Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc11c05
         (812 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    24   1.5  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    24   1.9  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    24   1.9  
AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    23   2.5  
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    23   2.5  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    22   7.8  

>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 24.2 bits (50), Expect = 1.5
 Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
 Frame = -2

Query: 334 PNIVILLVGNKKDLEDSREVTFTEASQFALENELMFLE-TSAKTGENVEEAF 182
           PN+  L +   KD++ + E+TF    Q +  +E   ++  S K   NV   F
Sbjct: 598 PNLPKLALFATKDIKQNEEITFDYMCQSSKNSENSIMQRASMKENLNVYPEF 649


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.8 bits (49), Expect = 1.9
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +3

Query: 504  LPPMFTILEPNSTPIV 551
            +PP  T L PNST +V
Sbjct: 1501 IPPAATFLSPNSTTLV 1516


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.8 bits (49), Expect = 1.9
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +3

Query: 504  LPPMFTILEPNSTPIV 551
            +PP  T L PNST +V
Sbjct: 1497 IPPAATFLSPNSTTLV 1512


>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +2

Query: 53  PSWPLWSSQSLCSIC 97
           P+ PL  S+ LCSIC
Sbjct: 99  PNHPLSGSKHLCSIC 113


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +2

Query: 53  PSWPLWSSQSLCSIC 97
           P+ PL  S+ LCSIC
Sbjct: 99  PNHPLSGSKHLCSIC 113


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 21.8 bits (44), Expect = 7.8
 Identities = 10/35 (28%), Positives = 21/35 (60%)
 Frame = -2

Query: 292 EDSREVTFTEASQFALENELMFLETSAKTGENVEE 188
           ++S    F++ ++  LE   + + TS K+G N+E+
Sbjct: 419 DNSINAGFSKIAENLLEKNWLPVHTSYKSGLNLEQ 453


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 207,853
Number of Sequences: 438
Number of extensions: 4084
Number of successful extensions: 13
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25853301
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)