Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc11c05
(812 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr 1||... 211 1e-55
SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr 1||... 180 2e-46
SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr 2||... 177 1e-45
SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr 1|... 167 1e-42
SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr... 146 4e-36
SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr 1|||... 132 6e-32
SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr 2||... 130 2e-31
SPAC17H9.09c |ras1|ste5|GTPase Ras1|Schizosaccharomyces pombe|ch... 107 2e-24
SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr... 106 4e-24
SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|ch... 88 1e-18
SPBC428.16c |rhb1||Rheb GTPase Rhb1|Schizosaccharomyces pombe|ch... 85 1e-17
SPAC1565.06c |spg1|sid3|GTPase Spg1|Schizosaccharomyces pombe|ch... 77 3e-15
SPAC23C4.08 |rho3||Rho family GTPase Rho3|Schizosaccharomyces po... 75 2e-14
SPAC16.01 |rho2||Rho family GTPase Rho2|Schizosaccharomyces pomb... 74 2e-14
SPAC20H4.11c |rho5||Rho family GTPase Rho5|Schizosaccharomyces p... 62 7e-11
SPAC1F7.04 |rho1||Rho family GTPase Rho1|Schizosaccharomyces pom... 61 2e-10
SPAC16A10.04 |rho4||Rho family GTPase Rho4|Schizosaccharomyces p... 61 2e-10
SPAC110.03 |cdc42||Rho family GTPase Cdc42|Schizosaccharomyces p... 55 1e-08
SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces ... 48 1e-06
SPBC1539.08 |||ADP-ribosylation factor, Arf family|Schizosacchar... 46 5e-06
SPAC22F3.05c |alp41||ADP-ribosylation factor Alp41|Schizosacchar... 44 3e-05
SPBC4F6.18c |arf1||ADP-ribosylation factor Arf1|Schizosaccharomy... 42 8e-05
SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr 3|||Ma... 33 0.048
SPAC222.14c |||GTP binding protein Sey1 |Schizosaccharomyces pom... 31 0.15
SPBC12C2.08 |dnm1||dynamin Dnm1|Schizosaccharomyces pombe|chr 2|... 28 1.4
SPAC4F10.11 |spn1||septin Spn1|Schizosaccharomyces pombe|chr 1||... 28 1.8
SPBC660.07 |ntp1||alpha,alpha-trehalase Ntp1|Schizosaccharomyces... 27 2.4
SPBC1718.06 |msp1|mgm1|mitochondrial GTPase Msp1|Schizosaccharom... 27 2.4
SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe... 27 2.4
SPACUNK4.08 |||dipeptidyl aminopeptidase |Schizosaccharomyces po... 27 3.2
SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1 |Schizo... 27 4.2
SPAC1D4.12 |rad15|rhp3|transcription factor TFIIH complex subuni... 27 4.2
SPAC821.06 |spn2||septin Spn2|Schizosaccharomyces pombe|chr 1|||... 27 4.2
SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase Abc4|... 26 5.5
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 26 5.5
SPAC23D3.03c |||GTPase activating protein |Schizosaccharomyces p... 26 5.5
SPAC12G12.04 |hsp60|hsp60|mitochondrial heat shock protein Hsp60... 26 5.5
SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase Abc... 26 5.5
SPBC1271.15c |||translation initiation factor IF-2Mt|Schizosacch... 26 5.5
SPCC553.12c ||SPCC794.13|conserved fungal protein|Schizosaccharo... 26 7.3
SPBC16H5.08c |||ribosome biogenesis ATPase, Arb family |Schizosa... 25 9.7
SPBC887.14c |pfh1|pif1|pif1 helicase homolog Pfh1|Schizosaccharo... 25 9.7
>SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr
1|||Manual
Length = 234
Score = 211 bits (515), Expect = 1e-55
Identities = 100/203 (49%), Positives = 141/203 (69%), Gaps = 5/203 (2%)
Frame = -2
Query: 661 ESYEYLFKFLVIGSAGTGKSSLLNNFIGNKFKEDRCHTIGVEFGSKIVNIG----GKSTK 494
ESY+YL K ++ G +GTGKS LL F+ N++ + HT+G++F S+I+++G K K
Sbjct: 4 ESYDYLVKIVLAGPSGTGKSCLLQRFVKNQWDDQVSHTVGIDFASRIISVGMGNQQKRIK 63
Query: 493 LQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRDSFNALANWLRDARTLASPNIVILL 314
