Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc11c03
         (869 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase Abc4|...    31   0.21 
SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual      28   2.0  
SPAC1F7.08 |fio1||iron transport multicopper oxidase Fio1|Schizo...    27   3.5  
SPBC18A7.01 ||SPBC4F6.19c|X-Pro dipeptidase |Schizosaccharomyces...    27   3.5  
SPBC15D4.09c |||cystathionine gamma-synthase |Schizosaccharomyce...    26   6.1  
SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces ...    26   6.1  
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb...    26   8.0  

>SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase
            Abc4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1469

 Score = 31.1 bits (67), Expect = 0.21
 Identities = 12/42 (28%), Positives = 23/42 (54%)
 Frame = -3

Query: 528  IWFYVACVVSICFGLCYIDYLIPIHAIPTIMVLYVTVLFGLM 403
            ++F + C +S+  G+  +   +PI  IP ++V      FGL+
Sbjct: 1012 LFFSINCFLSVAGGILSVSSAMPIFMIPAVIVCLAGYYFGLL 1053


>SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1489

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 21/70 (30%), Positives = 39/70 (55%), Gaps = 1/70 (1%)
 Frame = +1

Query: 43  DRMIHRLKKSSVMRCQHSDKNNKVDNEKDFINDHR*FGLVTVFYFFVTPLHLFNAFPR-I 219
           D++I ++  S+ ++ +HSD  NK     DFI+     GL  +F+F +T ++     P+ I
Sbjct: 85  DKLI-KIFYSNELQFRHSDNINKF---LDFIHG---IGLPEIFHFELTDIYEGKNLPKVI 137

Query: 220 HCVTRVVIFL 249
           +C+  +  FL
Sbjct: 138 YCIHALSYFL 147


>SPAC1F7.08 |fio1||iron transport multicopper oxidase
           Fio1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 622

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 14/34 (41%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
 Frame = -3

Query: 540 TMSRIWFYVACVVSICFGL-CYIDYLIPIHAIPT 442
           T   I    ACV+S C G+   I Y   IH +PT
Sbjct: 551 TSKAIGTMAACVISACIGMGSIIFYGASIHPVPT 584


>SPBC18A7.01 ||SPBC4F6.19c|X-Pro dipeptidase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 451

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 18/65 (27%), Positives = 29/65 (44%)
 Frame = -3

Query: 825 ILDETDARFEMFSDIDTVIHNEWQIMTEQVTLDSAMWNEIIDLINSEEVLTTHLSDKMII 646
           ++D     F   SD    +    Q MTE++     +WN + D   +   + +HLS+    
Sbjct: 303 LMDVGTTLFGYHSDCTRTVLPHGQKMTERM---EKLWNLVYDAQTAGIQMLSHLSNTSCA 359

Query: 645 TVDLA 631
            VDLA
Sbjct: 360 EVDLA 364


>SPBC15D4.09c |||cystathionine gamma-synthase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 610

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = -3

Query: 501 SICFGLCYIDYL 466
           S+CFG CY+D L
Sbjct: 323 SVCFGFCYVDTL 334


>SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1427

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 14/59 (23%), Positives = 27/59 (45%)
 Frame = -3

Query: 585  VLNTFVLISFWTKPLTMSRIWFYVACVVSICFGLCYIDYLIPIHAIPTIMVLYVTVLFG 409
            +LN F    + T  L  + +   + CV++I   +  +  ++PI  +P   V  +  L G
Sbjct: 959  ILNRFSKDMYATDNLLWASLEGMLLCVMAILITMLNVTLVMPIFMVPAAFVSLLVYLHG 1017


>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 620

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 11/34 (32%), Positives = 21/34 (61%)
 Frame = -3

Query: 276 KAANGDYSVQEDDDSSYTVDSREGVEEMERSDKE 175
           ++ANGD + Q+D   S   +  +G+EE E  +++
Sbjct: 19  ESANGD-TKQDDSKKSQVEEEEDGIEESELGEEK 51


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,379,188
Number of Sequences: 5004
Number of extensions: 71220
Number of successful extensions: 213
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 203
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 213
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 434475230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)