha... 27 2.7
SPBC16G5.15c |fkh2||fork head transcription factor Fkh2 |Schizos... 27 3.5
SPAC3G6.09c |tps2||trehalose-phosphate synthase Tps2 |Schizosacc... 27 3.5
SPAC22H10.10 |alp21|sto1|tubulin specific chaperone cofactor E|S... 27 3.5
SPCC550.05 |nse1||Smc5-6 complex non-SMC subunit 1|Schizosacchar... 27 4.6
SPBC20F10.08c |||conserved eukaryotic protein|Schizosaccharomyce... 27 4.6
SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces pombe... 27 4.6
SPBC18E5.03c |sim4||kinetochore protein Sim4 |Schizosaccharomyce... 27 4.6
SPAC9G1.11c |spn4||septin Spn4|Schizosaccharomyces pombe|chr 1||... 26 6.1
SPAC4F8.14c |hcs1|hcs|3-hydroxy-3-methylglutaryl-CoA synthase|Sc... 26 8.1
SPBC16A3.14 |||mitochondrial ribosomal protein subunit S26|Schiz... 26 8.1
SPCC1620.04c |mug55||Cdc20/Fizzy family WD repeat protein|Schizo... 26 8.1
SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium tra... 26 8.1
>SPAPB17E12.07c |sen2||tRNA-splicing endonuclease subunit
Sen2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 380
Score = 31.1 bits (67), Expect = 0.22
Identities = 30/114 (26%), Positives = 50/114 (43%), Gaps = 10/114 (8%)
Frame = -2
Query: 531 RLIGNLMNNSVSSTFLSDDTFLLMPCTNPPAHTSNCYNNSI-----YKEGRWVANTDSSQ 367
+L N++ NSV+ L+ D L +P N + + +++ WV +
Sbjct: 218 KLFANIVANSVA---LTHDYSLQQSHEDPIIEPDNKFLTELAAYFYFRQQGWVVKNGTKF 274
Query: 366 CIDFSNYKELAIDDDVEF---WIPTIGN-TTYHDSWKDASGWS-FIAQQKSNLI 220
+DF YK+ + EF IP +GN Y+ W + + IAQ K +LI
Sbjct: 275 SVDFLLYKKGPVFSHAEFAILLIPCVGNKQKYNMQWHEVHCLNRVIAQVKKSLI 328
>SPAC31G5.13 |rpn11|pad1, sks1, bfr2, mts5|19S proteasome regulatory
subunit Rpn11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 308
Score = 29.9 bits (64), Expect = 0.50
Identities = 12/47 (25%), Positives = 27/47 (57%)
Frame = +1
Query: 526 QTLVHLGHGNYQVVQHIVYLVDMRMHQLNVHFQQIVFVHQLLLNMHQ 666
QT +LGH N +Q +++ + + L +++++ +LLN+H+
Sbjct: 175 QTTSNLGHINKPSIQALIHGLGRHYYSLRINYKKTELEEIMLLNLHK 221
>SPAC23G3.06 |||U3 snoRNP protein Nop58 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 508
Score = 29.9 bits (64), Expect = 0.50
Identities = 12/40 (30%), Positives = 26/40 (65%)
Frame = -2
Query: 231 SNLITTMENTKFGGVGTSLNDITSMAEGELAAKLTSFMFG 112
SNL+ KF +L++++++ EG++++KL+S + G
Sbjct: 38 SNLLKLQSFAKFESTVDALDNVSALVEGKVSSKLSSLLEG 77
>SPBC1711.14 |rec15||meiotic recombination protein
Rec15|Schizosaccharomyces pombe|chr 2|||Manual
Length = 180
Score = 29.5 bits (63), Expect = 0.66
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = +1
Query: 514 EIANQTLVHLGHGNYQVVQHIVYLVDMRMHQLNVHFQQI 630
E+ NQT+ LG +V Q LV ++Q+N+ QQ+
Sbjct: 45 EVVNQTIGQLGRSISEVQQQNSQLVLQSLNQINMSMQQV 83