LQIWDTAGQE+FRSV R+YYRGAAGA+LVYD+T++DSF L++WL D R +A I ++L
Sbjct: 64 LQIWDTAGQEKFRSVARNYYRGAAGAVLVYDVTNKDSFEELSSWLSDIRAMAPSTICVVL 123
Query: 313 VGNKKDLEDSREVTFTEASQFALENELMFL-ETSAKTGENVEEAFLKCSKTILAKIETGE 137
G+K DL++ R+V+ EA++F E + ETS+ TG NVEE FL TI+ +IE GE
Sbjct: 124 AGSKSDLQNQRQVSTEEAAEFCSEKHISSAHETSSYTGSNVEECFLSVVSTIITRIELGE 183
Query: 136 LDPERIGSGIQYGTNTTKRLTAP 68
+DP+ GIQYG + +R P
Sbjct: 184 IDPQDQSLGIQYGDLSFRRPVHP 206
>SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr
1|||Manual
Length = 214
Score = 180 bits (438), Expect = 2e-46
Identities = 89/171 (52%), Positives = 117/171 (68%)
Frame = -2
Query: 661 ESYEYLFKFLVIGSAGTGKSSLLNNFIGNKFKEDRCHTIGVEFGSKIVNIGGKSTKLQIW 482
+ Y+YLFK ++IG +G GKS+LL F N+F + TIGVEF ++ + + K K QIW
Sbjct: 5 DEYDYLFKTVLIGDSGVGKSNLLMRFTRNEFNIESKSTIGVEFATRNIVLDNKKIKAQIW 64
Query: 481 DTAGQERFRSVTRSYYRGAAGALLVYDITSRDSFNALANWLRDARTLASPNIVILLVGNK 302
DTAGQER+R++T +YYRGA GAL+VYDIT + SF+ + WL++ R A NIVI+LVGNK
Sbjct: 65 DTAGQERYRAITSAYYRGAVGALIVYDITKQSSFDNVGRWLKELREHADSNIVIMLVGNK 124
Query: 301 KDLEDSREVTFTEASQFALENELMFLETSAKTGENVEEAFLKCSKTILAKI 149
DL R V+ EA FA EN L F+ETSA NVEEAF +T+L +I
Sbjct: 125 TDLLHLRAVSTEEAQAFAAENNLSFIETSAMDASNVEEAF----QTVLTEI 171
>SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 203
Score = 177 bits (432), Expect = 1e-45
Identities = 87/193 (45%), Positives = 119/193 (61%)
Frame = -2
Query: 667 MSESYEYLFKFLVIGSAGTGKSSLLNNFIGNKFKEDRCHTIGVEFGSKIVNIGGKSTKLQ 488
M+ Y+YLFK L+IG +G GKS LL F + + E TIGV+F + + GK+ KLQ
Sbjct: 1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTFELEGKTVKLQ 60
Query: 487 IWDTAGQERFRSVTRSYYRGAAGALLVYDITSRDSFNALANWLRDARTLASPNIVILLVG 308
IWDTAGQERFR++T SYYRGA G ++VYD+T +DSFN + WL++ A + LLVG
Sbjct: 61 IWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQDSFNNVKQWLQEIDRYAVEGVNRLLVG 120
Query: 307 NKKDLEDSREVTFTEASQFALENELMFLETSAKTGENVEEAFLKCSKTILAKIETGELDP 128
NK D+ D + V ++ A +FA + FLETSAK NVE+AFL S+ I ++
Sbjct: 121 NKSDMVDKKVVEYSVAKEFADSLNIPFLETSAKDSTNVEQAFLTMSRQIKERMGNNTFAS 180
Query: 127 ERIGSGIQYGTNT 89
S ++ G T
Sbjct: 181 SNAKSSVKVGQGT 193
>SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 200
Score = 167 bits (407), Expect = 1e-42
Identities = 82/193 (42%), Positives = 117/193 (60%)
Frame = -2
Query: 664 SESYEYLFKFLVIGSAGTGKSSLLNNFIGNKFKEDRCHTIGVEFGSKIVNIGGKSTKLQI 485
++SY+YL K L+IG +G GKS LL F + F TIG++F + + + GK KLQI
Sbjct: 3 TKSYDYLIKLLLIGDSGVGKSCLLLRFSEDSFTPSFITTIGIDFKIRTIELDGKRIKLQI 62
Query: 484 WDTAGQERFRSVTRSYYRGAAGALLVYDITSRDSFNALANWLRDARTLASPNIVILLVGN 305
WDTAGQERFR++T +YYRGA G LL+YD+T + SF+ + W + AS N+ +L+GN
Sbjct: 63 WDTAGQERFRTITTAYYRGAMGILLLYDVTDKKSFDNVRTWFSNVEQHASENVYKILIGN 122
Query: 304 KKDLEDSREVTFTEASQFALENELMFLETSAKTGENVEEAFLKCSKTILAKIETGELDPE 125
K D ED R+V+F + A E + FLE SAKT NV+EAF ++ I + E +
Sbjct: 123 KCDCEDQRQVSFEQGQALADELGVKFLEASAKTNVNVDEAFFTLAREIKKQKIDAENEFS 182
Query: 124 RIGSGIQYGTNTT 86
+ + G + T
Sbjct: 183 NQANNVDLGNDRT 195
>SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 201
Score = 146 bits (353), Expect = 4e-36
Identities = 74/180 (41%), Positives = 114/180 (63%), Gaps = 5/180 (2%)
Frame = -2
Query: 667 MSESYEYL---FKFLVIGSAGTGKSSLLNNFIGNKFKEDRCHTIGVEFGSKIVNIGGKST 497
MSE+Y + FK + +G GK+SL+ F+ ++F TIG++F SK + + ++
Sbjct: 1 MSENYSFSLRKFKLVFLGEQSVGKTSLITRFMYDQFDNTYQATIGIDFLSKTMYLEDRTV 60
Query: 496 KLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRDSFNALANWLRDARTLASPNIVIL 317
+LQ+WDTAGQERFRS+ SY R ++ A++VYDIT+ +SF W+ D R +++I+
Sbjct: 61 RLQLWDTAGQERFRSLIPSYIRDSSVAIIVYDITNHNSFVNTEKWIEDVRAERGDDVIIV 120
Query: 316 LVGNKKDLEDSREVTFTEASQFALENELMFLETSAKTGENVEEAFLKCSKTI--LAKIET 143
LVGNK DL D R+VT E + A E ++M +ETSAK G NV+ F K ++ + + +ET
Sbjct: 121 LVGNKTDLADKRQVTQEEGEKKAKELKIMHMETSAKAGHNVKLLFRKIAQMLPGMENVET 180
>SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr
1|||Manual
Length = 211
Score = 132 bits (319), Expect = 6e-32
Identities = 80/206 (38%), Positives = 117/206 (56%), Gaps = 3/206 (1%)
Frame = -2
Query: 640 KFLVIGSAGTGKSSLLNNFIGNKFKEDRCHTIGVEFGSKIVNIG-GKSTKLQIWDTAGQE 464
K +++G + GKSSL+ F+ ++F + R TIG F ++ + I S KL+IWDTAGQE
Sbjct: 16 KLVLLGDSAVGKSSLVLRFVKDQFDDYRESTIGAAFLTQTLPIDENTSVKLEIWDTAGQE 75
Query: 463 RFRSVTRSYYRGAAGALLVYDITSRDSFNALANWLRDARTLASPNIVILLVGNKKDL-ED 287
R++S+ YYR A A++VYDIT S +W+++ + A IVI L GNK DL ++
Sbjct: 76 RYKSLAPMYYRNANCAIVVYDITQAASLEKAKSWIKELQRQAPEGIVIALAGNKLDLAQE 135
Query: 286 SREVTFTEASQFALENELMFLETSAKTGENVEEAFLKCSKTILAKIETGELDPERIGSGI 107
R V +A +A E L+F ETSAKT ENV E F +K + + +L+ R +
Sbjct: 136 RRAVEKADAEAYAAEANLLFFETSAKTAENVNELFTAIAKKLPLE---DKLNQAR--GAV 190
Query: 106 QYGTNTTKRLTAPKRPARTPS-ECAC 32
G N ++ RPA PS C+C
Sbjct: 191 NRGVNLSE-----ARPAAQPSGSCSC 211
>SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr
2|||Manual
Length = 205
Score = 130 bits (314), Expect = 2e-31
Identities = 69/184 (37%), Positives = 112/184 (60%), Gaps = 6/184 (3%)
Frame = -2
Query: 667 MSESYEYLFKFLVIGSAGTGKSSLLNNFIGNKFKEDRCHTIGVEFGSKIVNIGGKSTKLQ 488
M+ ++L K +++G +G GK+S++N ++ KF +D TIG +F +K V + K LQ
Sbjct: 1 MAGKKKHLLKVIILGESGVGKTSIMNQYVNRKFSKDYKATIGADFLTKEVLVDDKVVTLQ 60
Query: 487 IWDTAGQERFRSVTRSYYRGAAGALLVYDITSRDSFNALANWLRDARTLASPN----IVI 320
+WDTAGQERF+S+ ++YRGA +LVYD+ + SF L +W + ASP+
Sbjct: 61 LWDTAGQERFQSLGVAFYRGADCCVLVYDVNNSKSFETLDSWRDEFLIQASPSNPETFPF 120
Query: 319 LLVGNKKDLED-SREVTFTEASQFA-LENELMFLETSAKTGENVEEAFLKCSKTILAKIE 146
+L+GNK D+E+ R V+ ++A F E+ + ETSAK NV+EAF +K L ++
Sbjct: 121 ILLGNKVDVEEQKRMVSKSKALAFCQARGEIPYFETSAKEAINVQEAFETVAKLALENMD 180
Query: 145 TGEL 134
+ ++
Sbjct: 181 SDDI 184
>SPAC17H9.09c |ras1|ste5|GTPase Ras1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 107 bits (257), Expect = 2e-24
Identities = 73/220 (33%), Positives = 109/220 (49%), Gaps = 3/220 (1%)
Frame = -2
Query: 667 MSESYEYLFKFLVIGSAGTGKSSLLNNFIGNKFKEDRCHTIGVEFGSKIVNIGGKSTKLQ 488
M +Y +K +V+G G GKS+L I + F ++ TI + K I G+ L
Sbjct: 1 MRSTYLREYKLVVVGDGGVGKSALTIQLIQSHFVDEYDPTIEDSYRKKC-EIDGEGALLD 59
Query: 487 IWDTAGQERFRSVTRSYYRGAAGALLVYDITSRDSFNALANWLRD-ARTLASPNIVILLV 311
+ DTAGQE + ++ Y R G LLVY+ITSR SF+ ++ + + R ++LV
Sbjct: 60 VLDTAGQEEYSAMREQYMRTGEGFLLVYNITSRSSFDEISTFYQQILRVKDKDTFPVVLV 119
Query: 310 GNKKDLEDSREVTFTEASQFALENELMFLETSAKTGENVEEAFLKCSKTI--LAKIETGE 137
NK DLE R V+ E Q A +++ETSAK NVEEAF +TI K E
Sbjct: 120 ANKCDLEAERVVSRAEGEQLAKSMHCLYVETSAKLRLNVEEAFYSLVRTIRRYNKSEEKG 179
Query: 136 LDPERIGSGIQYGTNTTKRLTAPKRPARTPSECACRV*II 17
++ Q +T KR +A ++T E + + +I
Sbjct: 180 FQNKQAVQTAQVPASTAKRASAVNN-SKTEDEVSTKCCVI 218
>SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr
1|||Manual
Length = 208
Score = 106 bits (254), Expect = 4e-24
Identities = 59/177 (33%), Positives = 97/177 (54%), Gaps = 7/177 (3%)
Frame = -2
Query: 667 MSESYEYLFKFLVIGSAGTGKSSLLNNFIGNKFKEDRCHTIGVEFGSKIVNIGGKSTKLQ 488
MS K +++G +G GK+ L+N F+ KF + TIG +F +K V + K LQ
Sbjct: 1 MSAQKRVFLKVVILGDSGVGKTCLMNQFVNQKFSREYKATIGADFLTKDVVVDDKLVTLQ 60
Query: 487 IWDTAGQERFRSVTRSYYRGAAGALLVYDITSRDSFNALANWLRDARTLASPN---IVIL 317
+WDTAGQERF+S+ ++YRGA ++VY++ + SF+++ NW ++ S + +
Sbjct: 61 LWDTAGQERFQSLGMAFYRGADCCVIVYNVNNSKSFDSVENWRQEFLYQTSQDECAFPFI 120
Query: 316 LVGNKKDLEDS-REVTFTEASQFALE---NELMFLETSAKTGENVEEAFLKCSKTIL 158
+VGN+ D + S R V+ A + + ++ E SAK NV + F S+ L
Sbjct: 121 IVGNQIDKDASKRAVSLHRALDYCKSKHGSNMIHFEASAKENTNVTDLFETVSRLAL 177
>SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 216
Score = 88.2 bits (209), Expect = 1e-18
Identities = 48/162 (29%), Positives = 88/162 (54%)
Frame = -2
Query: 643 FKFLVIGSAGTGKSSLLNNFIGNKFKEDRCHTIGVEFGSKIVNIGGKSTKLQIWDTAGQE 464
