Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc11c06
(861 letters)
Database: mosquito
2352 sequences; 563,979 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AJ439353-4|CAD27926.1| 338|Anopheles gambiae putative hox prote... 29 0.14
AJ271193-1|CAB66001.1| 1623|Anopheles gambiae laminin gamma 1 pr... 26 1.3
AY341174-1|AAR13738.1| 280|Anopheles gambiae fibrinogen protein. 25 2.2
AY341173-1|AAR13737.1| 280|Anopheles gambiae fibrinogen protein. 25 2.2
AY341172-1|AAR13736.1| 280|Anopheles gambiae fibrinogen protein. 25 2.2
AY341171-1|AAR13735.1| 280|Anopheles gambiae fibrinogen protein. 25 2.2
AY341170-1|AAR13734.1| 280|Anopheles gambiae fibrinogen protein. 25 2.2
AY341169-1|AAR13733.1| 280|Anopheles gambiae fibrinogen protein. 25 2.2
AY341168-1|AAR13732.1| 280|Anopheles gambiae fibrinogen protein. 25 2.2
DQ974164-1|ABJ52804.1| 410|Anopheles gambiae serpin 4C protein. 25 3.0
M93689-2|AAA29367.1| 975|Anopheles gambiae protein ( Anopheles ... 24 5.2
AJ010299-1|CAA09070.1| 722|Anopheles gambiae stat protein. 23 9.0
>AJ439353-4|CAD27926.1| 338|Anopheles gambiae putative hox protein
protein.
Length = 338
Score = 29.5 bits (63), Expect = 0.14
Identities = 23/66 (34%), Positives = 26/66 (39%)
Frame = +2
Query: 338 PNTIKPPYKLSEYNPAPRALVGGRNIPARDAANTAPRPIASGARMFKNSPDGAHTAIVLR 517
P + PP KLS R L G P R A A RP+ S N A A
Sbjct: 110 PTDVSPP-KLSPKEDYYRKLYRGEKTPERYAPYLAVRPVES-LTSGSNVAAAAAGASAST 167
Query: 518 PPTTPA 535
PPT P+
Sbjct: 168 PPTIPS 173
>AJ271193-1|CAB66001.1| 1623|Anopheles gambiae laminin gamma 1
precursor protein.
Length = 1623
Score = 26.2 bits (55), Expect = 1.3
Identities = 9/26 (34%), Positives = 13/26 (50%)
Frame = +1
Query: 691 HQTQCDNNGHPSISCYQI*KCGCSEN 768
H CD +G C Q +C C++N
Sbjct: 985 HACDCDPSGSKGSQCNQYGQCPCNDN 1010
>AY341174-1|AAR13738.1| 280|Anopheles gambiae fibrinogen protein.
Length = 280
Score = 25.4 bits (53), Expect = 2.2
Identities = 9/18 (50%), Positives = 14/18 (77%)
Frame = -3
Query: 631 ISMDGAHWYYGSCHCSNL 578
++ +GA W+Y +CH SNL
Sbjct: 262 VTCEGA-WWYNNCHHSNL 278
>AY341173-1|AAR13737.1| 280|Anopheles gambiae fibrinogen protein.
Length = 280
Score = 25.4 bits (53), Expect = 2.2
Identities = 9/18 (50%), Positives = 14/18 (77%)
Frame = -3
Query: 631 ISMDGAHWYYGSCHCSNL 578
++ +GA W+Y +CH SNL
Sbjct: 262 VTCEGA-WWYNNCHHSNL 278
>AY341172-1|AAR13736.1| 280|Anopheles gambiae fibrinogen protein.
Length = 280
Score = 25.4 bits (53), Expect = 2.2
Identities = 9/18 (50%), Positives = 14/18 (77%)
Frame = -3
Query: 631 ISMDGAHWYYGSCHCSNL 578
++ +GA W+Y +CH SNL
Sbjct: 262 VTCEGA-WWYNNCHHSNL 278
>AY341171-1|AAR13735.1| 280|Anopheles gambiae fibrinogen protein.
Length = 280
Score = 25.4 bits (53), Expect = 2.2
Identities = 9/18 (50%), Positives = 14/18 (77%)
Frame = -3
Query: 631 ISMDGAHWYYGSCHCSNL 578
++ +GA W+Y +CH SNL
Sbjct: 262 VTCEGA-WWYNNCHHSNL 278
>AY341170-1|AAR13734.1| 280|Anopheles gambiae fibrinogen protein.
Length = 280
Score = 25.4 bits (53), Expect = 2.2
Identities = 9/18 (50%), Positives = 14/18 (77%)
Frame = -3
Query: 631 ISMDGAHWYYGSCHCSNL 578
++ +GA W+Y +CH SNL
Sbjct: 262 VTCEGA-WWYNNCHHSNL 278
>AY341169-1|AAR13733.1| 280|Anopheles gambiae fibrinogen protein.
Length = 280
Score = 25.4 bits (53), Expect = 2.2
Identities = 9/18 (50%), Positives = 14/18 (77%)
Frame = -3
Query: 631 ISMDGAHWYYGSCHCSNL 578
++ +GA W+Y +CH SNL
Sbjct: 262 VTCEGA-WWYNNCHHSNL 278
>AY341168-1|AAR13732.1| 280|Anopheles gambiae fibrinogen protein.
Length = 280
Score = 25.4 bits (53), Expect = 2.2
Identities = 9/18 (50%), Positives = 14/18 (77%)
Frame = -3
Query: 631 ISMDGAHWYYGSCHCSNL 578
++ +GA W+Y +CH SNL
Sbjct: 262 VTCEGA-WWYNNCHHSNL 278
>DQ974164-1|ABJ52804.1| 410|Anopheles gambiae serpin 4C protein.
Length = 410
Score = 25.0 bits (52), Expect = 3.0
Identities = 7/13 (53%), Positives = 10/13 (76%)
Frame = -3
Query: 454 YGSRSCVCCISGW 416
YG ++CVCCI +
Sbjct: 316 YGGKTCVCCIESF 328
>M93689-2|AAA29367.1| 975|Anopheles gambiae protein ( Anopheles
gambiae T1 retroposon. ).
Length = 975
Score = 24.2 bits (50), Expect = 5.2
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = -1
Query: 285 PPYGFKPYDPINSAISVYLDVLNI 214
P + P+ +NS+ S +LDVLN+
Sbjct: 176 PMRHYVPHISLNSSSSCFLDVLNL 199
>AJ010299-1|CAA09070.1| 722|Anopheles gambiae stat protein.
Length = 722
Score = 23.4 bits (48), Expect = 9.0
Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
Frame = +3
Query: 483 LQMVHTLQLYS---DHQLHQQCTKLHASGLGHQGSKLEQ*Q 596
LQ +H ++ + HQL Q+C + H L +Q S ++ Q
Sbjct: 140 LQQLHVMERNNWKETHQLIQECEQDHVQRLSNQRSHYKRIQ 180
Database: mosquito
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 563,979
Number of sequences in database: 2352
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,028,838
Number of Sequences: 2352
Number of extensions: 24608
Number of successful extensions: 44
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 44
length of database: 563,979
effective HSP length: 64
effective length of database: 413,451
effective search space used: 91786122
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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