Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc11c06
(861 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0292 - 32886148-32886354,32886997-32887154,32887265-328873... 51 1e-06
03_06_0293 - 32889813-32890019,32890144-32890301,32891310-328914... 48 7e-06
07_01_0553 - 4119782-4119988,4120160-4120320,4120861-4121155 46 5e-05
03_05_1105 + 30438140-30438350,30438448-30438926 44 1e-04
07_01_0554 - 4121692-4121895,4121991-4122148,4123241-4123354,412... 43 4e-04
05_04_0254 - 19444409-19444621,19444724-19444887,19444974-194450... 41 0.001
11_06_0192 + 21128298-21128829,21129341-21129407,21131169-211312... 38 0.010
04_03_0630 - 18182681-18182931,18183397-18183463,18184899-181849... 34 0.17
08_01_0442 + 3922402-3922707,3922940-3923816,3925741-3926831 32 0.51
01_06_0046 + 25943183-25943590 32 0.51
05_03_0392 - 13432385-13432622,13432734-13433104 32 0.68
07_01_0077 + 566895-567127,567207-567331,571204-571340,571437-57... 31 1.6
06_03_0526 + 21771519-21771607,21771685-21771810,21771890-217720... 31 1.6
03_01_0092 - 731069-731434,731569-733080 31 1.6
12_02_0223 + 15868889-15869182 30 2.1
07_01_0312 + 2214050-2214556 30 2.1
03_04_0042 - 16743440-16743454,16743907-16744002,16744257-167444... 30 2.1
11_02_0082 - 8088169-8088284,8088613-8088697,8090344-8090442,809... 29 3.6
02_05_0607 - 30315982-30316215,30316688-30316831,30316902-303169... 29 3.6
01_06_1153 - 34942608-34942975,34943082-34943330,34943516-349436... 29 3.6
11_01_0059 - 444991-446908,447595-448218,448431-448861,450974-45... 29 4.8
10_08_0489 + 18269824-18270270,18271659-18271948,18272341-182725... 29 4.8
10_08_0173 + 15414628-15414890,15415001-15415074,15416322-154164... 29 4.8
04_04_0582 + 26369537-26369914,26371598-26371887,26371985-263721... 29 4.8
04_01_0490 - 6440176-6440448,6440785-6441074,6441156-6441304,644... 29 4.8
03_01_0417 - 3197956-3198438,3198550-3200001,3200116-3200277,320... 29 4.8
01_05_0710 + 24492337-24493053 29 4.8
11_06_0491 - 24298220-24299058,24299085-24299519,24299606-24299747 29 6.3
11_04_0014 - 12253341-12253358,12253520-12253729,12254388-122545... 29 6.3
09_04_0037 + 13992103-13992624,13993001-13993180,13993423-139936... 29 6.3
07_03_0561 + 19485218-19485242,19485323-19486467,19487354-194874... 29 6.3
07_01_0313 + 2216498-2216953 29 6.3
06_03_1508 - 30653967-30654245,30654342-30654631,30654773-306548... 29 6.3
06_03_0710 + 23792138-23792293,23792974-23793257,23794344-237944... 29 6.3
02_01_0491 + 3548602-3548901 29 6.3
11_01_0499 - 3834300-3835255,3836703-3837540,3837636-3837680 28 8.3
07_01_0979 - 8270980-8271654,8271984-8272088 28 8.3
07_01_0310 + 2209084-2209554 28 8.3
02_05_1147 - 34447519-34448042,34448126-34449092,34449458-344496... 28 8.3
01_06_1396 + 37014872-37015220,37015276-37015460,37015539-370158... 28 8.3
>03_06_0292 -
32886148-32886354,32886997-32887154,32887265-32887378,
32887660-32887924
Length = 247
Score = 51.2 bits (117), Expect = 1e-06
Identities = 38/133 (28%), Positives = 61/133 (45%), Gaps = 2/133 (1%)