FK +++G GTGK++ + + +F++ T+GVE + +WDTAGQE
Sbjct: 10 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATLGVEVHPLHFHTNFGEICFNVWDTAGQE 69
Query: 463 RFRSVTRSYYRGAAGALLVYDITSRDSFNALANWLRDARTLASPNIVILLVGNKKDLEDS 284
+ + YY ++++D+TSR ++ + +W RD + NI I+L GNK D+++
Sbjct: 70 KLGGLRDGYYIQGQCGIIMFDVTSRITYKNVPHWWRDLVRVCE-NIPIVLCGNKVDVKE- 127
Query: 283 REVTFTEASQFALENELMFLETSAKTGENVEEAFLKCSKTIL 158
R+V +A F + L + + SAK+ N E+ FL ++ ++
Sbjct: 128 RKVK-AKAITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLV 168
>SPBC428.16c |rhb1||Rheb GTPase Rhb1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 185
Score = 84.6 bits (200), Expect = 1e-17
Identities = 62/179 (34%), Positives = 90/179 (50%), Gaps = 2/179 (1%)
Frame = -2
Query: 640 KFLVIGSAGTGKSSLLNNFIGNKFKEDRCHTIGVEFGSKIVNIGGKSTKLQIWDTAGQER 461
+ V+GS GKSSL ++ N F E TI F SK + G+ +I DTAGQ+
Sbjct: 8 RIAVLGSRSVGKSSLTVQYVENHFVESYYPTIENTF-SKNIKYKGQEFATEIIDTAGQDE 66
Query: 460 FRSVTRSYYRGAAGALLVYDITSRDSFNALANWLRDA--RTLASPNIVILLVGNKKDLED 287
+ + + G G +LVY ITS+ SF + +RD + + I++VGNK DL
Sbjct: 67 YSILNSKHSIGIHGYVLVYSITSKSSFE-MVKIVRDKILNHTGTEWVPIVVVGNKSDLHM 125
Query: 286 SREVTFTEASQFALENELMFLETSAKTGENVEEAFLKCSKTILAKIETGELDPERIGSG 110
R VT E A E + + E SA+ ENV AF + I+++IE + +P G G
Sbjct: 126 QRAVTAEEGKALANEWKCAWTEASARHNENVARAF----ELIISEIEK-QANPSPPGDG 179
>SPAC1565.06c |spg1|sid3|GTPase Spg1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 198
Score = 77.0 bits (181), Expect = 3e-15
Identities = 50/169 (29%), Positives = 84/169 (49%), Gaps = 8/169 (4%)
Frame = -2
Query: 631 VIGSAGTGKSSLLNNFIGNKFKEDRCHTIGVEFGSKIVNIGGKSTKLQIWDTAGQERFRS 452
+IG + GK+SL+ ++ F E+ T+GV F K ++I IWD GQ F +
Sbjct: 15 MIGDSSIGKTSLMVTYVQGSFDEESTQTLGVNFMEKTISIRNTEITFSIWDLGGQREFVN 74
Query: 451 VTRSYYRGAAGALLVYDITSRDSFNALANWLRDARTLASPNIVILLVGNKKD------LE 290
+ A L ++D++ + + N++ W R AR + V +L+G K D E
Sbjct: 75 MLPMVCNDAVAILFMFDLSRKSTLNSIKEWYRQARGF-NKTAVPILIGTKYDHFMTFPRE 133
Query: 289 DSREVTFTEASQF--ALENELMFLETSAKTGENVEEAFLKCSKTILAKI 149
D E+T +A ++ A++ L+F TS NV++ F K +LAK+
Sbjct: 134 DQEEIT-KQARRYAKAMKASLVFCSTSHSI--NVQKIF----KIVLAKV 175
>SPAC23C4.08 |rho3||Rho family GTPase Rho3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 205
Score = 74.5 bits (175), Expect = 2e-14
Identities = 54/180 (30%), Positives = 85/180 (47%), Gaps = 10/180 (5%)
Frame = -2
Query: 640 KFLVIGSAGTGKSSLLNNFIGNKFKEDRCHTIGVEFGSKIVNIGGKSTKLQIWDTAGQER 461
K +++G GK+SLLN F F + TI + I + G S +L +WDTAGQE
Sbjct: 15 KIVILGDGAAGKTSLLNVFTKGYFPQVYEPTIFENYIHDIF-VDGNSIELSLWDTAGQEE 73
Query: 460 FRSVTRSYYRGAAGALLVYDITSRDSF-NALANWLRDARTLASPNIVILLVGNKKDL--- 293
+ + Y ++ + + SRDS N + WL + + P + ++LV K DL
Sbjct: 74 YDQLRSLSYSDTHVIMICFAVDSRDSLENVITKWLPEVSS-NCPGVKLVLVALKCDLRGA 132
Query: 292 -----EDSREVTFTEASQFALE-NELMFLETSAKTGENVEEAFLKCSKTILAKIETGELD 131
+ S+ + + E A + N + +LE SAK V EAF + ++ LA G D
Sbjct: 133 DEEQVDHSKIIDYEEGLAAAKKINAVRYLECSAKLNRGVNEAFTEAARVALAAQPRGTKD 192
>SPAC16.01 |rho2||Rho family GTPase Rho2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 200
Score = 74.1 bits (174), Expect = 2e-14
Identities = 55/184 (29%), Positives = 86/184 (46%), Gaps = 14/184 (7%)
Frame = -2
Query: 667 MSESYEYLFKFLVIGSAGTGKSSLLNNFIGNKFKEDRCHTIGVEFGSKIVNIGGKSTKLQ 488
M +S K +V+G GK+SLL+ F F + T+ + S + GKS +L
Sbjct: 1 MLQSQPIRRKLVVVGDGACGKTSLLSVFTLGYFPTEYVPTVFENYVSDC-RVDGKSVQLA 59
Query: 487 IWDTAGQERFRSVTRSYYRGAAGALLVYDITSRDSF-NALANWLRDARTLASPNIVILLV 311
+WDTAGQE + + Y A L+ + I S DS N W+ + TL PN+ +LV
Sbjct: 60 LWDTAGQEEYERLRPMSYAKAHIILVGFAIDSPDSLENVSTKWIEEINTLC-PNVPFILV 118
Query: 310 GNKKDLEDS---------REVTFTEASQFALENELM----FLETSAKTGENVEEAFLKCS 170
G K DL R F ++ Q L + + ++E S+ TG+ V++ F +
Sbjct: 119 GMKADLRSDPVAIEEMRRRNQNFVKSQQAELVAQRIGARKYMECSSLTGDGVDDVFEAAT 178
