Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc11c03
         (869 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_07_0053 - 27364449-27365021,27365117-27365352,27365993-27367880     32   0.69 
04_03_1034 - 21865633-21865811,21865838-21865860,21866345-218664...    31   0.91 
11_01_0421 + 3236798-3237144,3237356-3237441,3237741-3237895,323...    29   6.4  
03_02_0992 + 13049871-13050449                                         29   6.4  
04_04_0461 + 25390552-25391904                                         28   8.5  

>05_07_0053 - 27364449-27365021,27365117-27365352,27365993-27367880
          Length = 898

 Score = 31.9 bits (69), Expect = 0.69
 Identities = 15/33 (45%), Positives = 20/33 (60%)
 Frame = -3

Query: 852 EAHENIKIEILDETDARFEMFSDIDTVIHNEWQ 754
           E  E I + +LD+  A F+MF   D V+H EWQ
Sbjct: 19  EEEEEIHLRLLDQLFAPFDMFEGGDPVLH-EWQ 50


>04_03_1034 -
           21865633-21865811,21865838-21865860,21866345-21866433,
           21872484-21872894,21872968-21873284,21873389-21873467,
           21873539-21873903,21874484-21874656,21874824-21874913,
           21875797-21875862,21876615-21876661
          Length = 612

 Score = 31.5 bits (68), Expect = 0.91
 Identities = 18/67 (26%), Positives = 36/67 (53%), Gaps = 4/67 (5%)
 Frame = +2

Query: 575 VFRTNIGT*NTRLYKSGFL----AKSTVMIILSLKWVVRTSSLLMRSMISFHIAESRVTC 742
           + +  IG+ NT++Y+ G++    A++   ++ +   V+R  +   RSM+  +I ES    
Sbjct: 164 ILKVIIGSGNTKMYEVGWIGQDNAETNTSVLQADDLVIRKKARASRSMLKIYIRESTSQN 223

Query: 743 SVMICHS 763
           S  I H+
Sbjct: 224 SPWIIHA 230


>11_01_0421 +
           3236798-3237144,3237356-3237441,3237741-3237895,
           3237971-3238035,3238180-3238363,3238785-3239048,
           3239141-3239224,3239727-3239984,3240214-3240472,
           3240550-3240755,3240896-3240946,3241041-3241337
          Length = 751

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
 Frame = -2

Query: 478 YRLFNTDSCDTYHNGTVRDGLVWT---NDCCDGQRAPNIELR*GVGEVVSNEASPDLRRR 308
           Y     DSC    +   + G V+T   N+C D  RAP+ E R  +   VS + S   RRR
Sbjct: 659 YHSARIDSCPASSSDNSKKGQVFTEMLNNCLDQLRAPSSETRVFMRCDVSFDQSSHGRRR 718

Query: 307 T 305
           +
Sbjct: 719 S 719


>03_02_0992 + 13049871-13050449
          Length = 192

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = +3

Query: 87  PTFRQKQ*GRQRKGFYQRPPLVRPCHR 167
           PT      G +R+G  +RPPL R CHR
Sbjct: 17  PTTTLPSTGFRREGGLRRPPLCRLCHR 43


>04_04_0461 + 25390552-25391904
          Length = 450

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 22/61 (36%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
 Frame = -3

Query: 372 SNFGEALGKSSAMKQVLTCGVVRAVFCLPSMKKAANGDYSVQEDDDSSYTV---DSREGV 202
           S++ EA G +      LT   V  +F L  +    NG  SV  DDD  YTV     ++GV
Sbjct: 96  SDYAEATGGAFCP---LTSKYVLPLFRLKDIAPDGNGKGSVTIDDDDQYTVLFSSCQDGV 152

Query: 201 E 199
           E
Sbjct: 153 E 153


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,126,193
Number of Sequences: 37544
Number of extensions: 470881
Number of successful extensions: 1258
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1220
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1258
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2444475072
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)