Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc11c09
(314 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L11567-1|AAA62148.1| 97|Homo sapiens ribosomal protein L37 pro... 134 4e-32
D23661-1|BAA04888.1| 97|Homo sapiens ribosomal protein L37 pro... 134 4e-32
CR456890-1|CAG33171.1| 97|Homo sapiens RPL37 protein. 134 4e-32
BC084576-1|AAH84576.1| 97|Homo sapiens RPL37 protein protein. 134 4e-32
BC079477-1|AAH79477.1| 97|Homo sapiens ribosomal protein L37 p... 134 4e-32
AB061834-1|BAB79472.1| 97|Homo sapiens ribosomal protein L37 p... 134 4e-32
S79979-1|AAB47039.2| 97|Homo sapiens ribosomal protein L37 pro... 132 2e-31
AB007183-1|BAA25842.1| 27|Homo sapiens ribosomal protein L37 p... 30 1.6
AL355305-3|CAI14559.1| 436|Homo sapiens protein ( Human DNA seq... 29 2.2
AL355305-2|CAI14560.1| 360|Homo sapiens protein ( Human DNA seq... 29 2.2
BC033448-1|AAH33448.1| 460|Homo sapiens chromosome 6 open readi... 28 5.0
U05877-1|AAA16956.1| 337|Homo sapiens AF-1 protein. 27 8.8
U05875-1|AAA16955.1| 337|Homo sapiens AF-1 protein. 27 8.8
BC003624-1|AAH03624.1| 337|Homo sapiens interferon gamma recept... 27 8.8
AY644470-1|AAT45458.1| 337|Homo sapiens interferon gamma recept... 27 8.8
>L11567-1|AAA62148.1| 97|Homo sapiens ribosomal protein L37
protein.
Length = 97
Score = 134 bits (325), Expect = 4e-32
Identities = 62/94 (65%), Positives = 71/94 (75%), Gaps = 1/94 (1%)
Frame = -3
Query: 288 MTKGTSSFGKRRNKTHTLCRRCGRSSYHIQKSKCAQCGYPAAKLRSYHWSVKAXXXXXXX 109
MTKGTSSFGKRRNKTHTLCRRCG +YH+QKS C +CGYPA + R Y+WS KA
Sbjct: 1 MTKGTSSFGKRRNKTHTLCRRCGSKAYHLQKSTCGKCGYPAKRKRKYNWSAKAKRRNTTG 60
Query: 108 XXRMRHLKIVRRRFRNGFKEG-KPTPPKKAVASS 10
RMRHLKIV RRFR+GF+EG P P + AVA+S
Sbjct: 61 TGRMRHLKIVYRRFRHGFREGTTPKPKRAAVAAS 94
>D23661-1|BAA04888.1| 97|Homo sapiens ribosomal protein L37
protein.
Length = 97
Score = 134 bits (325), Expect = 4e-32
Identities = 62/94 (65%), Positives = 71/94 (75%), Gaps = 1/94 (1%)
Frame = -3
Query: 288 MTKGTSSFGKRRNKTHTLCRRCGRSSYHIQKSKCAQCGYPAAKLRSYHWSVKAXXXXXXX 109
MTKGTSSFGKRRNKTHTLCRRCG +YH+QKS C +CGYPA + R Y+WS KA
Sbjct: 1 MTKGTSSFGKRRNKTHTLCRRCGSKAYHLQKSTCGKCGYPAKRKRKYNWSAKAKRRNTTG 60
Query: 108 XXRMRHLKIVRRRFRNGFKEG-KPTPPKKAVASS 10
RMRHLKIV RRFR+GF+EG P P + AVA+S
Sbjct: 61 TGRMRHLKIVYRRFRHGFREGTTPKPKRAAVAAS 94
>CR456890-1|CAG33171.1| 97|Homo sapiens RPL37 protein.