Frame = -1
Query: 567 GPILMRAAWYTAGVVGGLSTIAV-CAPSGEFLNMRAPLAMGLGAV-FAASLAGMFLPPTX 394
G ++ +AA TA +V GL+ A G P V F ++ +FLP
Sbjct: 127 GTVIFQAAGMTAAIVIGLTCYTFWAAKRGYDFEFLGPFLFAATLVLFLYAIITIFLP--- 183
Query: 393 XXXXXXXXXXXXXXLIVFGGFLLYDTQSIIKRAEMHPPYGFKPYDPINSAISVYLDVLNI 214
++F GF++YDT ++IKR Y + Y + +AI++YLD++N+
Sbjct: 184 -MGRTGKLVYGCVAALIFSGFIIYDTDNLIKR------YTYDEY--VAAAITLYLDIINL 234
Query: 213 FMRIAMILSGAGG 175
FM + L A G
Sbjct: 235 FMALVTALQAADG 247
>03_06_0293 -
32889813-32890019,32890144-32890301,32891310-32891423,
32891531-32891777
Length = 241
Score = 48.4 bits (110), Expect = 7e-06
Identities = 41/141 (29%), Positives = 63/141 (44%), Gaps = 2/141 (1%)
Frame = -1
Query: 597 AVIAPICFLGGPILMRAAWYTAGVVGGLSTIAV-CAPSGEFLNMRAP-LAMGLGAVFAAS 424
AV + G ++ AA TA VV L+ A G N P L + + S
Sbjct: 111 AVGMTCAYTSGKVIFEAAALTAVVVISLTAYTFWAAKRGHDFNFLGPFLFSAVMVLILFS 170
Query: 423 LAGMFLPPTXXXXXXXXXXXXXXXLIVFGGFLLYDTQSIIKRAEMHPPYGFKPYDPINSA 244
L +F P +VF G+++YDT +IIKR Y + Y + +A
Sbjct: 171 LIQIFFP----LGKISEMIYGGLASLVFSGYIIYDTDNIIKR------YTYDEY--VWAA 218
Query: 243 ISVYLDVLNIFMRIAMILSGA 181
+S+YLDV+N+F+ + +L A
Sbjct: 219 VSLYLDVINLFLALLRVLRAA 239
>07_01_0553 - 4119782-4119988,4120160-4120320,4120861-4121155
Length = 220
Score = 45.6 bits (103), Expect = 5e-05
Identities = 39/139 (28%), Positives = 62/139 (44%), Gaps = 1/139 (0%)
Frame = -1
Query: 594 VIAPICFLGGPILMRAAWYTAGVVGGLSTIAV-CAPSGEFLNMRAPLAMGLGAVFAASLA 418
++AP+ + G ++ AA T G+V GL+ A G + P + V
Sbjct: 93 IVAPL--IAGIAIIEAASLTFGLVFGLTLYTFWAAKRGHDFSFLRPFLVAAFLVLVLYGL 150
Query: 417 GMFLPPTXXXXXXXXXXXXXXXLIVFGGFLLYDTQSIIKRAEMHPPYGFKPYDPINSAIS 238
L PT +VF GF++YDT ++IKR + + Y + +AIS
Sbjct: 151 IQMLVPTGKVATTVYGCVAA---LVFSGFIIYDTDNLIKR------HAYDEY--VTAAIS 199
Query: 237 VYLDVLNIFMRIAMILSGA 181
+YLD +NIF+ I L +
Sbjct: 200 LYLDTVNIFIAIFTALDAS 218
>03_05_1105 + 30438140-30438350,30438448-30438926
Length = 229
Score = 44.4 bits (100), Expect = 1e-04
Identities = 50/221 (22%), Positives = 95/221 (42%), Gaps = 4/221 (1%)
Frame = -1
Query: 852 PQYVKERIKTTYGYIAGSLVLT-AGSAVAVFRTPALLNLVARNGWMSIIVTLGLMIGSGM 676
PQ ++ Y ++ ++LT A ++V VF P L V+ ++ + L +++ +
Sbjct: 13 PQLRWAFVRKVYAILSIQMLLTIAVASVVVFVRPVALFFVSTPAGFALYIFL-IILPFIV 71
Query: 675 VVRGMEYTPGFGAKQLAWMAHTGIMGAVIAPIC-FLGGPILMRAAWYTAGVVGGLSTIAV 499
+ Y L T + + C F G +++ +A TA VV L+
Sbjct: 72 LCPLYYYYQRHPVNLLLLALFTAAISFAVGLTCAFTKGEVILESAILTAAVVVSLTAYTF 131
Query: 498 -CAPSGEFLNMRAP-LAMGLGAVFAASLAGMFLPPTXXXXXXXXXXXXXXXLIVFGGFLL 325
A G + P L + + +L +F P +VF G+++
Sbjct: 132 WAARRGHDFSFLGPFLFAAVMILMVFALIQVFFP----LGRVSLMIYGGLAALVFCGYIV 187
Query: 324 YDTQSIIKRAEMHPPYGFKPYDPINSAISVYLDVLNIFMRI 202
YDT ++IKR Y + Y + +A+++YLDV+N+F+ +
Sbjct: 188 YDTDNLIKR------YSYDEY--VWAAVALYLDVINLFLSL 220
>07_01_0554 -
4121692-4121895,4121991-4122148,4123241-4123354,
4123824-4124082
Length = 244
Score = 42.7 bits (96), Expect = 4e-04
Identities = 52/221 (23%), Positives = 92/221 (41%), Gaps = 4/221 (1%)