Query: 169 KTIL 158
+ L
Sbjct: 179 RAAL 182
>SPAC20H4.11c |rho5||Rho family GTPase Rho5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 200
Score = 62.5 bits (145), Expect = 7e-11
Identities = 49/179 (27%), Positives = 80/179 (44%), Gaps = 14/179 (7%)
Frame = -2
Query: 640 KFLVIGSAGTGKSSLLNNFIGNKFKEDRCHTIGVEFGSKIVNIGGKSTKLQIWDTAGQER 461
K +++G GK+ LL F F E T+ + + V + G+ +L +WDTAGQE
Sbjct: 8 KLVIVGDGACGKTCLLIVFSKGTFPEVYVPTVFENYVAD-VEVDGRHIELALWDTAGQED 66
Query: 460 FRSVTRSYYRGAAGALLVYDITSRDSF-NALANWLRDARTLASPNIVILLVGNKKDLED- 287
+ + Y + L+ + + + +S N W+ + S N+ ILLVG K DL +
Sbjct: 67 YDRLRPLSYPDSHVVLICFSVDAPESLDNVQEKWISEVLHFCS-NLPILLVGCKVDLRND 125
Query: 286 -----------SREVTFTEASQFALE-NELMFLETSAKTGENVEEAFLKCSKTILAKIE 146
+ +TF E A + +LE SAK E V E F ++ + K +
Sbjct: 126 PKTIEELSKTSQKPITFEEGQVVAQKIGAYKYLECSAKLNEGVNEVFETAARASMLKFK 184
>SPAC1F7.04 |rho1||Rho family GTPase Rho1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 202
Score = 60.9 bits (141), Expect = 2e-10
Identities = 49/177 (27%), Positives = 78/177 (44%), Gaps = 14/177 (7%)
Frame = -2
Query: 640 KFLVIGSAGTGKSSLLNNFIGNKFKEDRCHTIGVEFGSKIVNIGGKSTKLQIWDTAGQER 461
K +++G GK+ LL F F E T+ + + V + G+ +L +WDTAGQE
Sbjct: 8 KLVIVGDGACGKTCLLIVFSKGTFPEVYVPTVFENYVAD-VEVDGRHVELALWDTAGQED 66
Query: 460 FRSVTRSYYRGAAGALLVYDITSRDSF-NALANWLRDARTLASPNIVILLVGNKKDLEDS 284
+ + Y + L+ + + S DS N W+ + S ++ ILLV K DL +
Sbjct: 67 YDRLRPLSYPDSHVILICFAVDSPDSLDNVQEKWISEVLHFCS-SLPILLVACKADLRND 125
Query: 283 REV-----------TFTEASQFALE--NELMFLETSAKTGENVEEAFLKCSKTILAK 152
++ TE Q + +LE SAKT E V E F ++ + K
Sbjct: 126 PKIIEELSKTNQHPVTTEEGQAVAQKIGAYKYLECSAKTNEGVREVFESATRAAMLK 182
>SPAC16A10.04 |rho4||Rho family GTPase Rho4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 203
Score = 60.9 bits (141), Expect = 2e-10
Identities = 50/167 (29%), Positives = 70/167 (41%), Gaps = 14/167 (8%)
Frame = -2
Query: 640 KFLVIGSAGTGKSSLLNNFIGNKFKEDRCHTIGVEFGSKIV-NIGGKSTKLQIWDTAGQE 464
K +V+G G GK+ LL F F E T+ + + I K +L +WDTAGQE
Sbjct: 16 KLVVVGDGGCGKTCLLIVFSSGTFPERYVPTVFENYITDITYGPNSKVIELALWDTAGQE 75
Query: 463 RFRSVTRSYYRGAAGALLVYDITSRDSFNALA-NWLRDARTLASPNIVILLVGNKKDLED 287
+ + Y + LL + I S N + W + + P I+LVG K DL
Sbjct: 76 EYDRLRPLSYPNSNVILLCFSIDCPASLNNVTEKWYPEVQHFC-PRTPIVLVGLKADLRK 134
Query: 286 SRE------------VTFTEASQFALENELMFLETSAKTGENVEEAF 182
R VT+ +A AL ++E SAK V E F
Sbjct: 135 DRNATEVLRTQGLTPVTYQQAQSVALSMNAPYVECSAKENTGVNEVF 181
>SPAC110.03 |cdc42||Rho family GTPase Cdc42|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 192
Score = 55.2 bits (127), Expect = 1e-08
Identities = 37/123 (30%), Positives = 58/123 (47%), Gaps = 1/123 (0%)
Frame = -2
Query: 640 KFLVIGSAGTGKSSLLNNFIGNKFKEDRCHTIGVEFGSKIVNIGGKSTKLQIWDTAGQER 461
K +V+G GK+ LL ++ NKF D T+ + ++ IG + L ++DTAGQE
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKFPSDYVPTVFDNYAVTVM-IGDEPYTLGLFDTAGQED 63
Query: 460 FRSVTRSYYRGAAGALLVYDITSRDSF-NALANWLRDARTLASPNIVILLVGNKKDLEDS 284
+ + Y L+ + +TS SF N W + P + L+VG + DL D
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVTSPASFENVKEKWFPEVHH-HCPGVPCLIVGTQIDLRDD 122
Query: 283 REV 275
V
Sbjct: 123 PSV 125
>SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 308
Score = 48.4 bits (110), Expect = 1e-06
Identities = 49/173 (28%), Positives = 77/173 (44%), Gaps = 12/173 (6%)
Frame = -2
Query: 640 KFLVIGSAGTGKSSLLNNFIGNKFKEDRCH---TIGVEFGSKIVNIGGKSTKLQIWDTAG 470
K L++G +G+GKSS+ + N +D TI +E S + +G + L +WD G
Sbjct: 4 KVLLMGRSGSGKSSMRSIVFSNYVAKDTRRLGATIDIEH-SHVRFLG--NLVLNLWDCGG 60
Query: 469 QERFR----SVTRSY-YRGAAGALLVYDITSRDSFNALANWLR--DARTLASPNIVILLV 311
QE F S R + +R + V+D+ SR+ L + +A SP + +
Sbjct: 61 QEAFMENYLSAQRDHIFRNVQVLIYVFDVESREFERDLVTFRNCLEATVANSPQARVFCL 120
