Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc11c06
(861 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U88168-4|AAC24402.1| 342|Caenorhabditis elegans Hypothetical pr... 250 7e-67
U28740-4|AAA68319.2| 276|Caenorhabditis elegans Temporarily ass... 37 0.016
AL031635-4|CAA21043.2| 269|Caenorhabditis elegans Hypothetical ... 31 0.80
U41028-4|AAA82357.1| 455|Caenorhabditis elegans Hypothetical pr... 31 1.1
Z46791-5|CAA86755.2| 948|Caenorhabditis elegans Hypothetical pr... 30 2.4
Z70753-11|CAA94766.1| 244|Caenorhabditis elegans Hypothetical p... 29 3.2
Z70286-6|CAA94293.1| 3672|Caenorhabditis elegans Hypothetical pr... 29 3.2
Z70286-5|CAB61016.1| 3704|Caenorhabditis elegans Hypothetical pr... 29 3.2
AF036687-2|AAB88311.2| 2224|Caenorhabditis elegans Hypothetical ... 29 3.2
AB016806-1|BAA32347.1| 3704|Caenorhabditis elegans laminin alpha... 29 3.2
AB001074-1|BAA19229.1| 3704|Caenorhabditis elegans laminin alpha... 29 3.2
Z83127-3|CAB05629.2| 291|Caenorhabditis elegans Hypothetical pr... 29 4.3
U39852-1|AAK39256.2| 2314|Caenorhabditis elegans Hypothetical pr... 29 4.3
U97191-1|AAB52432.1| 805|Caenorhabditis elegans Nuclear pore co... 28 7.4
AJ010646-1|CAA09303.1| 1237|Caenorhabditis elegans calcium ATPas... 28 9.8
AC025724-13|AAK68551.1| 1234|Caenorhabditis elegans Membrane cal... 28 9.8
AC025724-12|AAK68550.1| 1160|Caenorhabditis elegans Membrane cal... 28 9.8
AC025724-11|AAM97979.1| 1137|Caenorhabditis elegans Membrane cal... 28 9.8
>U88168-4|AAC24402.1| 342|Caenorhabditis elegans Hypothetical
protein K11H12.8a protein.
Length = 342
Score = 250 bits (613), Expect = 7e-67
Identities = 124/238 (52%), Positives = 156/238 (65%), Gaps = 8/238 (3%)
Frame = -1
Query: 852 PQYVKERIKTTYGYIAGSLVLTAGSAVAVFRTPALLNLVARNGWMSIIVTLGLMIGSGMV 673
P YV+ERI TTY Y+AGSL LTA S VA R+ A++ L A G MS+ T+ MI SGM+
Sbjct: 106 PSYVRERISTTYAYLAGSLALTAVSGVAASRSAAIMRLTAGGGMMSLFGTMAAMIASGML 165
Query: 672 VRGMEYTPGFGAKQLAWMAHTGIMGAVIAPICFLGGPILMRAAWYTAGVVGGLSTIAVCA 493
R ++Y AK LAW H G++GAV AP+CF+ GP+L RAAWYTAG+VGGLS A+ A
Sbjct: 166 ARSIDYESTV-AKHLAWALHCGVLGAVFAPLCFMAGPVLTRAAWYTAGIVGGLSATAITA 224
Query: 492 PSGEFLNMRAPLAMGLGAVFAASLAGMFLPPTXXXXXXXXXXXXXXXLIVFGGFLLYDTQ 313
PS +FL M PLAMG G VF A++ FLPP LI+F FLLYDTQ
Sbjct: 225 PSEKFLMMSGPLAMGFGVVFVANIGAFFLPPGSALGASLASIVVYGGLILFSAFLLYDTQ 284
Query: 312 SIIKRAEMHPP----YG----FKPYDPINSAISVYLDVLNIFMRIAMILSGAGGNRRK 163
++K+AE HP YG + +DPIN+ +S+Y+DVLNIFMR+ MI+ G GNRRK
Sbjct: 285 RLVKKAENHPHSSQLYGSDMQIRSFDPINAQMSIYMDVLNIFMRLVMIMGGMNGNRRK 342
>U28740-4|AAA68319.2| 276|Caenorhabditis elegans Temporarily
assigned gene nameprotein 132 protein.
Length = 276
Score = 37.1 bits (82), Expect = 0.016
Identities = 15/33 (45%), Positives = 24/33 (72%)
Frame = -1
Query: 279 YGFKPYDPINSAISVYLDVLNIFMRIAMILSGA 181
Y F P D I + +S+Y+D+LN+F+RI I++ A
Sbjct: 242 YRFSPEDYICACVSLYMDILNLFIRILQIVAEA 274
>AL031635-4|CAA21043.2| 269|Caenorhabditis elegans Hypothetical
protein Y47D3B.6 protein.
Length = 269
Score = 31.5 bits (68), Expect = 0.80
Identities = 16/47 (34%), Positives = 20/47 (42%)
Frame = +2
Query: 314 CVSYNKNPPNTIKPPYKLSEYNPAPRALVGGRNIPARDAANTAPRPI 454
C+ PP + PP L Y PAP +PA A AP P+
Sbjct: 44 CIPTAAAPPMMMAPPAPLPAYAPAPLPAYAPAPLPAPVFAAPAPAPV 90
>U41028-4|AAA82357.1| 455|Caenorhabditis elegans Hypothetical
protein C25G6.5 protein.
Length = 455
Score = 31.1 bits (67), Expect = 1.1
Identities = 12/22 (54%), Positives = 16/22 (72%), Gaps = 2/22 (9%)
Frame = +2
Query: 44 IFHILNSF--TNMFGITTFSVC 103
+FHI N+F N F +TTFS+C
Sbjct: 289 VFHIFNTFELVNSFSVTTFSIC 310
>Z46791-5|CAA86755.2| 948|Caenorhabditis elegans Hypothetical
protein C09G5.6 protein.
Length = 948
Score = 29.9 bits (64), Expect = 2.4
Identities = 29/99 (29%), Positives = 39/99 (39%), Gaps = 3/99 (3%)
Frame = +2
Query: 323 YNKNPP-NTIKPPYKLSEYNPAPRALVGGRNIPARDAANTAP-RPIASGARMFKNSPDGA 496
YN PP T P YNP P+ + P N AP +P S P G
Sbjct: 196 YNPQPPPKTGYPTNPRVPYNP-PQPNYTRQ--PTYPEDNRAPYKPTRSPNTPPPRQPSGG 252
Query: 497 HTAIVLRPPTTPAVYQAAR-IRIGPPRKQIGAMTAPIIP 610
+ + PP++P +Y R GP + TAP +P
Sbjct: 253 YDSDGQTPPSSPRIYNTRRPNNHGPGYPEDQVPTAPPVP 291
>Z70753-11|CAA94766.1| 244|Caenorhabditis elegans Hypothetical
protein F40F9.2 protein.
Length = 244
Score = 29.5 bits (63), Expect = 3.2
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = -1
Query: 279 YGFKPYDPINSAISVYLDVLNIFMRIAMI 193
Y P D I +A+ ++LD+LNIF+ + I
Sbjct: 211 YELSPEDYIFAAMEIFLDILNIFLMLLNI 239
>Z70286-6|CAA94293.1| 3672|Caenorhabditis elegans Hypothetical protein
K08C7.3b protein.
Length = 3672
Score = 29.5 bits (63), Expect = 3.2
Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Frame = +1
Query: 715 GHPSISCYQI*KCGCSENSNCTTS-SQHQRTRDVSIC 822
GHP IS C C+ N+N T S S H + D +C
Sbjct: 1925 GHPQISGESCSPCQCNGNNNLTDSRSCHPNSGDCYLC 1961
>Z70286-5|CAB61016.1| 3704|Caenorhabditis elegans Hypothetical protein
K08C7.3a protein.
Length = 3704
Score = 29.5 bits (63), Expect = 3.2
Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Frame = +1
Query: 715 GHPSISCYQI*KCGCSENSNCTTS-SQHQRTRDVSIC 822
GHP IS C C+ N+N T S S H + D +C
Sbjct: 1925 GHPQISGESCSPCQCNGNNNLTDSRSCHPNSGDCYLC 1961
>AF036687-2|AAB88311.2| 2224|Caenorhabditis elegans Hypothetical
protein C08G9.2 protein.
Length = 2224
Score = 29.5 bits (63), Expect = 3.2
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = -3
Query: 511 YNCSVCTIWRVLEHACSTCYGSRSCVCCIS 422
++C+V T H CST G + +CC+S
Sbjct: 1913 FSCTVLTNGCPATHYCSTMPGQKKGICCVS 1942
>AB016806-1|BAA32347.1| 3704|Caenorhabditis elegans laminin alpha
chain protein.
Length = 3704
Score = 29.5 bits (63), Expect = 3.2
Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Frame = +1
Query: 715 GHPSISCYQI*KCGCSENSNCTTS-SQHQRTRDVSIC 822
GHP IS C C+ N+N T S S H + D +C
Sbjct: 1925 GHPQISGESCSPCQCNGNNNLTDSRSCHPNSGDCYLC 1961
>AB001074-1|BAA19229.1| 3704|Caenorhabditis elegans laminin alpha
protein.
Length = 3704
Score = 29.5 bits (63), Expect = 3.2
Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Frame = +1
Query: 715 GHPSISCYQI*KCGCSENSNCTTS-SQHQRTRDVSIC 822
GHP IS C C+ N+N T S S H + D +C
Sbjct: 1925 GHPQISGESCSPCQCNGNNNLTDSRSCHPNSGDCYLC 1961
>Z83127-3|CAB05629.2| 291|Caenorhabditis elegans Hypothetical
protein T23F6.3 protein.