Frame = -1
Query: 831 IKTTYGYIAGSLVLTAGSAVAVFRTPALLNL-VARNGWMSIIVTLGLMIGSGMVVRGMEY 655
I+ Y ++ L+LTA A V + A+ + V+ + + + + L +I +V+ + Y
Sbjct: 36 IRKIYVILSMQLLLTAAVAAVVVKVRAISHFFVSSHAGLGLYIFL--IILPFIVLCPLYY 93
Query: 654 TPGFGAKQLAWMA--HTGIMGAVIAPICFLGGPILMRAAWYTAGVVGGLSTIAV-CAPSG 484
L + I AV F G +++ +A T VV L+ A G
Sbjct: 94 YHQKHPVNLILLGLFTVAISFAVGMTCAFTSGKVILESAILTTVVVFSLTAYTFWAAKRG 153
Query: 483 EFLNMRAPLAMGLGAVFAASLAGMFLPPTXXXXXXXXXXXXXXXLIVFGGFLLYDTQSII 304
+ P L A L F+ ++F G+++YDT +II
Sbjct: 154 RDFSFLGPF---LFASLIVLLVFAFIQILFPLGRISQMIYGGIASLIFSGYIVYDTDNII 210
Query: 303 KRAEMHPPYGFKPYDPINSAISVYLDVLNIFMRIAMILSGA 181
KR Y + Y + +A+S+YLDV+N+F+ + + A
Sbjct: 211 KR------YTYDQY--VWAAVSLYLDVINLFLSLMTLFRAA 243
>05_04_0254 -
19444409-19444621,19444724-19444887,19444974-19445087,
19446086-19446395
Length = 266
Score = 40.7 bits (91), Expect = 0.001
Identities = 48/215 (22%), Positives = 93/215 (43%), Gaps = 5/215 (2%)
Frame = -1
Query: 831 IKTTYGYIAGSLVLTAGSAVAVFRTPALLNLVARNGWMSIIVT-LGLMIGSGMVVRGMEY 655
++ YG +A L+LT + P L ++ + +++++ L ++ + ++
Sbjct: 56 VRKVYGILAAQLLLTTAVSALTVLHPTLNATLSSSPTLALVLAVLPFVLMVPLYHYQHKH 115
Query: 654 TPGFGAKQLAWMAHTGIMGAVIAPICFLGGPILMRAAWYTAGVVGGLSTIAVCAPS-GEF 478
F L + + +G A G I++ A T+ VV L+ A G+
Sbjct: 116 PHNFVYLGLFTLCLSFSIGVACANT---QGKIVLEALILTSAVVASLTAYTFWASKKGKE 172
Query: 477 LNMRAPL---AMGLGAVFAASLAGMFLPPTXXXXXXXXXXXXXXXLIVFGGFLLYDTQSI 307
P+ A+ L V + A +F P +VF GF++YDT+++
Sbjct: 173 FGYLGPILFSALVLLVVISFIQASVFFP----LGSGPVALFGGLGALVFSGFIIYDTENL 228
Query: 306 IKRAEMHPPYGFKPYDPINSAISVYLDVLNIFMRI 202
IKR + + Y I +++ +YLD+LN+F+ I
Sbjct: 229 IKR------HTYDDY--IWASVELYLDILNLFLYI 255
>11_06_0192 +
21128298-21128829,21129341-21129407,21131169-21131211,
21131301-21131367,21131613-21131770,21131863-21132057
Length = 353
Score = 37.9 bits (84), Expect = 0.010
Identities = 33/121 (27%), Positives = 53/121 (43%), Gaps = 1/121 (0%)
Frame = -1
Query: 567 GPILMRAAWYTAGVVGGLSTIAV-CAPSGEFLNMRAPLAMGLGAVFAASLAGMFLPPTXX 391
G ++++AA TA V GL+ A G P L A LA + +
Sbjct: 237 GKVVLQAAILTAVAVIGLTIFTFWAAHRGHDFTFMYPF---LAASLLVLLAYLIIQICFP 293
Query: 390 XXXXXXXXXXXXXLIVFGGFLLYDTQSIIKRAEMHPPYGFKPYDPINSAISVYLDVLNIF 211
++F F+++DT +IKR + + Y + +AIS+YLDV+N+F
Sbjct: 294 LGRAGMTIYGCLATVLFSAFIVFDTNQLIKR------HTYNEY--VIAAISLYLDVINLF 345
Query: 210 M 208
M
Sbjct: 346 M 346
>04_03_0630 -
18182681-18182931,18183397-18183463,18184899-18184964,
18185057-18185178,18185263-18185425,18186082-18186329,
18186418-18186751,18186857-18187000,18187079-18187144
Length = 486
Score = 33.9 bits (74), Expect = 0.17
Identities = 30/106 (28%), Positives = 44/106 (41%)
Frame = +2
Query: 332 NPPNTIKPPYKLSEYNPAPRALVGGRNIPARDAANTAPRPIASGARMFKNSPDGAHTAIV 511
NPPN + P + E P P + N A A T P P + + +P ++ +IV
Sbjct: 210 NPPNNTEGP--VVEETPIPEVIDEVPNNVAV-AMPTPPAPAPAPVPQ-EEAPKKSYASIV 265
Query: 512 LRPPTTPAVYQAARIRIGPPRKQIGAMTAPIIPVCAIHANCLAPNP 649
P A R PP+++ AP+ PV A +PNP
Sbjct: 266 KVMKEIPPQISAIPSRPAPPKQEKQVAPAPVAPVA--DAPTFSPNP 309