Query: 310 GNKKDL--EDSREVTFTEASQFALENELMFLETSAKTGENVEEAFLKCSKTIL 158
+K DL ED R++ F E LE LET+ +E K I+
Sbjct: 121 IHKMDLVQEDLRDLVFEERKAILLETS-KDLETTCLATSIWDETLFKAWSAIV 172
>SPBC1539.08 |||ADP-ribosylation factor, Arf
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 184
Score = 46.4 bits (105), Expect = 5e-06
Identities = 42/170 (24%), Positives = 79/170 (46%), Gaps = 7/170 (4%)
Frame = -2
Query: 640 KFLVIGSAGTGKSSLLNNFIGNKFKEDRCHTIGVEFGSKIVNIGGKSTKLQIWDTAGQER 461
+ L++G GK+++L K K ++ G + + K+ K +WD GQ++
Sbjct: 23 RILMLGLDAAGKTTILY-----KLKLNQSVVTIPTVGFNVETVTYKNIKFNVWDVGGQDK 77
Query: 460 FRSVTRSYYRGAAGALLVYDITSRDSFNALANWLRDARTLASP----NIVILLVGNKKDL 293
R + R Y+ G G + V D S DS N ++ ++ + S + ++L++ NK+DL
Sbjct: 78 IRPLWRHYFTGTKGLIFVVD--SADS-NRISEARQELHRIISDREMRDCLLLVLANKQDL 134
Query: 292 EDS-REVTFTEASQF-ALENELMFLE-TSAKTGENVEEAFLKCSKTILAK 152
+ T+ Q L++ L ++ T A TG+ + E S+ K
Sbjct: 135 PGALSPAQITDVLQLDKLKDRLWNVQPTCALTGDGLLEGLAWLSQNAKLK 184
>SPAC22F3.05c |alp41||ADP-ribosylation factor
Alp41|Schizosaccharomyces pombe|chr 1|||Manual
Length = 186
Score = 43.6 bits (98), Expect = 3e-05
Identities = 43/192 (22%), Positives = 84/192 (43%), Gaps = 8/192 (4%)
Frame = -2
Query: 682 LKVTNMSESYEYLFKFLVIGSAGTGKSSLLNNFIGNKFKEDRCHTIGVEFGSKIVNIGGK 503
L + + E + L++G GK+++L + E + FG +I + +
Sbjct: 4 LTILRQQKLKEREVRVLLLGLDNAGKTTILKCLLNEDVNE-----VSPTFGFQIRTLEVE 58
Query: 502 STKLQIWDTAGQERFRSVTRSYYRGAAGALLVY----DITSRDSFNALANWLRDARTLAS 335
+ IWD GQ+ R+ ++Y+ + V D+ + N L L + + L +
Sbjct: 59 GLRFTIWDIGGQKTLRNFWKNYFESTEAIIWVVDSLDDLRLEECRNTLQELLVEEKLLFT 118
Query: 334 PNIVILLVGNKKDLE---DSREVT-FTEASQFALENELMFLETSAKTGENVEEAFLKCSK 167
IL++ NK D+ S E++ S++ + +F SA TG N+++A +
Sbjct: 119 S---ILVLANKSDVSGALSSEEISKILNISKYKSSHWRIF-SVSALTGLNIKDA-ISWLA 173
Query: 166 TILAKIETGELD 131
L +I+ G +D
Sbjct: 174 NDLKEIKLGTID 185
>SPBC4F6.18c |arf1||ADP-ribosylation factor Arf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 180
Score = 42.3 bits (95), Expect = 8e-05
Identities = 35/156 (22%), Positives = 69/156 (44%), Gaps = 5/156 (3%)
Frame = -2
Query: 640 KFLVIGSAGTGKSSLLNNFIGNKFKEDRCHTIGVEFGSKIVNIGGKSTKLQIWDTAGQER 461
+ L++G GK+++L K K T G + + ++ +WD GQ++
Sbjct: 19 RILMVGLDAAGKTTILY-----KLKLGEIVTTIPTIGFNVETVEYRNISFTVWDVGGQDK 73
Query: 460 FRSVTRSYYRGAAGALLVYDITSRDSFNALANWLRDARTLASPNIVILLV-GNKKDLE-- 290
R + R Y++ G + V D R+ + L+ +LLV NK+DL
Sbjct: 74 IRPLWRHYFQNTQGIIFVVDSNDRERISEAHEELQRMLNEDELRDALLLVFANKQDLPNA 133
Query: 289 -DSREVTFTEASQFALENELMFLE-TSAKTGENVEE 188
++ E+T + +L + +++ T A +G+ + E
Sbjct: 134 MNAAEIT-DKLGLHSLRHRQWYIQATCATSGDGLYE 168
>SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 630
Score = 33.1 bits (72), Expect = 0.048
Identities = 47/175 (26%), Positives = 74/175 (42%), Gaps = 11/175 (6%)
Frame = -2
Query: 640 KFLVIGSAGTGKSSLLNNFIGNKFKEDRCHTIGVEFGSKIVNI-----GGKSTKLQIWDT 476
+ ++ G G GKSSL++ I +ED +I F I++I L + DT
Sbjct: 5 RVVICGDQGVGKSSLISALI----QEDNVTSIPKVF--PIISIPSNPDSNDDVSLVLVDT 58
Query: 475 AGQERFRSVTRSYYRGAAGALLVYDITSRDSFNALA-NWLRDARTLASPNIVILLVGNK- 302
R + + A LVY + S+ ++ WL R+L N+ I+L NK
Sbjct: 59 QSDSNEREYLAAEIKKANVICLVY--SDNYSYERVSIFWLPYFRSL-GVNVPIVLCENKS 115
Query: 301 KDLEDSREVTFTEASQFALENELMFLET----SAKTGENVEEAFLKCSKTILAKI 149
+DL++ + + E L NE +E SA NV E F C ++ I
Sbjct: 116 EDLDNYQGLHTIEHEMIPLINEFKEIEACILCSALEKINVNELFYMCRACVIYPI 170
Score = 28.7 bits (61), Expect = 1.0
Identities = 27/99 (27%), Positives = 46/99 (46%), Gaps = 3/99 (3%)
Frame = -2
Query: 646 LFKFLVIGSAGTGKSSLLNNFIGNKFKEDRCHTI--GVEFGSKIVNIGGKSTKLQIWDTA 473
+F V+GS GK++LL++FI N +T+ VEF S + + +
Sbjct: 421 VFLCFVVGSKSCGKTALLSSFINNNTNRLTPNTVVNSVEFQS--------TQRYLVLSEI 472
Query: 472 GQERFRSVTRSYYRGAAGAL-LVYDITSRDSFNALANWL 359
G+ + A L L+YD ++ +SF+ +AN L
Sbjct: 473 GETDLDILAEPKSLEACDILCLLYDSSNPNSFSFIANLL 511
