Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc11c06
(861 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC576.04 |||bax inhibitor-like protein|Schizosaccharomyces pom... 51 2e-07
SPAC12G12.13c |cid14||poly|Schizosaccharomyces pombe|chr 1|||Manual 30 0.49
SPAC1F3.07c |rsc58||RSC complex subunit Rsc58|Schizosaccharomyce... 28 2.0
SPAC1B1.03c |kap95||karyopherin Kap95|Schizosaccharomyces pombe|... 27 2.6
SPBC4F6.12 |||LIM domain|Schizosaccharomyces pombe|chr 2|||Manual 27 2.6
SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein Mam... 27 3.4
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch... 27 3.4
SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regula... 27 3.4
SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple... 27 3.4
SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit Pa... 26 6.0
SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p... 26 6.0
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 26 7.9
SPBC4C3.06 |||actin cytoskeletal protein Syp1|Schizosaccharomyce... 26 7.9
>SPCC576.04 |||bax inhibitor-like protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 266
Score = 51.2 bits (117), Expect = 2e-07
Identities = 48/216 (22%), Positives = 92/216 (42%), Gaps = 2/216 (0%)
Frame = -1
Query: 831 IKTTYGYIAGSLVLTAGSAVAVFRTPALLNLVARNGWMSII-VTLGLMIGSGMVVRGMEY 655
++ Y + L +T+ + PA V + W I+ + L++ G++++ Y
Sbjct: 59 LRKVYAILTAQLFVTSLFGGIFYLHPAFSFWVQMHPWFLILNFFISLVVLFGLIMKPYSY 118
Query: 654 TPGFGAKQLAWMAHTGIMGAVIAP-ICFLGGPILMRAAWYTAGVVGGLSTIAVCAPSGEF 478
+ + T + G + I F I++ A + T GV L+ + +F
Sbjct: 119 PRNY----IFLFLFTALEGLTLGTAITFFSARIILEAVFITLGVFVALTAFTFQS-KWDF 173
Query: 477 LNMRAPLAMGLGAVFAASLAGMFLPPTXXXXXXXXXXXXXXXLIVFGGFLLYDTQSIIKR 298
+ L + L ++ L F+P T +VF G++L+DT +I+ R
Sbjct: 174 SRLGGFLYVSLWSLILTPLIFFFVPSTPFIDMAFAGFGT----LVFCGYILFDTYNILHR 229
Query: 297 AEMHPPYGFKPYDPINSAISVYLDVLNIFMRIAMIL 190
+ P + I S++ +YLD +N+F+RI IL
Sbjct: 230 --------YSPEEFIMSSLMLYLDFINLFIRILQIL 257
>SPAC12G12.13c |cid14||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 684
Score = 29.9 bits (64), Expect = 0.49
Identities = 18/58 (31%), Positives = 28/58 (48%)
Frame = +2
Query: 668 LTTMPEPIIRPNVTIMDIHPFLATKFRSAGVLKTATALPAVSTKEPAMYPYVVFIRSF 841
+TT PII+ + +H ++ F G LKT + K PA+ P V+ I+ F
Sbjct: 336 ITTANVPIIKFVDPLTKVHVDIS--FNQPGGLKTCLVVNGFMKKYPALRPLVIIIKHF 391
>SPAC1F3.07c |rsc58||RSC complex subunit Rsc58|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 403
Score = 27.9 bits (59), Expect = 2.0
Identities = 12/38 (31%), Positives = 22/38 (57%)
Frame = +2
Query: 332 NPPNTIKPPYKLSEYNPAPRALVGGRNIPARDAANTAP 445
+PP+T KPP + E+NP+ L + + + ++ AP
Sbjct: 178 SPPSTAKPPASVIEFNPSLAKLPTVKYLQSGPFSSIAP 215
