Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc11c04
         (746 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68318-1|CAA92691.1|  285|Caenorhabditis elegans Hypothetical pr...    79   4e-15
U23519-12|AAK31505.3| 1021|Caenorhabditis elegans Hypothetical p...    32   0.50 
Z92832-6|CAB07375.2|  572|Caenorhabditis elegans Hypothetical pr...    31   0.66 
AC024880-2|AAF60914.4|  665|Caenorhabditis elegans Hypothetical ...    29   3.5  
AC024880-1|AAR12985.1|  634|Caenorhabditis elegans Hypothetical ...    29   3.5  
Z35663-14|CAA84733.1|  805|Caenorhabditis elegans Hypothetical p...    28   6.1  
U53154-2|AAC25856.1|  358|Caenorhabditis elegans Hypothetical pr...    28   6.1  
AL031632-1|CAA21004.1|  248|Caenorhabditis elegans Hypothetical ...    28   8.1  

>Z68318-1|CAA92691.1|  285|Caenorhabditis elegans Hypothetical
           protein T21B10.1 protein.
          Length = 285

 Score = 78.6 bits (185), Expect = 4e-15
 Identities = 55/201 (27%), Positives = 97/201 (48%), Gaps = 14/201 (6%)
 Frame = -2

Query: 589 EMFRNVLLPLR-RGSFQVTSIRQAQKKYPKADKKVQAA-AESLAARGFLRPTKSWDPPTN 416
           E  R  L  +R R S QVT+   +  ++      +     +++ ARGFL+ T+++ P  +
Sbjct: 38  ESLRKTLPSIRARESTQVTASADSVTEFDDDLLTMSRIDTDAIRARGFLKYTQNYVPGVD 97

Query: 415 INETILKICATCGLNGNSEFEALD----------TKFTVLKACYEETGHSVPNSLLHTIE 266
           +   +L+  ++C  +   + E +D           KF +L    +   H   N  L  +E
Sbjct: 98  VKNQVLEAASSCLRSAGVKSENVDQYKFVEGDNSVKFELLNRLGKSIEHWPTNGKLLHLE 157

Query: 265 TVDDLTEFYKTPVYTTTPF-DALKLMDLPKNLHVQKDYVRFHP-DTDTLFNGVSAFPKSS 92
           TV D+ EFY+TPV   T + +  +  + PKN+ + +   RFHP DT     G++AFP S 
Sbjct: 158 TVADVVEFYQTPVKNVTKYTEMARDENKPKNVSIMEHAARFHPEDTHMYHGGITAFPGSG 217

Query: 91  TIVTGLKARKKYEGYSAKRKW 29
             V  L+ ++    +  K++W
Sbjct: 218 GEVLSLRQKRLLRQFQPKKEW 238


>U23519-12|AAK31505.3| 1021|Caenorhabditis elegans Hypothetical
           protein F26G1.1 protein.
          Length = 1021

 Score = 31.9 bits (69), Expect = 0.50
 Identities = 17/51 (33%), Positives = 27/51 (52%)
 Frame = -2

Query: 394 ICATCGLNGNSEFEALDTKFTVLKACYEETGHSVPNSLLHTIETVDDLTEF 242
           +C++  L     F  LD    ++  C E+ G    NSL+H IET+ + T+F
Sbjct: 715 VCSSLSLIDFQAFTNLDQCIELIVRCREDMGLR-QNSLIHIIETLFNFTQF 764


>Z92832-6|CAB07375.2|  572|Caenorhabditis elegans Hypothetical
           protein F31D4.7 protein.
          Length = 572

 Score = 31.5 bits (68), Expect = 0.66
 Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
 Frame = -2

Query: 445 PTKSWDPPTNI--NETILKICATCGLNGNSEFEALDT 341
           PTKS D  TN+   ET L++C   G N N EF   ++
Sbjct: 513 PTKSPDEVTNLVEYETALRVCEQIGDNNNEEFSEAES 549


>AC024880-2|AAF60914.4|  665|Caenorhabditis elegans Hypothetical
           protein Y97E10AR.2a protein.
          Length = 665

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
 Frame = -2

Query: 262 VDDLTEFYKTPVYTTT---PFDALKLMDLPKNLHVQKDYVRFHPDTDTLFNGVSAFPKSS 92
           V++  E  K+P  +T+   P  A  + D PK  +V ++Y R   D  T+ +    F K +
Sbjct: 259 VEEYEETTKSPTVSTSTSEPMAAAPITDAPKTENVSRNYTRIIWDRRTVRSSSEKFSKFA 318

Query: 91  TI 86
            I
Sbjct: 319 II 320


>AC024880-1|AAR12985.1|  634|Caenorhabditis elegans Hypothetical
           protein Y97E10AR.2b protein.
          Length = 634

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
 Frame = -2

Query: 262 VDDLTEFYKTPVYTTT---PFDALKLMDLPKNLHVQKDYVRFHPDTDTLFNGVSAFPKSS 92
           V++  E  K+P  +T+   P  A  + D PK  +V ++Y R   D  T+ +    F K +
Sbjct: 209 VEEYEETTKSPTVSTSTSEPMAAAPITDAPKTENVSRNYTRIIWDRRTVRSSSEKFSKFA 268

Query: 91  TI 86
            I
Sbjct: 269 II 270


>Z35663-14|CAA84733.1|  805|Caenorhabditis elegans Hypothetical
           protein T04A8.16 protein.
          Length = 805

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 23/92 (25%), Positives = 37/92 (40%), Gaps = 3/92 (3%)
 Frame = -2

Query: 613 LVDTKKN*EMFR-NVLLPLRRGSFQVTSIRQAQKKYPKADKKVQAAAESLAARG--FLRP 443
           LV  KK   +FR NV+  + R  F  ++I+  Q++YP     +    E L  +   F   
Sbjct: 42  LVQEKKCLPIFRKNVMECINRAEFLKSNIQNLQQQYPPTTDDIAHNVEYLMVKAAVFQNY 101

Query: 442 TKSWDPPTNINETILKICATCGLNGNSEFEAL 347
               D    + E +++ C     N     E L
Sbjct: 102 ENQVDEARQVYENVVEQCLGASRNRTLPQETL 133


>U53154-2|AAC25856.1|  358|Caenorhabditis elegans Hypothetical
           protein C33G8.12 protein.
          Length = 358

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 9/24 (37%), Positives = 17/24 (70%)
 Frame = -2

Query: 697 QKSKYRLWLCCSRKITLLKNYIKI 626
           +K  Y+ W+C S K+ + +NY++I
Sbjct: 329 EKLHYQFWMCGSHKMIMDENYVQI 352


>AL031632-1|CAA21004.1|  248|Caenorhabditis elegans Hypothetical
           protein Y32B12B.1 protein.
          Length = 248

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = +2

Query: 473 FCRCLNLFICFGIFFLSLSDRCDLETSTT 559
           FCRCL ++ C  +F + L    +LETS T
Sbjct: 14  FCRCLCVYRCLWLFLIMLK---NLETSKT 39


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,962,158
Number of Sequences: 27780
Number of extensions: 392933
Number of successful extensions: 1019
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 995
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1016
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1766990064
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)