Length = 97
Score = 134 bits (325), Expect = 4e-32
Identities = 62/94 (65%), Positives = 71/94 (75%), Gaps = 1/94 (1%)
Frame = -3
Query: 288 MTKGTSSFGKRRNKTHTLCRRCGRSSYHIQKSKCAQCGYPAAKLRSYHWSVKAXXXXXXX 109
MTKGTSSFGKRRNKTHTLCRRCG +YH+QKS C +CGYPA + R Y+WS KA
Sbjct: 1 MTKGTSSFGKRRNKTHTLCRRCGSKAYHLQKSTCGKCGYPAKRKRKYNWSAKAKRRNTTG 60
Query: 108 XXRMRHLKIVRRRFRNGFKEG-KPTPPKKAVASS 10
RMRHLKIV RRFR+GF+EG P P + AVA+S
Sbjct: 61 TGRMRHLKIVYRRFRHGFREGTTPKPKRAAVAAS 94
>BC084576-1|AAH84576.1| 97|Homo sapiens RPL37 protein protein.
Length = 97
Score = 134 bits (325), Expect = 4e-32
Identities = 62/94 (65%), Positives = 71/94 (75%), Gaps = 1/94 (1%)
Frame = -3
Query: 288 MTKGTSSFGKRRNKTHTLCRRCGRSSYHIQKSKCAQCGYPAAKLRSYHWSVKAXXXXXXX 109
MTKGTSSFGKRRNKTHTLCRRCG +YH+QKS C +CGYPA + R Y+WS KA
Sbjct: 1 MTKGTSSFGKRRNKTHTLCRRCGSKAYHLQKSTCGKCGYPAKRKRKYNWSAKAKRRNTTG 60
Query: 108 XXRMRHLKIVRRRFRNGFKEG-KPTPPKKAVASS 10
RMRHLKIV RRFR+GF+EG P P + AVA+S
Sbjct: 61 TGRMRHLKIVYRRFRHGFREGTTPKPKRAAVAAS 94
>BC079477-1|AAH79477.1| 97|Homo sapiens ribosomal protein L37
protein.
Length = 97
Score = 134 bits (325), Expect = 4e-32
Identities = 62/94 (65%), Positives = 71/94 (75%), Gaps = 1/94 (1%)
Frame = -3
Query: 288 MTKGTSSFGKRRNKTHTLCRRCGRSSYHIQKSKCAQCGYPAAKLRSYHWSVKAXXXXXXX 109
MTKGTSSFGKRRNKTHTLCRRCG +YH+QKS C +CGYPA + R Y+WS KA
Sbjct: 1 MTKGTSSFGKRRNKTHTLCRRCGSKAYHLQKSTCGKCGYPAKRKRKYNWSAKAKRRNTTG 60
Query: 108 XXRMRHLKIVRRRFRNGFKEG-KPTPPKKAVASS 10
RMRHLKIV RRFR+GF+EG P P + AVA+S
Sbjct: 61 TGRMRHLKIVYRRFRHGFREGTTPKPKRAAVAAS 94
>AB061834-1|BAB79472.1| 97|Homo sapiens ribosomal protein L37
protein.
Length = 97
Score = 134 bits (325), Expect = 4e-32
Identities = 62/94 (65%), Positives = 71/94 (75%), Gaps = 1/94 (1%)
Frame = -3
Query: 288 MTKGTSSFGKRRNKTHTLCRRCGRSSYHIQKSKCAQCGYPAAKLRSYHWSVKAXXXXXXX 109
MTKGTSSFGKRRNKTHTLCRRCG +YH+QKS C +CGYPA + R Y+WS KA
Sbjct: 1 MTKGTSSFGKRRNKTHTLCRRCGSKAYHLQKSTCGKCGYPAKRKRKYNWSAKAKRRNTTG 60
Query: 108 XXRMRHLKIVRRRFRNGFKEG-KPTPPKKAVASS 10
RMRHLKIV RRFR+GF+EG P P + AVA+S
Sbjct: 61 TGRMRHLKIVYRRFRHGFREGTTPKPKRAAVAAS 94
>S79979-1|AAB47039.2| 97|Homo sapiens ribosomal protein L37
protein.
Length = 97
Score = 132 bits (319), Expect = 2e-31
Identities = 61/94 (64%), Positives = 70/94 (74%), Gaps = 1/94 (1%)
Frame = -3
Query: 288 MTKGTSSFGKRRNKTHTLCRRCGRSSYHIQKSKCAQCGYPAAKLRSYHWSVKAXXXXXXX 109
MTKGTSSFGKRRNKTHTLCRRCG +YH+QKS C +CGYPA + R Y+WS KA
Sbjct: 1 MTKGTSSFGKRRNKTHTLCRRCGSKAYHLQKSTCGKCGYPAKRKRKYNWSAKAKRRNTTG 60
Query: 108 XXRMRHLKIVRRRFRNGFKEG-KPTPPKKAVASS 10
RM HLKIV RRFR+GF+EG P P + AVA+S
Sbjct: 61 TGRMSHLKIVYRRFRHGFREGTTPKPKRAAVAAS 94
>AB007183-1|BAA25842.1| 27|Homo sapiens ribosomal protein L37
protein.