>SPAC1B1.03c |kap95||karyopherin Kap95|Schizosaccharomyces pombe|chr
1|||Manual
Length = 863
Score = 27.5 bits (58), Expect = 2.6
Identities = 16/58 (27%), Positives = 26/58 (44%)
Frame = -1
Query: 852 PQYVKERIKTTYGYIAGSLVLTAGSAVAVFRTPALLNLVARNGWMSIIVTLGLMIGSG 679
P +K+++K+ GS AG + A +A N W ++VTL +G G
Sbjct: 84 PVEIKQQVKSLALQTLGSSEHQAGQSAAQLVAAIAAYELATNQWPDLMVTLVANVGEG 141
>SPBC4F6.12 |||LIM domain|Schizosaccharomyces pombe|chr 2|||Manual
Length = 438
Score = 27.5 bits (58), Expect = 2.6
Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Frame = -3
Query: 538 HCWCSWWSE-YNCSVCTIWRVLEHACSTCYGSRSCVCC 428
H +C+ SE +N ++ I+R + C TCY ++ V C
Sbjct: 341 HHFCAGCSEVFNVNIPCIYRDDLYWCQTCYDNKYAVKC 378
>SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein
Mam3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1082
Score = 27.1 bits (57), Expect = 3.4
Identities = 33/130 (25%), Positives = 56/130 (43%), Gaps = 13/130 (10%)
Frame = -1
Query: 852 PQYVKERIKT-TYGY---IAGSLVLTAGSAVAVFRTPALLNLVARNGWMSIIVTLGLMIG 685
P +V E + + + G+ IA + TAG+ V TP+ + +G + T+ IG
Sbjct: 825 PSWVTETVTSGSVGFTTTIATPVGTTAGTVVVDVPTPSWVTETVTSGSVGFTTTIATPIG 884
Query: 684 S--GMVVRGMEYTPGFGAKQLAWMAHTGIMGAVIAPICFLGGPILM---RAAW----YTA 532
S G V+ + TP + + G + P+ G +L+ +W T+
Sbjct: 885 STAGTVLVDIP-TPSW-VTETVTSGSVGFTTTIATPVGTTAGTVLVDIPTPSWVTETVTS 942
Query: 531 GVVGGLSTIA 502
G VG +TIA
Sbjct: 943 GSVGFTTTIA 952
Score = 26.6 bits (56), Expect = 4.5
Identities = 32/130 (24%), Positives = 56/130 (43%), Gaps = 13/130 (10%)
Frame = -1
Query: 852 PQYVKERIKT-TYGY---IAGSLVLTAGSAVAVFRTPALLNLVARNGWMSIIVTLGLMIG 685
P ++ E + + + G+ IA + TAG+ + TP+ + +G + T+ IG
Sbjct: 681 PSWITETVTSGSVGFTTTIATPIGTTAGTVLVDIPTPSWVTETVTSGSIGFTTTIATPIG 740
Query: 684 S--GMVVRGMEYTPGFGAKQLAWMAHTGIMGAVIAPICFLGGPILM---RAAW----YTA 532
S G V+ + TP + + G + PI G +L+ +W T+
Sbjct: 741 STAGTVLVDVP-TPSW-VTETVTSGSVGFTTTIATPIGSTAGTVLVDIPTPSWVTETVTS 798
Query: 531 GVVGGLSTIA 502
G VG +TIA
Sbjct: 799 GSVGFTTTIA 808
>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2609
Score = 27.1 bits (57), Expect = 3.4
Identities = 20/65 (30%), Positives = 24/65 (36%), Gaps = 6/65 (9%)
Frame = -3
Query: 568 WPNPDACSLVHCWCSWWSEYNCSVCTI------WRVLEHACSTCYGSRSCVCCISGWDVS 407
W PD S VH SE CS+C WR AC CV + ++
Sbjct: 2536 WMLPDTTSNVHLEKDNTSEL-CSLCDSRFSLMEWRSQCRACGNSNVCSDCVSMLKDTNIK 2594
Query: 406 TTY*C 392
T Y C
Sbjct: 2595 TCYEC 2599
>SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regulator
protein Rif1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1400
Score = 27.1 bits (57), Expect = 3.4
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 4/56 (7%)
Frame = +3
Query: 423 EMQQTQLLDP*QVEHACSRTLQMVHTLQLYS--DHQLH--QQCTKLHASGLGHQGS 578