Length = 291
Score = 29.1 bits (62), Expect = 4.3
Identities = 14/43 (32%), Positives = 18/43 (41%), Gaps = 1/43 (2%)
Frame = -3
Query: 505 CSVCTIWRVLEHACSTCYGSRSCVCCISGWDVSTTY-*CSWCR 380
C+VC V C+ C C C+ W S+T C CR
Sbjct: 210 CTVCFETPVDPQGCNRCMNVIGCKTCVQRWHRSSTQPSCPLCR 252
>U39852-1|AAK39256.2| 2314|Caenorhabditis elegans Hypothetical protein
K10C2.1 protein.
Length = 2314
Score = 29.1 bits (62), Expect = 4.3
Identities = 30/115 (26%), Positives = 47/115 (40%), Gaps = 11/115 (9%)
Frame = +2
Query: 518 PPTTPAVYQAARIRIGPPRKQIGAMTAPIIPVC---------AIHANCLAPNPGVYSIPL 670
P V QA + + PP T PI+ V A+ + P+P S P+
Sbjct: 2190 PTNQSPVTQAPPVTLPPPSVATAGPTGPILTVVPVSSAPTSGAVSSTTNTPSPTNQS-PV 2248
Query: 671 TTMPEPIIR--PNVTIMDIHPFLATKFRSAGVLKTATALPAVSTKEPAMYPYVVF 829
T P + P I+ + P +++ S V TATA P ++T + + V F
Sbjct: 2249 TLPPPSVATAGPTGPILTVVP-VSSAPTSGAVSSTATAAPVITTTKTSSVLSVSF 2302
>U97191-1|AAB52432.1| 805|Caenorhabditis elegans Nuclear pore
complex protein protein11 protein.
Length = 805
Score = 28.3 bits (60), Expect = 7.4
Identities = 27/84 (32%), Positives = 36/84 (42%), Gaps = 5/84 (5%)
Frame = -1
Query: 645 FGAKQLAWMAHTGIMGAVIAPICFLGGPILMRAAWYTAGVVGGLSTIAVCAPS-----GE 481
FG+ Q + TG+ G A GG A +AG+ G S A AP+ G
Sbjct: 49 FGSAQPS-TGSTGLFGNSTATGSMFGGSSAAAPAPASAGIFGN-SGAAAPAPASTSIFGS 106
Query: 480 FLNMRAPLAMGLGAVFAASLAGMF 409
N AP + GA ++ AGMF
Sbjct: 107 SANSAAPATVTFGASAPSAGAGMF 130
>AJ010646-1|CAA09303.1| 1237|Caenorhabditis elegans calcium ATPase
protein.
Length = 1237
Score = 27.9 bits (59), Expect = 9.8
Identities = 10/27 (37%), Positives = 19/27 (70%)
Frame = +2
Query: 293 SARLIIDCVSYNKNPPNTIKPPYKLSE 373
+A+L++DC+S N + + + PP +L E
Sbjct: 467 TAKLMMDCISINSSYSSQVIPPKQLGE 493
>AC025724-13|AAK68551.1| 1234|Caenorhabditis elegans Membrane
calcium atpase protein3, isoform b protein.
Length = 1234
Score = 27.9 bits (59), Expect = 9.8
Identities = 10/27 (37%), Positives = 19/27 (70%)
Frame = +2
Query: 293 SARLIIDCVSYNKNPPNTIKPPYKLSE 373
+A+L++DC+S N + + + PP +L E
Sbjct: 467 TAKLMMDCISINSSYSSQVIPPKQLGE 493
>AC025724-12|AAK68550.1| 1160|Caenorhabditis elegans Membrane
calcium atpase protein3, isoform a protein.
Length = 1160
Score = 27.9 bits (59), Expect = 9.8
Identities = 10/27 (37%), Positives = 19/27 (70%)
Frame = +2
Query: 293 SARLIIDCVSYNKNPPNTIKPPYKLSE 373
+A+L++DC+S N + + + PP +L E
Sbjct: 467 TAKLMMDCISINSSYSSQVIPPKQLGE 493
>AC025724-11|AAM97979.1| 1137|Caenorhabditis elegans Membrane
calcium atpase protein3, isoform c protein.
Length = 1137
Score = 27.9 bits (59), Expect = 9.8
Identities = 10/27 (37%), Positives = 19/27 (70%)
Frame = +2
Query: 293 SARLIIDCVSYNKNPPNTIKPPYKLSE 373
+A+L++DC+S N + + + PP +L E
Sbjct: 467 TAKLMMDCISINSSYSSQVIPPKQLGE 493
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,329,717
Number of Sequences: 27780
Number of extensions: 546831
Number of successful extensions: 1732
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1580
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1728
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2150453690
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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