Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc11c05
(812 letters)
Database: mosquito
2352 sequences; 563,979 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
EF127647-1|ABL74413.1| 213|Anopheles gambiae Rab5 protein. 156 9e-40
AJ438610-3|CAD27475.1| 190|Anopheles gambiae putative RHO small... 58 4e-10
U29486-1|AAC46995.1| 695|Anopheles gambiae ATP-binding-cassette... 26 1.6
U29485-1|AAC46994.1| 695|Anopheles gambiae ATP-binding-cassette... 26 1.6
U29484-1|AAC47423.1| 673|Anopheles gambiae ATP-binding-cassette... 26 1.6
AY553322-1|AAT36323.1| 426|Anopheles gambiae G-protein coupled ... 24 6.4
AY056833-1|AAL23627.1| 1253|Anopheles gambiae chitin synthase pr... 23 8.5
AJ439060-5|CAD27756.1| 245|Anopheles gambiae putative deoxynucl... 23 8.5
AF488801-1|AAO49462.1| 246|Anopheles gambiae multisubstrate deo... 23 8.5
>EF127647-1|ABL74413.1| 213|Anopheles gambiae Rab5 protein.
Length = 213
Score = 156 bits (378), Expect = 9e-40
Identities = 75/161 (46%), Positives = 106/161 (65%)
Frame = -2
Query: 643 FKFLVIGSAGTGKSSLLNNFIGNKFKEDRCHTIGVEFGSKIVNIGGKSTKLQIWDTAGQE 464
FK +++G + GKSSL+ F+ +F E + TIG F ++ + I + K +IWDTAGQE
Sbjct: 25 FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTLCIDDTTVKFEIWDTAGQE 84
Query: 463 RFRSVTRSYYRGAAGALLVYDITSRDSFNALANWLRDARTLASPNIVILLVGNKKDLEDS 284
R+ S+ YYRGA A++VYDI + DSF W+++ + ASPNIVI L GNK DL +S
Sbjct: 85 RYHSLAPMYYRGAQAAIVVYDIQNSDSFARAKTWVKELQRQASPNIVIALAGNKADLANS 144
Query: 283 REVTFTEASQFALENELMFLETSAKTGENVEEAFLKCSKTI 161
R V + EA Q+A +N L+F+ETSAKT NV + FL +K +
Sbjct: 145 RVVDYEEAKQYADDNRLLFMETSAKTAVNVNDIFLAIAKKL 185
>AJ438610-3|CAD27475.1| 190|Anopheles gambiae putative RHO small
GTPase protein.
Length = 190
Score = 57.6 bits (133), Expect = 4e-10
Identities = 38/130 (29%), Positives = 61/130 (46%), Gaps = 1/130 (0%)
Frame = -2
Query: 640 KFLVIGSAGTGKSSLLNNFIGNKFKEDRCHTIGVEFGSKIVNIGGKSTKLQIWDTAGQER 461
K +V+G GK+ +L ++ + F + T + + +V + G L +WDTAGQE
Sbjct: 8 KCVVVGDGTVGKTCMLISYTTDSFPGEYVPTSFDNYSAPMV-VDGVQVSLGLWDTAGQED 66
Query: 460 FRSVTRSYYRGAAGALLVYDITSRDSF-NALANWLRDARTLASPNIVILLVGNKKDLEDS 284
+ + Y L+ Y + S SF N + W + + P+ I+LVG K DL +
Sbjct: 67 YDRLRPLSYPQTDVFLICYSVASPSSFENVTSKWYPEIKH-HCPDAPIILVGTKIDLRED 125
Query: 283 REVTFTEASQ 254
RE A Q
Sbjct: 126 RETISLLADQ 135
>U29486-1|AAC46995.1| 695|Anopheles gambiae ATP-binding-cassette
protein protein.
Length = 695
Score = 25.8 bits (54), Expect = 1.6
Identities = 14/29 (48%), Positives = 21/29 (72%)
Frame = -2
Query: 676 VTNMSESYEYLFKFLVIGSAGTGKSSLLN 590
VT +++S E L V+GS+G GK++LLN
Sbjct: 119 VTGVAKSGELL---AVMGSSGAGKTTLLN 144
>U29485-1|AAC46994.1| 695|Anopheles gambiae ATP-binding-cassette
protein protein.
Length = 695
Score = 25.8 bits (54), Expect = 1.6
Identities = 14/29 (48%), Positives = 21/29 (72%)
Frame = -2
Query: 676 VTNMSESYEYLFKFLVIGSAGTGKSSLLN 590
VT +++S E L V+GS+G GK++LLN
Sbjct: 119 VTGVAKSGELL---AVMGSSGAGKTTLLN 144
>U29484-1|AAC47423.1| 673|Anopheles gambiae ATP-binding-cassette
protein protein.
Length = 673
Score = 25.8 bits (54), Expect = 1.6
Identities = 14/29 (48%), Positives = 21/29 (72%)
Frame = -2
Query: 676 VTNMSESYEYLFKFLVIGSAGTGKSSLLN 590
VT +++S E L V+GS+G GK++LLN
Sbjct: 97 VTGVAKSGELL---AVMGSSGAGKTTLLN 122
>AY553322-1|AAT36323.1| 426|Anopheles gambiae G-protein coupled
receptor 4 protein.
Length = 426
Score = 23.8 bits (49), Expect = 6.4
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +3
Query: 60 GLFGAVNLFVVFVPY*IPEPILSGS 134
GL A NLF V Y +P I+SG+
Sbjct: 238 GLETAYNLFCVIAMYFLPLMIISGA 262
>AY056833-1|AAL23627.1| 1253|Anopheles gambiae chitin synthase
protein.
Length = 1253
Score = 23.4 bits (48), Expect = 8.5
Identities = 8/25 (32%), Positives = 16/25 (64%)
Frame = -1
Query: 137 IGS*KDRFWYSIWHKYYKEIDCSKE 63
I + +++FW + KY K +D S++
Sbjct: 884 ISASEEQFWIELIEKYLKPLDLSEK 908
>AJ439060-5|CAD27756.1| 245|Anopheles gambiae putative
deoxynucleoside kinase protein.
Length = 245
Score = 23.4 bits (48), Expect = 8.5
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = -2
Query: 643 FKFLVIGSAGTGKSSLLNNF 584
F V G+ G+GK++ LN+F
Sbjct: 17 FTVFVEGNIGSGKTTFLNHF 36
>AF488801-1|AAO49462.1| 246|Anopheles gambiae multisubstrate
deoxyribonucleoside kinaseprotein.
Length = 246
Score = 23.4 bits (48), Expect = 8.5
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = -2
Query: 643 FKFLVIGSAGTGKSSLLNNF 584
F V G+ G+GK++ LN+F
Sbjct: 17 FTVFVEGNIGSGKTTFLNHF 36
Database: mosquito
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 563,979
Number of sequences in database: 2352
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 765,945
Number of Sequences: 2352
Number of extensions: 14273
Number of successful extensions: 24
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 86071221
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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