E ++ L+P V CSRT++ V TL L + DH + K H GL ++ S
Sbjct: 517 EAKELPKLNPVWVRANCSRTIEPVKTLLLLAKPDHTVKTTTPARKQHIRGLSYEQS 572
>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1522
Score = 27.1 bits (57), Expect = 3.4
Identities = 13/48 (27%), Positives = 24/48 (50%)
Frame = +2
Query: 680 PEPIIRPNVTIMDIHPFLATKFRSAGVLKTATALPAVSTKEPAMYPYV 823
P+P PNVT++ P A + + + T + +P T + + P+V
Sbjct: 115 PQPQSHPNVTVISASPARAIEQQPTILSSTDSNIPRPGTVKSSASPFV 162
>SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit
Par2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 627
Score = 26.2 bits (55), Expect = 6.0
Identities = 14/47 (29%), Positives = 21/47 (44%)
Frame = +2
Query: 308 IDCVSYNKNPPNTIKPPYKLSEYNPAPRALVGGRNIPARDAANTAPR 448
I S+ P +T PPY +S+ P + L G N+ + PR
Sbjct: 146 ISSASFLSVPQST--PPYLVSQPTPLNKFLAGAENVDIPHSLRPVPR 190
>SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 425
Score = 26.2 bits (55), Expect = 6.0
Identities = 11/39 (28%), Positives = 19/39 (48%), Gaps = 5/39 (12%)
Frame = -3
Query: 526 SWWSEYNCSVC-----TIWRVLEHACSTCYGSRSCVCCI 425
+W S C+ C T + L H C++C+ +C+ I
Sbjct: 341 TWISTIRCNDCNSRCDTKYHFLGHKCNSCHSYNTCISSI 379
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 25.8 bits (54), Expect = 7.9
Identities = 29/136 (21%), Positives = 41/136 (30%), Gaps = 1/136 (0%)
Frame = +2
Query: 380 PAPRALVGGR-NIPARDAANTAPRPIASGARMFKNSPDGAHTAIVLRPPTTPAVYQAARI 556
P PR+ G +P + + P P S + P + + V PP P
Sbjct: 341 PPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGRSA 400
Query: 557 RIGPPRKQIGAMTAPIIPVCAIHANCLAPNPGVYSIPLTTMPEPIIRPNVTIMDIHPFLA 736
PP + P +P P+ + P M P P I P L
Sbjct: 401 PALPPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLP 460
Query: 737 TKFRSAGVLKTATALP 784
+A L A P
Sbjct: 461 AGMPAAPPLPPAAPAP 476
>SPBC4C3.06 |||actin cytoskeletal protein Syp1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 818
Score = 25.8 bits (54), Expect = 7.9
Identities = 17/73 (23%), Positives = 30/73 (41%), Gaps = 1/73 (1%)
Frame = +2
Query: 509 VLRPPTTPAVYQAARIRIGPPRKQIGAMTAPIIPVCAIHANCLAPNPGVYSIPLTTMPEP 688
+L P + ++ P ++G A P+ H N A G L+ +PE
Sbjct: 571 LLHPSCSGHIFMKYTSDFNTPPPEMGVRVASEFPMSFTHLNDHAVKYGPSENTLSLIPEL 630
Query: 689 IIRP-NVTIMDIH 724
++ P VT ++H
Sbjct: 631 LLSPIKVTDFNLH 643
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,976,787
Number of Sequences: 5004
Number of extensions: 92041
Number of successful extensions: 298
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 264
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 293
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 428468660
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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