>08_01_0442 + 3922402-3922707,3922940-3923816,3925741-3926831
Length = 757
Score = 32.3 bits (70), Expect = 0.51
Identities = 13/24 (54%), Positives = 20/24 (83%)
Frame = -2
Query: 173 TGGSKRKITIGLEALCWPSLVLLD 102
+GG +++++IGLE L PSL+LLD
Sbjct: 280 SGGERKRVSIGLEMLVDPSLLLLD 303
>01_06_0046 + 25943183-25943590
Length = 135
Score = 32.3 bits (70), Expect = 0.51
Identities = 27/86 (31%), Positives = 35/86 (40%), Gaps = 1/86 (1%)
Frame = +2
Query: 179 PAPDKIMAILMNIFRTSR*TDMAELIGSYGLNP*GGCISARLIIDC-VSYNKNPPNTIKP 355
PAP ++AIL T+ + + G +P GG DC V Y PP + P
Sbjct: 5 PAPVLVLAILAVAASTAAAAAIEGEVKCGGCSPCGGA-------DCPVLYPSPPPPALPP 57
Query: 356 PYKLSEYNPAPRALVGGRNIPARDAA 433
P Y+P P A G P AA
Sbjct: 58 PPPYYYYSPPPPAYYPGSYCPPPPAA 83
>05_03_0392 - 13432385-13432622,13432734-13433104
Length = 202
Score = 31.9 bits (69), Expect = 0.68
Identities = 14/54 (25%), Positives = 23/54 (42%)
Frame = -1
Query: 762 RTPALLNLVARNGWMSIIVTLGLMIGSGMVVRGMEYTPGFGAKQLAWMAHTGIM 601
R P+ R+ ++V G ++G G V G EY G + W H ++
Sbjct: 5 RNPSRHRRPRRSDLRDVVVDRGEVVGGGGKVEGREYVGGLAGHLVVWAPHIALL 58
>07_01_0077 +
566895-567127,567207-567331,571204-571340,571437-571542,
571635-571885,572018-572128,572209-572320,572626-572716,
573168-573507,573678-573900,573946-574204,574274-574481,
574572-574622,574712-574870,574956-575120,575322-575399,
575732-576031,576107-576259,576871-576918,577019-577188,
577738-577852,578462-578623,578789-578893,578969-579199,
579277-579410,579484-579738,579822-580110,580214-580306,
580395-580520,580646-580897
Length = 1693
Score = 30.7 bits (66), Expect = 1.6
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = -3
Query: 484 RVLEHACSTCYGSRSCVCCISGWDVSTTY*CSWC 383
++L++ C C G R CV +S ++ Y C C
Sbjct: 563 KILKNKCCICLGGRDCVGAVSQENLQCDYACPLC 596
>06_03_0526 +
21771519-21771607,21771685-21771810,21771890-21772010,
21772123-21772851,21772954-21773349,21774594-21774665,
21774741-21774803,21775236-21775337
Length = 565
Score = 30.7 bits (66), Expect = 1.6
Identities = 17/61 (27%), Positives = 28/61 (45%)
Frame = +2
Query: 296 ARLIIDCVSYNKNPPNTIKPPYKLSEYNPAPRALVGGRNIPARDAANTAPRPIASGARMF 475
A+ ++ +S PP +PP + + + +PR + A + PRP A G RM
Sbjct: 220 AQAMLAVISTPAPPPPLWRPPRRRARSSSSPRRATAFKAYNAALSPRARPRPGAPGQRMI 279
Query: 476 K 478
K
Sbjct: 280 K 280
>03_01_0092 - 731069-731434,731569-733080
Length = 625
Score = 30.7 bits (66), Expect = 1.6
Identities = 15/45 (33%), Positives = 20/45 (44%)
Frame = +2
Query: 494 AHTAIVLRPPTTPAVYQAARIRIGPPRKQIGAMTAPIIPVCAIHA 628
A + + PP TPA A R+ PP + AP PV + A
Sbjct: 62 APAPVAVAPPATPAGLSALRVHASPPPPPVKQHAAPPPPVMDVAA 106
>12_02_0223 + 15868889-15869182
Length = 97
Score = 30.3 bits (65), Expect = 2.1
Identities = 9/13 (69%), Positives = 12/13 (92%)
Frame = -3
Query: 238 CLSGCSEYIHENC 200
CL+GCS+Y H+NC
Sbjct: 84 CLTGCSDYCHKNC 96
>07_01_0312 + 2214050-2214556
Length = 168
Score = 30.3 bits (65), Expect = 2.1
Identities = 30/101 (29%), Positives = 36/101 (35%), Gaps = 1/101 (0%)
Frame = +2