Length = 27
Score = 29.9 bits (64), Expect = 1.6
Identities = 15/27 (55%), Positives = 16/27 (59%)
Frame = -3
Query: 147 HWSVKAXXXXXXXXXRMRHLKIVRRRF 67
+WS KA RMRHLKIV RRF
Sbjct: 1 NWSAKAKRRNTTGTGRMRHLKIVYRRF 27
>AL355305-3|CAI14559.1| 436|Homo sapiens protein ( Human DNA
sequence from clone RP11-487F23 on chromosome 6. ).
Length = 436
Score = 29.5 bits (63), Expect = 2.2
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = -2
Query: 196 IKMRPMWISCSKITILPLVSEG*AQEDYW 110
IK RP W CSK LP V+E ++ W
Sbjct: 253 IKRRPPWQICSKFGALPFVAEKPSRTTSW 281
>AL355305-2|CAI14560.1| 360|Homo sapiens protein ( Human DNA
sequence from clone RP11-487F23 on chromosome 6. ).
Length = 360
Score = 29.5 bits (63), Expect = 2.2
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = -2
Query: 196 IKMRPMWISCSKITILPLVSEG*AQEDYW 110
IK RP W CSK LP V+E ++ W
Sbjct: 177 IKRRPPWQICSKFGALPFVAEKPSRTTSW 205
>BC033448-1|AAH33448.1| 460|Homo sapiens chromosome 6 open reading
frame 182 protein.
Length = 460
Score = 28.3 bits (60), Expect = 5.0
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = -2
Query: 196 IKMRPMWISCSKITILPLVSE 134
IK RP W CSK LP V+E
Sbjct: 253 IKRRPPWQICSKFGALPFVAE 273
>U05877-1|AAA16956.1| 337|Homo sapiens AF-1 protein.
Length = 337
Score = 27.5 bits (58), Expect = 8.8
Identities = 7/19 (36%), Positives = 14/19 (73%)
Frame = +1
Query: 40 WFPFFKTITEAPPDNLQMT 96
WF ++ +T PP+N+++T
Sbjct: 131 WFQHYRNVTVGPPENIEVT 149
>U05875-1|AAA16955.1| 337|Homo sapiens AF-1 protein.
Length = 337
Score = 27.5 bits (58), Expect = 8.8
Identities = 7/19 (36%), Positives = 14/19 (73%)
Frame = +1
Query: 40 WFPFFKTITEAPPDNLQMT 96
WF ++ +T PP+N+++T
Sbjct: 131 WFQHYRNVTVGPPENIEVT 149
>BC003624-1|AAH03624.1| 337|Homo sapiens interferon gamma receptor
2 (interferon gamma transducer 1) protein.
Length = 337
Score = 27.5 bits (58), Expect = 8.8
Identities = 7/19 (36%), Positives = 14/19 (73%)
Frame = +1
Query: 40 WFPFFKTITEAPPDNLQMT 96
WF ++ +T PP+N+++T
Sbjct: 131 WFQHYRNVTVGPPENIEVT 149
>AY644470-1|AAT45458.1| 337|Homo sapiens interferon gamma receptor
2 (interferon gamma transducer 1) protein.
Length = 337
Score = 27.5 bits (58), Expect = 8.8
Identities = 7/19 (36%), Positives = 14/19 (73%)
Frame = +1
Query: 40 WFPFFKTITEAPPDNLQMT 96
WF ++ +T PP+N+++T
Sbjct: 131 WFQHYRNVTVGPPENIEVT 149
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 45,552,911
Number of Sequences: 237096
Number of extensions: 820340
Number of successful extensions: 1673
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1669
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1673
length of database: 76,859,062
effective HSP length: 79
effective length of database: 58,128,478
effective search space used: 1453211950
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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