>SPAC222.14c |||GTP binding protein Sey1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 762
Score = 31.5 bits (68), Expect = 0.15
Identities = 13/21 (61%), Positives = 15/21 (71%)
Frame = -2
Query: 631 VIGSAGTGKSSLLNNFIGNKF 569
V+GS TGKS+LLNN G F
Sbjct: 44 VLGSQSTGKSTLLNNLFGTSF 64
>SPBC12C2.08 |dnm1||dynamin Dnm1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 781
Score = 28.3 bits (60), Expect = 1.4
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = -2
Query: 634 LVIGSAGTGKSSLLNNFIGNKF 569
+V+GS GKSS+L N +G F
Sbjct: 30 VVVGSQSCGKSSVLENIVGKDF 51
>SPAC4F10.11 |spn1||septin Spn1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 469
Score = 27.9 bits (59), Expect = 1.8
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = -2
Query: 643 FKFLVIGSAGTGKSSLLNNFIGNKFKEDRCHTIGVEFG 530
F LV+G +G+GKS+L+N + ++ +FG
Sbjct: 96 FNVLVLGESGSGKSTLVNTLLNRDVYPPTQKSLTGDFG 133
>SPBC660.07 |ntp1||alpha,alpha-trehalase Ntp1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 735
Score = 27.5 bits (58), Expect = 2.4
Identities = 16/52 (30%), Positives = 25/52 (48%)
Frame = -2
Query: 553 HTIGVEFGSKIVNIGGKSTKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDI 398
H + E+G++ VNI G + + W A E + S+ R A GA D+
Sbjct: 663 HRVEAEYGNQGVNIKGVAREGFGWVNASYEVGLTFCNSHMRRALGACTTPDV 714
>SPBC1718.06 |msp1|mgm1|mitochondrial GTPase
Msp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 903
Score = 27.5 bits (58), Expect = 2.4
Identities = 11/22 (50%), Positives = 17/22 (77%)
Frame = -2
Query: 634 LVIGSAGTGKSSLLNNFIGNKF 569
+VIGS +GKSS+L +G++F
Sbjct: 267 VVIGSQSSGKSSVLEAIVGHEF 288
>SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1465
Score = 27.5 bits (58), Expect = 2.4
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = -2
Query: 631 VIGSAGTGKSSLLNNFIGNKFK 566
+ G G GKSSLL +GN +K
Sbjct: 612 IFGKVGAGKSSLLEACMGNMYK 633
>SPACUNK4.08 |||dipeptidyl aminopeptidase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 793
Score = 27.1 bits (57), Expect = 3.2
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = -2
Query: 412 LVYDITSRDSFNALANWLRDARTLASPNIV 323
L YD T D FN L +W+ + L+SP+ +
Sbjct: 203 LTYDGTV-DVFNGLTDWIYEEEVLSSPSTI 231
>SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1336
Score = 26.6 bits (56), Expect = 4.2
Identities = 12/31 (38%), Positives = 21/31 (67%)
Frame = -2
Query: 685 NLKVTNMSESYEYLFKFLVIGSAGTGKSSLL 593
+L + N+S S E K ++G +G+GKS+L+
Sbjct: 1115 HLALNNVSLSIEAREKVAIVGISGSGKSTLV 1145
>SPAC1D4.12 |rad15|rhp3|transcription factor TFIIH complex subunit
Rad15|Schizosaccharomyces pombe|chr 1|||Manual
Length = 772
Score = 26.6 bits (56), Expect = 4.2
Identities = 16/37 (43%), Positives = 19/37 (51%), Gaps = 3/37 (8%)
Frame = +3
Query: 108 IPEPILSGSNSPVSILARIVFEHFRK---ASSTFSPV 209
+P PIL S SI + VFE FR S T SP+
Sbjct: 427 VPNPILRFSCLDASIAIKPVFERFRSVIITSGTLSPL 463
>SPAC821.06 |spn2||septin Spn2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 331
Score = 26.6 bits (56), Expect = 4.2
Identities = 9/20 (45%), Positives = 16/20 (80%)
Frame = -2
Query: 649 YLFKFLVIGSAGTGKSSLLN 590
+ F +V+G +G+GKS+L+N
Sbjct: 31 FQFNVMVVGPSGSGKSTLIN 50
>SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase
Abc4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1469
Score = 26.2 bits (55), Expect = 5.5
Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 4/42 (9%)
Frame = -2
Query: 634 LVIGSAGTGKSSLLNNFIG----NKFKEDRCHTIGVEFGSKI 521
+VIG G+GKSSL++ +G NK + + GV + S++
Sbjct: 645 IVIGPTGSGKSSLISALLGELSLNKGSYNLPRSKGVSYVSQV 686
>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 536
Score = 26.2 bits (55), Expect = 5.5
Identities = 26/85 (30%), Positives = 40/85 (47%)
Frame = +3
Query: 186 ASSTFSPVLALVSKNINSFSRAN*LASVKVTSLESSKSFLLPTSKITILGLARVRASLSQ 365