Query: 413 IPARDAANTAPRPIASGARMFKNSPDGAHTAIVLRP-PTTPAVYQAARIRIGPPRKQIGA 589
IPA AA P P P A + L P P PAV + P A
Sbjct: 56 IPAVPAATLPPMPAVPTVPNAALPPMPAVPKVALPPMPAVPAVPTVPAVPAVP-----AA 110
Query: 590 MTAPIIPVCAIHANCLAPNPGVYSIPLTTMPEPIIRPNVTI 712
P+ V A+ L P P V + L MP P VT+
Sbjct: 111 SLPPMPAVPAVPNAVLPPMPAVPKVTLPPMPSMPAVPKVTL 151
>03_04_0042 -
16743440-16743454,16743907-16744002,16744257-16744475,
16744830-16744910,16745092-16745187,16745981-16746045,
16746131-16746217,16746522-16746720
Length = 285
Score = 30.3 bits (65), Expect = 2.1
Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = +2
Query: 380 PAPRALVGGRNIPARDAANTAPRP-IASGARMFKNSPDGAHTAIVLR 517
P P AL+ GR+ R P P +AS AR+ + A TA+V+R
Sbjct: 2 PPPTALLPGRSAAPRPPPPPPPPPQLASAARLSRRPLFNAATAVVVR 48
>11_02_0082 -
8088169-8088284,8088613-8088697,8090344-8090442,
8090537-8090609,8090694-8090804,8090901-8091074,
8091184-8091574,8091662-8092283,8092379-8093251,
8093294-8093800
Length = 1016
Score = 29.5 bits (63), Expect = 3.6
Identities = 22/79 (27%), Positives = 30/79 (37%)
Frame = +2
Query: 413 IPARDAANTAPRPIASGARMFKNSPDGAHTAIVLRPPTTPAVYQAARIRIGPPRKQIGAM 592
+P R AA+ AP P A + +P H + P PA + PPR
Sbjct: 529 LPGRQAASRAPSPPAPPSPPQDPAPSPPHDPLAPSLPQAPAATPPQDPALTPPRAP--TP 586
Query: 593 TAPIIPVCAIHANCLAPNP 649
T P P+ A + P P
Sbjct: 587 TPPQAPLPAPSKSRAPPTP 605
>02_05_0607 -
30315982-30316215,30316688-30316831,30316902-30316989,
30317829-30317934,30318398-30318552,30318630-30318699,
30319940-30320106,30320827-30320894,30322764-30322867,
30322937-30323107,30323113-30323238,30323496-30323663,
30323725-30323908,30324139-30324534
Length = 726
Score = 29.5 bits (63), Expect = 3.6
Identities = 15/44 (34%), Positives = 22/44 (50%)
Frame = -1
Query: 552 RAAWYTAGVVGGLSTIAVCAPSGEFLNMRAPLAMGLGAVFAASL 421
R + +T G+ GG IAV SG R+PL++ + A L
Sbjct: 410 RVSKWTLGLQGGGEQIAVIRASGSITRTRSPLSVPSSGIIAEQL 453
>01_06_1153 -
34942608-34942975,34943082-34943330,34943516-34943625,
34944698-34944771,34945237-34945306,34945848-34945947,
34946045-34946120,34946572-34946646,34947067-34947156,
34947238-34947354,34947457-34947567,34947649-34947788,
34947962-34948043,34948224-34948303,34948938-34949046,
34949295-34949417,34949972-34950044,34950338-34950489,
34951029-34951127,34952258-34952383
Length = 807
Score = 29.5 bits (63), Expect = 3.6
Identities = 21/72 (29%), Positives = 29/72 (40%), Gaps = 3/72 (4%)
Frame = +2
Query: 359 YKLSEYNPAPRALVGGRNIPARDAANTAPRPIASGARMFKNSPDG---AHTAIVLRPPTT 529
+ LS NP R LV GRN R P ++ PDG HT ++ P T
Sbjct: 51 FSLSGSNPQDRHLVAGRNGVKRLRTVRHPNILSFLHSTEAEVPDGPAMKHTIYIVTEPVT 110
Query: 530 PAVYQAARIRIG 565
P + + +G
Sbjct: 111 PLSEKLKELNLG 122
>11_01_0059 -
444991-446908,447595-448218,448431-448861,450974-452293
Length = 1430
Score = 29.1 bits (62), Expect = 4.8
Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 4/55 (7%)
Frame = +2
Query: 518 PPTTPAVYQAARIRI----GPPRKQIGAMTAPIIPVCAIHANCLAPNPGVYSIPL 670
PP T + A +R+ G + A+T+ + + A+ +CL PNP +IP+
