Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc11c04
         (746 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ013245-1|AAY34441.1|  487|Anopheles gambiae adrenodoxin reduct...    29   0.20 
AY705404-1|AAU12513.1|  406|Anopheles gambiae nicotinic acetylch...    24   5.7  
AY028784-1|AAK32958.2|  499|Anopheles gambiae cytochrome P450 pr...    24   5.7  
AJ535203-1|CAD59403.1| 1229|Anopheles gambiae SMC1 protein protein.    24   5.7  

>DQ013245-1|AAY34441.1|  487|Anopheles gambiae adrenodoxin reductase
           protein.
          Length = 487

 Score = 28.7 bits (61), Expect = 0.20
 Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 3/72 (4%)
 Frame = -2

Query: 424 PTNINETILK--ICATCGLNGNSEFEALDTKFTVLKACYEETGHSV-PNSLLHTIETVDD 254
           PT   ETI    +C + G    S    ++  F   K C    G  V   +L  + +T+DD
Sbjct: 326 PTEQRETIATDLVCRSIGYRAVSVDNHIN--FDARKGCVNNAGGRVLKRNLTGSDQTIDD 383

Query: 253 LTEFYKTPVYTT 218
           + + Y+T +Y +
Sbjct: 384 IEDKYETGLYAS 395


>AY705404-1|AAU12513.1|  406|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 9 protein.
          Length = 406

 Score = 23.8 bits (49), Expect = 5.7
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = -1

Query: 581 QECIITLTSWKFPGHI 534
           Q+CI+ + SW F G++
Sbjct: 174 QKCIVKIGSWTFDGYM 189


>AY028784-1|AAK32958.2|  499|Anopheles gambiae cytochrome P450
           protein.
          Length = 499

 Score = 23.8 bits (49), Expect = 5.7
 Identities = 8/22 (36%), Positives = 11/22 (50%)
 Frame = +2

Query: 287 IRHTMACFFITSFENCKFCVQC 352
           +R  MACF      +C F + C
Sbjct: 173 VRQLMACFLTDVIGSCAFGIDC 194


>AJ535203-1|CAD59403.1| 1229|Anopheles gambiae SMC1 protein protein.
          Length = 1229

 Score = 23.8 bits (49), Expect = 5.7
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = -2

Query: 538 TSIRQAQKKYPKADKKVQAAAESLAA 461
           T + Q +++  KA ++VQA A+ LAA
Sbjct: 892 TLVDQMEEEMAKARREVQALAKELAA 917


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 820,074
Number of Sequences: 2352
Number of extensions: 18026
Number of successful extensions: 20
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 76923555
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)