ASS+F L S +S S A+ L S +L SS S PTS + L+ +SL
Sbjct: 75 ASSSFITSLVSSSSQQSSSSSAS-LTSSSSATLTSSSS-ASPTSSSSSHALSSSSSSLVA 132
Query: 366 LARALNESLDVISYTSRAPAAPR*Y 440
+ + S +S++S P++ Y
Sbjct: 133 SSSSSGMSSSSLSHSSSVPSSSSSY 157
>SPAC23D3.03c |||GTPase activating protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 472
Score = 26.2 bits (55), Expect = 5.5
Identities = 28/89 (31%), Positives = 44/89 (49%), Gaps = 6/89 (6%)
Frame = -2
Query: 607 KSSLLNNFIGNKFKEDRCHTIGVEFGSKIVNIGGKSTKLQIW-DTAGQERFRSVTR---S 440
K+ +NN N+F+ED C + ++ S + + T+ + D G R S R S
Sbjct: 255 KAEQMNN--ANQFREDVC-ALELDLQSTMPHYSLFHTEGPLRRDLIGLLRAYSYYRFDTS 311
Query: 439 YYRGAA--GALLVYDITSRDSFNALANWL 359
Y G + GALL+ ++ +FN LAN L
Sbjct: 312 YIPGTSFIGALLLLNMNLTSAFNCLANLL 340
>SPAC12G12.04 |hsp60|hsp60|mitochondrial heat shock protein
Hsp60|Schizosaccharomyces pombe|chr 1|||Manual
Length = 582
Score = 26.2 bits (55), Expect = 5.5
Identities = 23/78 (29%), Positives = 37/78 (47%), Gaps = 3/78 (3%)
Frame = -2
Query: 361 LRDARTLASPNIVILLVGNKKDLEDSREVTFTEASQFALENELMFLETSAKTGENV-EEA 185
LR LA N+V L NK+D+ S E+ ++ + + + E AK E V +E
Sbjct: 147 LRRGIQLAVDNVVEFLQANKRDITTSEEI--SQVATISANGDTHIGELLAKAMERVGKEG 204
Query: 184 FL--KCSKTILAKIETGE 137
+ K +TI ++E E
Sbjct: 205 VITVKEGRTISDELEVTE 222
>SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase
Abc2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1463
Score = 26.2 bits (55), Expect = 5.5
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = -2
Query: 631 VIGSAGTGKSSLLNNFIGNKFK 566
++G G GKSSLL +GN K
Sbjct: 614 IVGKVGMGKSSLLEACLGNMQK 635
>SPBC1271.15c |||translation initiation factor
IF-2Mt|Schizosaccharomyces pombe|chr 2|||Manual
Length = 686
Score = 26.2 bits (55), Expect = 5.5
Identities = 38/167 (22%), Positives = 68/167 (40%), Gaps = 6/167 (3%)
Frame = -2
Query: 631 VIGSAGTGKSSLLNNFIGNKFKEDRCHTIGVEFGSKIVNIGGKSTKLQIWDTAGQERFRS 452
++G GK++LL+ F + I + G+ V S + DT G F +
Sbjct: 176 LMGHVDHGKTTLLDAFRKSTIASTEHGGITQKIGAFTVPFDKGSKFITFLDTPGHMAFEA 235
Query: 451 VTRSYYRGAAGALLVYDITSRDSFNALANWLRDARTLASPNIVILLVGNKKD-----LED 287
+ + RGA A +V + + D + + + S ++ +++ K D +
Sbjct: 236 MRK---RGANIADIVVLVVAGDD-GVKPQTVEAIKHIQSADVPVVVALTKSDRPGTPIHK 291
Query: 286 SREVTFTEASQF-ALENELMFLETSAKTGENVEEAFLKCSKTILAKI 149
E Q AL E + SAKTG+ + E L+ + LA+I
Sbjct: 292 IYEQLLNNGIQVEALGGETQIIPISAKTGKGIPE--LEAAILTLAEI 336
>SPCC553.12c ||SPCC794.13|conserved fungal
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 521
Score = 25.8 bits (54), Expect = 7.3
Identities = 8/13 (61%), Positives = 12/13 (92%)
Frame = -1
Query: 479 HSWTGTVSICDQI 441
+SWTGTVS+C+ +
Sbjct: 303 YSWTGTVSLCNLV 315
>SPBC16H5.08c |||ribosome biogenesis ATPase, Arb family
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 618
Score = 25.4 bits (53), Expect = 9.7
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = -2
Query: 631 VIGSAGTGKSSLLNNFIG 578
++G GTGKS+LLN G
Sbjct: 421 IVGKNGTGKSTLLNLITG 438
>SPBC887.14c |pfh1|pif1|pif1 helicase homolog
Pfh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 805
Score = 25.4 bits (53), Expect = 9.7
Identities = 19/45 (42%), Positives = 24/45 (53%), Gaps = 5/45 (11%)
Frame = -2
Query: 625 GSAGTGKSSLLNNFI---GNKFKE--DRCHTIGVEFGSKIVNIGG 506
GSAGTGKS LL I +K+++ DR + G NIGG
Sbjct: 332 GSAGTGKSVLLRKIIEVLKSKYRKQSDRV-AVTASTGLAACNIGG 375
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,123,104
Number of Sequences: 5004
Number of extensions: 63021
Number of successful extensions: 270
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 238
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 249
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 396433620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -