Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc11c04
(746 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL353621-1|CAI14610.1| 158|Homo sapiens mitochondrial ribosomal... 54 4e-07
AK025643-1|BAB15200.1| 158|Homo sapiens protein ( Homo sapiens ... 54 4e-07
AK000500-1|BAA91207.1| 158|Homo sapiens protein ( Homo sapiens ... 54 4e-07
BC032008-1|AAH32008.1| 158|Homo sapiens mitochondrial ribosomal... 54 5e-07
BC126216-1|AAI26217.1| 1116|Homo sapiens chromosome 14 open read... 31 5.8
BC126214-1|AAI26215.1| 1116|Homo sapiens chromosome 14 open read... 31 5.8
AK024360-1|BAB14896.1| 638|Homo sapiens protein ( Homo sapiens ... 31 5.8
>AL353621-1|CAI14610.1| 158|Homo sapiens mitochondrial ribosomal
protein L50 protein.
Length = 158
Score = 54.4 bits (125), Expect = 4e-07
Identities = 38/131 (29%), Positives = 64/131 (48%), Gaps = 6/131 (4%)
Frame = -2
Query: 529 RQAQKKYPKADKKVQAAAESLAARGFLRPTKSWDPPTNIN---ETILKICATCGLNGNSE 359
R ++K P + V+ E + LR ++++ PP ++ E+ +K L N +
Sbjct: 29 RFRKEKEPVVVETVEEKKEPILVCPPLR-SRAYTPPEDLQSRLESYVKEVFGSSLPSNWQ 87
Query: 358 FEALDT---KFTVLKACYEETGHSVPNSLLHTIETVDDLTEFYKTPVYTTTPFDALKLMD 188
+L+ KF +L ++ GH VPNS LH + V D+ +FY P+ + FD L +
Sbjct: 88 DISLEDSRLKFNLLAHLADDLGHVVPNSRLHQMCRVRDVLDFYNVPIQDRSKFDELSASN 147
Query: 187 LPKNLHVQKDY 155
LP NL + Y
Sbjct: 148 LPPNLKITWSY 158
>AK025643-1|BAB15200.1| 158|Homo sapiens protein ( Homo sapiens
cDNA: FLJ21990 fis, clone HEP06386. ).
Length = 158
Score = 54.4 bits (125), Expect = 4e-07
Identities = 38/131 (29%), Positives = 64/131 (48%), Gaps = 6/131 (4%)
Frame = -2
Query: 529 RQAQKKYPKADKKVQAAAESLAARGFLRPTKSWDPPTNIN---ETILKICATCGLNGNSE 359
R ++K P + V+ E + LR ++++ PP ++ E+ +K L N +
Sbjct: 29 RFRKEKEPVVVETVEEKKEPILVCPPLR-SRAYTPPEDLQSRLESYVKEVFGSSLPSNWQ 87
Query: 358 FEALDT---KFTVLKACYEETGHSVPNSLLHTIETVDDLTEFYKTPVYTTTPFDALKLMD 188
+L+ KF +L ++ GH VPNS LH + V D+ +FY P+ + FD L +
Sbjct: 88 DISLEDSRLKFNLLAHLADDLGHVVPNSRLHQMCRVRDVLDFYNVPIQDRSKFDELSASN 147
Query: 187 LPKNLHVQKDY 155
LP NL + Y
Sbjct: 148 LPPNLKITWSY 158
>AK000500-1|BAA91207.1| 158|Homo sapiens protein ( Homo sapiens
cDNA FLJ20493 fis, clone KAT08512. ).
