Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc11c03
         (869 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY939827-1|AAY18208.1|  680|Anopheles gambiae CTCF-like protein ...    25   2.3  
AY805323-1|AAV66543.1|  459|Anopheles gambiae beta subunit-GABA-...    25   2.3  
CR954257-12|CAJ14163.1| 1645|Anopheles gambiae putative cytoskel...    25   4.0  
AY645023-1|AAT92559.1|   99|Anopheles gambiae wingless protein.        24   5.2  

>AY939827-1|AAY18208.1|  680|Anopheles gambiae CTCF-like protein
           protein.
          Length = 680

 Score = 25.4 bits (53), Expect = 2.3
 Identities = 18/59 (30%), Positives = 25/59 (42%)
 Frame = +3

Query: 69  KFSNALPTFRQKQ*GRQRKGFYQRPPLVRPCHRILFLCHSSPSLQRLPANPLCN*SRHL 245
           K      TFRQKQ  ++   +Y  P  V P  +     H  P+ +R P     N  RH+
Sbjct: 384 KCDQCAQTFRQKQLLKRHMNYYHNPDYVAPTPKA--KTHICPTCKR-PFRHKGNLIRHM 439


>AY805323-1|AAV66543.1|  459|Anopheles gambiae beta
           subunit-GABA-A-gated chloride channelprotein.
          Length = 459

 Score = 25.4 bits (53), Expect = 2.3
 Identities = 13/65 (20%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
 Frame = -3

Query: 687 EEVLTTHLSDKMIITVDLAKNPDLYNLVFYVPMLVLNTFVLISFW-TKPLTMSRIWFYVA 511
           +E L T +  ++ ++  L +N   +    Y+P +++     +SFW     T +R+   + 
Sbjct: 201 KEKLATGIYQRLSLSFKLQRNIGYFVFQTYLPSILIVMLSWVSFWINHEATSARVALGIT 260

Query: 510 CVVSI 496
            V+++
Sbjct: 261 TVLTM 265


>CR954257-12|CAJ14163.1| 1645|Anopheles gambiae putative cytoskeletal
            structural protein protein.
          Length = 1645

 Score = 24.6 bits (51), Expect = 4.0
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = -3

Query: 771  IHNEWQIMTEQVTLDSAMWNEIIDLINSEEVLTTHLS 661
            IH +  + TE+ +++  + N I + IN  +V    LS
Sbjct: 895  IHKKLALSTEESSINEILMNSIQEQINYHQVSNIRLS 931


>AY645023-1|AAT92559.1|   99|Anopheles gambiae wingless protein.
          Length = 99

 Score = 24.2 bits (50), Expect = 5.2
 Identities = 11/22 (50%), Positives = 12/22 (54%)
 Frame = +1

Query: 280 HGRQTEDRSYDAAGQDLLHC*R 345
           HGRQ  D S    G DL+ C R
Sbjct: 40  HGRQCNDTSIGVDGCDLMCCGR 61


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 857,054
Number of Sequences: 2352
Number of extensions: 16971
Number of successful extensions: 26
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26
length of database: 563,979
effective HSP length: 64
effective length of database: 413,451
effective search space used: 93026475
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)