Sbjct: 806 PPLTVKLLHARLLRLDLLAGLSSLLLRALTSSALHLHALRVHCLLPNPSHLTIPI 860
>10_08_0489 +
18269824-18270270,18271659-18271948,18272341-18272512,
18272608-18272730,18272832-18272960,18273061-18273255,
18273384-18273470,18273563-18273835,18274047-18274154,
18274769-18275116
Length = 723
Score = 29.1 bits (62), Expect = 4.8
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = -2
Query: 173 TGGSKRKITIGLEALCWPSLVLLD 102
+GG KR+++I LE L P L+ LD
Sbjct: 215 SGGEKRRVSIALEILMRPRLLFLD 238
>10_08_0173 +
15414628-15414890,15415001-15415074,15416322-15416401,
15417186-15417231,15417334-15417368,15417751-15417771,
15418418-15419133,15419292-15419324,15419517-15419813,
15420213-15420659,15420738-15420886,15421408-15421697,
15421774-15421898,15422006-15422156
Length = 908
Score = 29.1 bits (62), Expect = 4.8
Identities = 9/24 (37%), Positives = 19/24 (79%)
Frame = -2
Query: 173 TGGSKRKITIGLEALCWPSLVLLD 102
+GG ++++ +G+E + PSL++LD
Sbjct: 463 SGGQRKRVNVGIEMVMEPSLLILD 486
>04_04_0582 +
26369537-26369914,26371598-26371887,26371985-26372156,
26372271-26372393,26372499-26372627,26372785-26372979,
26373128-26373214,26373296-26373568,26374166-26374273,
26374363-26374686
Length = 692
Score = 29.1 bits (62), Expect = 4.8
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = -2
Query: 173 TGGSKRKITIGLEALCWPSLVLLD 102
+GG KR+++I LE L P L+ LD
Sbjct: 192 SGGEKRRVSIALELLMRPRLLFLD 215
>04_01_0490 -
6440176-6440448,6440785-6441074,6441156-6441304,
6441432-6441890,6441973-6442269,6442604-6443502,
6443793-6443827,6443984-6444078,6444184-6444247,
6446099-6446175,6446330-6446514
Length = 940
Score = 29.1 bits (62), Expect = 4.8
Identities = 9/24 (37%), Positives = 19/24 (79%)
Frame = -2
Query: 173 TGGSKRKITIGLEALCWPSLVLLD 102
+GG ++++ +G+E + PSL++LD
Sbjct: 492 SGGQRKRVNVGIEMVMEPSLLILD 515
>03_01_0417 -
3197956-3198438,3198550-3200001,3200116-3200277,
3200351-3201133
Length = 959
Score = 29.1 bits (62), Expect = 4.8
Identities = 17/80 (21%), Positives = 36/80 (45%), Gaps = 1/80 (1%)
Frame = +2
Query: 329 KNPPNTIKPPYKLSEYNPAPRALVGGRNIPARDAANTAPRPIAS-GARMFKNSPDGAHTA 505
++ P + P+ + P LVG + NT+ P+ R+F ++P+ ++
Sbjct: 39 EDAPVVVTVPFPFIDGKPKS-VLVGETSADTISIENTSSEPVNLWSVRIFSSNPEDSYVL 97
Query: 506 IVLRPPTTPAVYQAARIRIG 565
+++PP +A R +G
Sbjct: 98 SMMKPPLNDTDEEAKRNFLG 117
>01_05_0710 + 24492337-24493053
Length = 238
Score = 29.1 bits (62), Expect = 4.8
Identities = 33/115 (28%), Positives = 44/115 (38%), Gaps = 6/115 (5%)
Frame = +2
Query: 281 GGCISARLIIDCVSYNKNPPNTIKPPYKLSEYNP------APRALVGGRNIPARDAANTA 442
GG I R++ + P + PPY LS + PR LV N+PA TA
Sbjct: 18 GGAIPHRVLRGACT---TAPASRPPPYPLSPSDLDAVSALLPR-LVSAGNVPAAGRLLTA 73
Query: 443 PRPIASGARMFKNSPDGAHTAIVLRPPTTPAVYQAARIRIGPPRKQIGAMTAPII 607
+ SP AH A + P TPA IR P R + P++
Sbjct: 74 ALLLPGSTERLPFSPLAAHLASM--PTLTPAFALLTAIRHHPLRPSPLPLATPLL 126
>11_06_0491 - 24298220-24299058,24299085-24299519,24299606-24299747
Length = 471
Score = 28.7 bits (61), Expect = 6.3
Identities = 19/48 (39%), Positives = 27/48 (56%)
Frame = -1
Query: 549 AAWYTAGVVGGLSTIAVCAPSGEFLNMRAPLAMGLGAVFAASLAGMFL 406
AA + A V+G T+ + + FL M LAM LGA +AA +A F+
Sbjct: 87 AAGWAADVLGRRGTLVL---ANAFL-MAGALAMSLGATYAALMAARFV 130
>11_04_0014 -
12253341-12253358,12253520-12253729,12254388-12254523,
12254631-12254752,12254789-12254842,12254872-12255161,
12255737-12255948,12256008-12256475,12256560-12256856,
12257467-12258329,12258417-12258490,12258616-12258650,
12259024-12259087,12259452-12259733,12259870-12259946,
12260045-12260325
Length = 1160
Score = 28.7 bits (61), Expect = 6.3
Identities = 9/24 (37%), Positives = 19/24 (79%)
Frame = -2
Query: 173 TGGSKRKITIGLEALCWPSLVLLD 102
+GG ++++ +GLE + PS+++LD
Sbjct: 599 SGGQRKRVNVGLEMVMEPSVLILD 622
>09_04_0037 +
13992103-13992624,13993001-13993180,13993423-13993691,
13994120-13995773
Length = 874
Score = 28.7 bits (61), Expect = 6.3
Identities = 10/24 (41%), Positives = 19/24 (79%)
Frame = -2
Query: 173 TGGSKRKITIGLEALCWPSLVLLD 102
+GG +R+++IG++ + PSL+ LD
Sbjct: 250 SGGERRRVSIGIDIIHKPSLLFLD 273
>07_03_0561 +
19485218-19485242,19485323-19486467,19487354-19487476,
19487553-19487626,19487886-19487946,19488285-19488370,
19488795-19488864,19489026-19489122,19489342-19489481,
19490225-19490308,19490313-19490346,19491833-19491951
Length = 685
Score = 28.7 bits (61), Expect = 6.3
Identities = 16/41 (39%), Positives = 22/41 (53%)
Frame = +2
Query: 500 TAIVLRPPTTPAVYQAARIRIGPPRKQIGAMTAPIIPVCAI 622
TA LRPP P +AA G P++ +G T + PV A+
Sbjct: 200 TARRLRPPAPPPRRRAASSSQGQPKRWVGC-TLVVCPVVAV 239
>07_01_0313 + 2216498-2216953
Length = 151
Score = 28.7 bits (61), Expect = 6.3
Identities = 27/85 (31%), Positives = 38/85 (44%), Gaps = 4/85 (4%)
Frame = +2
Query: 581 IGAMTAPIIPVCAIHANCLAPNPGVYSIPLTTMPEPIIRPNVTIMDIHPFLA--TKFRSA 754
+ A+T P IP A+ L P P + ++P TMP P V + + P A T +
Sbjct: 58 VPAVTLPPIP--AVPKVTLPPMPAIPTVPAVTMPPMPAVPAVPAVTLPPMPAVPTVPPNT 115
Query: 755 GVLKTAT--ALPAVSTKEPAMYPYV 823
V+ A ALP V+ A P V
Sbjct: 116 VVVPAAVVPALPKVALPPMAAVPNV 140
>06_03_1508 -
30653967-30654245,30654342-30654631,30654773-30654841,
30654854-30654921,30655016-30655492,30655578-30655874,
30655974-30656824,30656917-30656990,30657270-30657292,
30657709-30657772,30658098-30658370,30658511-30658587,
30658686-30658912
Length = 1022
Score = 28.7 bits (61), Expect = 6.3
Identities = 9/24 (37%), Positives = 19/24 (79%)
Frame = -2
Query: 173 TGGSKRKITIGLEALCWPSLVLLD 102
+GG ++++ +GLE + PS+++LD
Sbjct: 570 SGGQRKRVNVGLEMVMEPSVLILD 593
>06_03_0710 +
23792138-23792293,23792974-23793257,23794344-23794499,
23795318-23795804,23795864-23796181,23796773-23797165,
23797752-23798021
Length = 687
Score = 28.7 bits (61), Expect = 6.3
Identities = 12/24 (50%), Positives = 18/24 (75%)
Frame = -2
Query: 173 TGGSKRKITIGLEALCWPSLVLLD 102
+GG +++ +IG E L PSL+LLD
Sbjct: 214 SGGERKRTSIGYEILVDPSLLLLD 237
>02_01_0491 + 3548602-3548901
Length = 99
Score = 28.7 bits (61), Expect = 6.3
Identities = 23/67 (34%), Positives = 32/67 (47%)
Frame = -1
Query: 690 IGSGMVVRGMEYTPGFGAKQLAWMAHTGIMGAVIAPICFLGGPILMRAAWYTAGVVGGLS 511