>SPCC1259.11c |gyp2||GTPase activating protein Gyp2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 720
Score = 27.5 bits (58), Expect = 2.7
Identities = 15/49 (30%), Positives = 22/49 (44%)
Frame = +2
Query: 449 LVHGISKNVSSDKNVEETELFMRLPIKRSSTLATETIRSCSILFILLIC 595
++HG+ + + E F +KR TL TE + S ILL C
Sbjct: 603 IIHGLERLKADIALHSEILCFQLYDLKRDGTLRTEEVVELSESLILLCC 651
>SPBC16G5.15c |fkh2||fork head transcription factor Fkh2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 642
Score = 27.1 bits (57), Expect = 3.5
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = -2
Query: 849 VTREHCLIDNDIYDLSKNTWNC 784
V+R+H +++ YDL TWNC
Sbjct: 127 VSRKHAVVE---YDLDDQTWNC 145
>SPAC3G6.09c |tps2||trehalose-phosphate synthase Tps2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 849
Score = 27.1 bits (57), Expect = 3.5
Identities = 10/33 (30%), Positives = 18/33 (54%)
Frame = -2
Query: 348 YKELAIDDDVEFWIPTIGNTTYHDSWKDASGWS 250
Y + + D + + IPT+ H+ WK+ + WS
Sbjct: 172 YADSVLWDVLHYRIPTLDGYQQHNLWKNFTRWS 204
>SPAC22H10.10 |alp21|sto1|tubulin specific chaperone cofactor
E|Schizosaccharomyces pombe|chr 1|||Manual
Length = 511
Score = 27.1 bits (57), Expect = 3.5
Identities = 26/116 (22%), Positives = 57/116 (49%), Gaps = 3/116 (2%)
Frame = -2
Query: 651 EELMYENDLLKMNIELMHAHINKINNMLHDLIVSVAKVDERL--IGNL-MNNSVSSTFLS 481
E++ E + K+ E++ +++ N+ H+ + K+ +L + NL +++++ S F+S
Sbjct: 128 EDIEIEYEYSKILPEVIDLDLSR--NLFHEFF-PILKLCSQLPSLRNLTLDSNLFSNFIS 184
Query: 480 DDTFLLMPCTNPPAHTSNCYNNSIYKEGRWVANTDSSQCIDFSNYKELAIDDDVEF 313
+T LL+P + C NS K+ +W+ T S + + E+ + F
Sbjct: 185 SNTVLLIPHLT-QLSVNGCGLNS--KDVQWITETFPSLEVLYLEANEIILSKATSF 237
>SPCC550.05 |nse1||Smc5-6 complex non-SMC subunit
1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 232
Score = 26.6 bits (56), Expect = 4.6
Identities = 16/50 (32%), Positives = 25/50 (50%)
Frame = -2
Query: 591 INKINNMLHDLIVSVAKVDERLIGNLMNNSVSSTFLSDDTFLLMPCTNPP 442
IN++NN LH+ + +V ++L G L ++ LS D M PP
Sbjct: 50 INELNNSLHNFDFKIKRVQDQLDGRL---TLHFQNLSGDPVSQMATPYPP 96
>SPBC20F10.08c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 747
Score = 26.6 bits (56), Expect = 4.6
Identities = 9/37 (24%), Positives = 20/37 (54%)
Frame = +1
Query: 556 YQVVQHIVYLVDMRMHQLNVHFQQIVFVHQLLLNMHQ 666
Y ++ ++ + LN+H+ ++ +H LLN H+
Sbjct: 105 YNILLPLLLTPSLLQGPLNLHYADLLLLHLYLLNCHE 141
>SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 972
Score = 26.6 bits (56), Expect = 4.6
Identities = 19/98 (19%), Positives = 48/98 (48%), Gaps = 4/98 (4%)
Frame = -2
Query: 831 LIDNDIYDLSKNTWNCRFNRCIKRKVEHQVKKRPPTWRHNVR-AKYTEG---DTATKGDL 664
L++ + K+T++ + IK + + ++KK P R ++ +Y E D + +
Sbjct: 144 LVNRNSDPSEKSTFSLNILKAIK-ETDEEIKKNPGKARLWIKMCEYQERLLFDEFRRSNS 202