Length = 158
Score = 54.4 bits (125), Expect = 4e-07
Identities = 38/131 (29%), Positives = 64/131 (48%), Gaps = 6/131 (4%)
Frame = -2
Query: 529 RQAQKKYPKADKKVQAAAESLAARGFLRPTKSWDPPTNIN---ETILKICATCGLNGNSE 359
R ++K P + V+ E + LR ++++ PP ++ E+ +K L N +
Sbjct: 29 RFRKEKEPVVVETVEEKKEPILVCPPLR-SRAYTPPEDLQSRLESYVKEVFGSSLPSNWQ 87
Query: 358 FEALDT---KFTVLKACYEETGHSVPNSLLHTIETVDDLTEFYKTPVYTTTPFDALKLMD 188
+L+ KF +L ++ GH VPNS LH + V D+ +FY P+ + FD L +
Sbjct: 88 DISLEDSRLKFNLLAHLADDLGHVVPNSRLHQMCRVRDVLDFYNVPIQDRSKFDELSASN 147
Query: 187 LPKNLHVQKDY 155
LP NL + Y
Sbjct: 148 LPPNLKITWSY 158
>BC032008-1|AAH32008.1| 158|Homo sapiens mitochondrial ribosomal
protein L50 protein.
Length = 158
Score = 54.0 bits (124), Expect = 5e-07
Identities = 38/131 (29%), Positives = 64/131 (48%), Gaps = 6/131 (4%)
Frame = -2
Query: 529 RQAQKKYPKADKKVQAAAESLAARGFLRPTKSWDPPTNIN---ETILKICATCGLNGNSE 359
R ++K P + V+ E + LR ++++ PP ++ E+ +K L N +
Sbjct: 29 RFRKEKEPVVVETVEEKKEPILVCPPLR-SRAYTPPEDLQSRLESYVKEVFGSSLPSNWQ 87
Query: 358 FEALDT---KFTVLKACYEETGHSVPNSLLHTIETVDDLTEFYKTPVYTTTPFDALKLMD 188
+L+ KF +L ++ GH VPNS LH + V D+ +FY P+ + FD L +
Sbjct: 88 DISLEDSRLKFNLLAHLADDLGHVVPNSRLHQMCRVRDVFDFYNVPIQDRSKFDELSASN 147
Query: 187 LPKNLHVQKDY 155
LP NL + Y
Sbjct: 148 LPPNLKITWSY 158
>BC126216-1|AAI26217.1| 1116|Homo sapiens chromosome 14 open reading
frame 161 protein.
Length = 1116
Score = 30.7 bits (66), Expect = 5.8
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Frame = -3
Query: 564 PYVVEVSRSHLSD--KLKKNIPKQIKRFKQRQNP*RQEASYVPPSHGIHLQTS 412
PY+V V+ ++ KLK +P+ IKR KQ P A Y P + ++ S
Sbjct: 969 PYLVTVTEVNMRHNWKLKHTVPENIKRMKQLVEPILGAAVYNPSGLNLSIKGS 1021
>BC126214-1|AAI26215.1| 1116|Homo sapiens chromosome 14 open reading
frame 161 protein.
Length = 1116
Score = 30.7 bits (66), Expect = 5.8
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Frame = -3
Query: 564 PYVVEVSRSHLSD--KLKKNIPKQIKRFKQRQNP*RQEASYVPPSHGIHLQTS 412
PY+V V+ ++ KLK +P+ IKR KQ P A Y P + ++ S
Sbjct: 969 PYLVTVTEVNMRHNWKLKHTVPENIKRMKQLVEPILGAAVYNPSGLNLSIKGS 1021
>AK024360-1|BAB14896.1| 638|Homo sapiens protein ( Homo sapiens
cDNA FLJ14298 fis, clone PLACE1009935. ).
Length = 638
Score = 30.7 bits (66), Expect = 5.8
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Frame = -3
Query: 564 PYVVEVSRSHLSD--KLKKNIPKQIKRFKQRQNP*RQEASYVPPSHGIHLQTS 412
PY+V V+ ++ KLK +P+ IKR KQ P A Y P + ++ S
Sbjct: 491 PYLVTVTEVNMRHNWKLKHTVPENIKRMKQLVEPILGAAVYNPSGLNLSIKGS 543
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 108,746,025
Number of Sequences: 237096
Number of extensions: 2287234
Number of successful extensions: 3703
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3571
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3703
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8959138240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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