+G G T G GA L W A ++GAV P + +L+ A+ AGV L
Sbjct: 16 LGGGAPFLFRSRTIGVGAIFLMWGASAIVLGAVPEPAIPI-AHMLLSFAFLMAGV--ALL 72
Query: 510 TIAVCAP 490
T++V AP
Sbjct: 73 TLSVAAP 79
>11_01_0499 - 3834300-3835255,3836703-3837540,3837636-3837680
Length = 612
Score = 28.3 bits (60), Expect = 8.3
Identities = 11/24 (45%), Positives = 19/24 (79%)
Frame = -2
Query: 173 TGGSKRKITIGLEALCWPSLVLLD 102
+GG +++++IG E L PSL++LD
Sbjct: 182 SGGERKRVSIGHELLVNPSLLVLD 205
>07_01_0979 - 8270980-8271654,8271984-8272088
Length = 259
Score = 28.3 bits (60), Expect = 8.3
Identities = 8/14 (57%), Positives = 9/14 (64%)
Frame = -3
Query: 598 SCHCSNLLPWWPNP 557
SCHC + WW NP
Sbjct: 245 SCHCQRVKHWWRNP 258
>07_01_0310 + 2209084-2209554
Length = 156
Score = 28.3 bits (60), Expect = 8.3
Identities = 27/99 (27%), Positives = 41/99 (41%), Gaps = 2/99 (2%)
Frame = +2
Query: 503 AIVLRP-PTTPAVYQAARIRIGPPRKQIGAMTAPIIP-VCAIHANCLAPNPGVYSIPLTT 676
A L P P P V AA + P ++ P +P V + A L P P V ++P T
Sbjct: 41 AATLPPIPAVPTVPNAALPPM-PAVPKVALPPMPAVPAVPTVPAVALPPMPAVPAVPTAT 99
Query: 677 MPEPIIRPNVTIMDIHPFLATKFRSAGVLKTATALPAVS 793
+P P V + P A + + + A+P V+
Sbjct: 100 LPPMPAVPAVPNAVLPPIPAVPKVTLPPMPSIPAVPKVT 138
Score = 28.3 bits (60), Expect = 8.3
Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
Frame = +2
Query: 503 AIVLRP-PTTPAVYQAARIRIGPPRKQIGAMTAPIIP-VCAIHANCLAPNPGVYSIPLTT 676
A+ L P P PAV A PP + A+ ++P + A+ L P P + ++P T
Sbjct: 83 AVALPPMPAVPAVPTATL----PPMPAVPAVPNAVLPPIPAVPKVTLPPMPSIPAVPKVT 138
Query: 677 MP 682
+P
Sbjct: 139 LP 140
>02_05_1147 -
34447519-34448042,34448126-34449092,34449458-34449657,
34449867-34450051,34450130-34450228,34450316-34450357,
34450516-34450860,34450956-34451101,34451213-34451296,
34451424-34451502,34451596-34451675,34451824-34451875,
34451992-34452026
Length = 945
Score = 28.3 bits (60), Expect = 8.3
Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 3/66 (4%)
Frame = +2
Query: 518 PPTTPAVYQAARIRIGPPRKQIGAMTAPIIPVCAIHA---NCLAPNPGVYSIPLTTMPEP 688
PPT P V PR + + P+ P A+++ + P+P + S+ L ++P+P
Sbjct: 363 PPTHPEVNGFDEF---DPRGSVPDTSPPVNPSQAVNSLEMDLFGPDP-INSLALVSVPQP 418
Query: 689 IIRPNV 706
PNV
Sbjct: 419 TASPNV 424
>01_06_1396 +
37014872-37015220,37015276-37015460,37015539-37015892,
37016250-37016525
Length = 387
Score = 28.3 bits (60), Expect = 8.3
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = +2
Query: 341 NTIKPPYKLSEYNPAPRALVGGRNIPARDAANTAPRPIASG 463
+ I+P L +++ P L G N+ A+D +TA ASG
Sbjct: 291 DAIQPQLALDKHHKIPDELSGEANMAAQDGNHTATAAAASG 331
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,584,083
Number of Sequences: 37544
Number of extensions: 650544
Number of successful extensions: 2123
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 1990
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2108
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2409218220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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