Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc11c08
         (901 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC30D10.10c |tor1||phosphatidylinositol kinase Tor1|Schizosacc...    27   2.7  
SPAC19A8.04 |erg5||C-22 sterol desaturase Erg5 |Schizosaccharomy...    27   3.6  
SPBC3F6.03 |trr1|caf4|thioredoxin reductase Trr1|Schizosaccharom...    26   6.3  
SPBC649.05 |cut12|stf1|spindle pole body protein Cut12 |Schizosa...    26   8.4  
SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C |Schizosaccharom...    26   8.4  
SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual      26   8.4  

>SPBC30D10.10c |tor1||phosphatidylinositol kinase
            Tor1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2335

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 30/114 (26%), Positives = 45/114 (39%), Gaps = 5/114 (4%)
 Frame = -3

Query: 827  INKNQNDSAKYEINKFSDLSKDETIAKYTGLSLPTQTQNFCKVILL-DQPPGKGPLEFDW 651
            I+ +     +Y +    DL +DE + +  GL         C  +L  D    K  L  + 
Sbjct: 1973 IHGSDGKDYQYVLKGHEDLRQDERVMQLFGL---------CNTLLTTDSETFKRRLNIE- 2022

Query: 650  RRLNKVTSVKNQGMCGACWAFATLGSLESQFAIKHNELINLSEQQMI----DCD 501
             R   +    N G+ G      TL  L  +F  K N L+NL  + M+    DCD
Sbjct: 2023 -RYTVIPLSPNSGLLGWVPHSDTLHFLIKEFRSKRNILLNLEHRMMLQMAPDCD 2075


>SPAC19A8.04 |erg5||C-22 sterol desaturase Erg5 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 541

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 12/42 (28%), Positives = 23/42 (54%)
 Frame = -3

Query: 281 IPMAIDAADIVNYKQGIIKYCFDSGLNHAVLLVGYGVENNIP 156
           +P+++D  + + Y + ++K C    L   VL+V Y V+   P
Sbjct: 359 VPLSLDLMEKMTYTRAVVKECL--RLRPPVLMVPYRVKKAFP 398


>SPBC3F6.03 |trr1|caf4|thioredoxin reductase
           Trr1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 322

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +3

Query: 75  TSVYVLLYPEKSVLSPIRAPSVFKGPIRNVVFNTI 179
           + VYVL+  +K   SPI A  +   P   V++NT+
Sbjct: 178 SKVYVLVRRDKLRASPIMAKRLLANPKVEVLWNTV 212


>SPBC649.05 |cut12|stf1|spindle pole body protein Cut12
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 548

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 8/28 (28%), Positives = 19/28 (67%)
 Frame = -3

Query: 377 NSNKFLVQVKDCYRYIIVYEEKLKDLLR 294
           N+N +   +KDC+R ++    K+K++++
Sbjct: 198 NNNDWSSLMKDCFRDVVNNNRKMKEIIK 225


>SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1016

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 12/53 (22%), Positives = 26/53 (49%)
 Frame = -3

Query: 839 LNEIINKNQNDSAKYEINKFSDLSKDETIAKYTGLSLPTQTQNFCKVILLDQP 681
           L++++ K +    + E++    +S D+ I +   + LP+   N  K    D+P
Sbjct: 294 LSDLVEKQRRKKVEQEVSDKGWVSADKMINQRLSIFLPSALNNISKPESTDRP 346


>SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1489

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = +3

Query: 762  VFGQIREFVYFIFGRIVLVFIDNF 833
            +FG I +FVY+ +   VLV  DNF
Sbjct: 1027 IFGVIGKFVYWAYVAPVLVSPDNF 1050


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,789,450
Number of Sequences: 5004
Number of extensions: 81274
Number of successful extensions: 251
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 235
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 251
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 454497130
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)