Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc11c06
         (861 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    25   0.90 
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    25   0.90 
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    23   3.6  

>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 25.0 bits (52), Expect = 0.90
 Identities = 9/32 (28%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = -1

Query: 102 HTENVVIPNIFVKLF-NM*KISVFSASYSISC 10
           H  N+++PN+++++F N   +     S ++SC
Sbjct: 129 HFHNIIMPNVYIRIFPNGSVLYSIRISLTLSC 160



 Score = 23.0 bits (47), Expect = 3.6
 Identities = 12/41 (29%), Positives = 19/41 (46%)
 Frame = -1

Query: 345 VFGGFLLYDTQSIIKRAEMHPPYGFKPYDPINSAISVYLDV 223
           VFG  L +   +   R++MH     K Y P  +  S  +D+
Sbjct: 315 VFGALLEFALVNYASRSDMHSDNIEKKYPPSETEQSTSMDL 355


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 25.0 bits (52), Expect = 0.90
 Identities = 9/32 (28%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = -1

Query: 102 HTENVVIPNIFVKLF-NM*KISVFSASYSISC 10
           H  N+++PN+++++F N   +     S ++SC
Sbjct: 129 HFHNIIMPNVYIRIFPNGSVLYSIRISLTLSC 160



 Score = 23.0 bits (47), Expect = 3.6
 Identities = 12/41 (29%), Positives = 19/41 (46%)
 Frame = -1

Query: 345 VFGGFLLYDTQSIIKRAEMHPPYGFKPYDPINSAISVYLDV 223
           VFG  L +   +   R++MH     K Y P  +  S  +D+
Sbjct: 315 VFGALLEFALVNYASRSDMHSDNIEKKYPPSETEQSTSMDL 355


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 23.0 bits (47), Expect = 3.6
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = -3

Query: 679 HGSKRNGVHTW 647
           HG KR+G H+W
Sbjct: 697 HGIKRSGSHSW 707


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 273,826
Number of Sequences: 438
Number of extensions: 7065
Number of successful extensions: 11
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27795333
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)