Query: 663 MHIQEELMYENDLLKMNIELMHAHINKINNMLHDLIVS 550
I+ +L EN+ + + ++ + ++ H+++VS
Sbjct: 203 DDIKGKLKIENNSRSVKLSILEKALKEVKGCDHEILVS 240
>SPBC18E5.03c |sim4||kinetochore protein Sim4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 277
Score = 26.6 bits (56), Expect = 4.6
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = -2
Query: 828 IDNDIYDLSKNTWNCRFNRCIKRKVEHQVKK 736
IDN+I DL KN + + + ++ HQ+KK
Sbjct: 94 IDNNISDLKKNLHSNKKLEAVLKEELHQIKK 124
>SPAC9G1.11c |spn4||septin Spn4|Schizosaccharomyces pombe|chr
1|||Manual
Length = 380
Score = 26.2 bits (55), Expect = 6.1
Identities = 12/45 (26%), Positives = 22/45 (48%)
Frame = -2
Query: 714 NVRAKYTEGDTATKGDLMHIQEELMYENDLLKMNIELMHAHINKI 580
N+R ++TE + ++ L+ E D L ++E H I +I
Sbjct: 320 NLRKRFTEQVRVEETRFRQWEQRLIAERDSLNKDLEAQHVQIKQI 364
>SPAC4F8.14c |hcs1|hcs|3-hydroxy-3-methylglutaryl-CoA
synthase|Schizosaccharomyces pombe|chr 1|||Manual
Length = 447
Score = 25.8 bits (54), Expect = 8.1
Identities = 17/55 (30%), Positives = 26/55 (47%)
Frame = +1
Query: 133 FGGQFAFSHGSDVVQTGADAAKLGVLHGGYEIAFLLGNKRPTAGIFPTVVIGCVA 297
+GG A + D +++ A + G++ G + GN RPT G GCVA
Sbjct: 119 YGGVNALFNTIDWIESSAWDGRDGIVVAGDIALYAKGNARPTGG------AGCVA 167
>SPBC16A3.14 |||mitochondrial ribosomal protein subunit
S26|Schizosaccharomyces pombe|chr 2|||Manual
Length = 277
Score = 25.8 bits (54), Expect = 8.1
Identities = 9/33 (27%), Positives = 17/33 (51%)
Frame = -2
Query: 300 IGNTTYHDSWKDASGWSFIAQQKSNLITTMENT 202
+ + Y D+W D WS I ++ +N + E +
Sbjct: 241 LNRSRYIDTWFDCIDWSVIEERLTNSLANSEQS 273
>SPCC1620.04c |mug55||Cdc20/Fizzy family WD repeat
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 509
Score = 25.8 bits (54), Expect = 8.1
Identities = 9/28 (32%), Positives = 17/28 (60%)
Frame = -2
Query: 438 HTSNCYNNSIYKEGRWVANTDSSQCIDF 355
HT Y+N+ ++EG +V +S + + F
Sbjct: 438 HTHRKYSNNTWEEGEYVVVANSDETVKF 465
>SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium
transporting Cta4 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1211
Score = 25.8 bits (54), Expect = 8.1
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = +1
Query: 238 LGNKRPTAGIFPTVVIGCV 294
L +RP AGIF T +IG V
Sbjct: 1046 LSKERPQAGIFNTYIIGSV 1064
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,525,375
Number of Sequences: 5004
Number of extensions: 73886
Number of successful extensions: 295
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 261
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 295
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 438479610
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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