Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc11c03
(869 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
S82769-1|AAB39369.1| 467|Homo sapiens GABAA receptor gamma 3 su... 40 0.012
AF269144-1|AAF99698.1| 467|Homo sapiens GABAA receptor gamma 3 ... 40 0.012
AF228458-1|AAF63215.1| 449|Homo sapiens GABAA receptor gamma 3 ... 40 0.012
BC031087-1|AAH31087.1| 465|Homo sapiens gamma-aminobutyric acid... 38 0.062
M34517-1|AAA99887.1| 108|Homo sapiens omega protein protein. 34 0.58
DQ644022-1|ABG35128.1| 456|Homo sapiens 5-HT3 receptor subunit ... 34 0.58
BC101183-1|AAI01184.1| 471|Homo sapiens 5-hydroxytryptamine (se... 34 0.58
BC101182-1|AAI01183.1| 471|Homo sapiens 5-hydroxytryptamine (se... 34 0.58
AY349353-1|AAQ93477.1| 456|Homo sapiens 5-HT3c1 serotonin recep... 34 0.58
AY349352-1|AAQ93476.1| 441|Homo sapiens 5-HT3c1 serotonin recep... 34 0.58
AY159813-1|AAO38167.2| 471|Homo sapiens 5-hydroxytryptamine ser... 34 0.58
AJ318022-1|CAC51026.1| 214|Homo sapiens immunoglobulin lambda-3... 34 0.58
X15376-1|CAA33437.1| 467|Homo sapiens GABA-A receptor gamma 2 s... 34 0.77
BC131799-1|AAI31800.1| 447|Homo sapiens 5-hydroxytryptamine (se... 34 0.77
BC074795-1|AAH74795.1| 467|Homo sapiens gamma-aminobutyric acid... 34 0.77
BC069348-1|AAH69348.1| 467|Homo sapiens gamma-aminobutyric acid... 34 0.77
BC059389-1|AAH59389.1| 475|Homo sapiens gamma-aminobutyric acid... 34 0.77
AF459285-1|AAL66182.1| 447|Homo sapiens 5-hydroxytryptamine rec... 34 0.77
AF165124-1|AAD50273.1| 467|Homo sapiens gamma-aminobutyric acid... 34 0.77
AB065887-1|BAC06104.1| 324|Homo sapiens seven transmembrane hel... 34 0.77
AJ318021-1|CAC50882.1| 215|Homo sapiens immunoglobulin lambda-3... 33 1.8
AF137396-7|AAG41681.1| 326|Homo sapiens HOR5'Beta7 protein. 32 3.1
DQ993202-1|ABJ97707.1| 886|Homo sapiens extended-synaptotagmin ... 30 9.5
BC037292-1|AAH37292.1| 501|Homo sapiens FAM62C protein protein. 30 9.5
>S82769-1|AAB39369.1| 467|Homo sapiens GABAA receptor gamma 3
subunit protein.
Length = 467
Score = 39.9 bits (89), Expect = 0.012
Identities = 27/130 (20%), Positives = 60/130 (46%), Gaps = 3/130 (2%)
Frame = -3
Query: 711 EIIDLINSEEVLTTHLSDKMIITV--DLAKNPDLYNLVFYVPMLVLNTFVLISFW-TKPL 541
+ + L N+ E++TT D +++T+ +L++ + + Y+P ++ +SFW K
Sbjct: 222 DFMGLRNTTEIVTTSAGDYVVMTIYFELSRRMGYFTIQTYIPCILTVVLSWVSFWIKKDA 281
Query: 540 TMSRIWFYVACVVSICFGLCYIDYLIPIHAIPTIMVLYVTVLFGLMTAVMANVLLISNFG 361
T +R + V+++ +P + T M L+VTV F + A + ++ +
Sbjct: 282 TPARTALGITTVLTMTTLSTIARKSLPRVSYVTAMDLFVTVCFLFVFAALMEYATLNYYS 341
Query: 360 EALGKSSAMK 331
++ K
Sbjct: 342 SCRKPTTTKK 351
>AF269144-1|AAF99698.1| 467|Homo sapiens GABAA receptor gamma 3
subunit protein.
Length = 467
Score = 39.9 bits (89), Expect = 0.012
Identities = 27/130 (20%), Positives = 60/130 (46%), Gaps = 3/130 (2%)
Frame = -3
Query: 711 EIIDLINSEEVLTTHLSDKMIITV--DLAKNPDLYNLVFYVPMLVLNTFVLISFW-TKPL 541
+ + L N+ E++TT D +++T+ +L++ + + Y+P ++ +SFW K
Sbjct: 222 DFMGLRNTTEIVTTSAGDYVVMTIYFELSRRMGYFTIQTYIPCILTVVLSWVSFWIKKDA 281
Query: 540 TMSRIWFYVACVVSICFGLCYIDYLIPIHAIPTIMVLYVTVLFGLMTAVMANVLLISNFG 361
T +R + V+++ +P + T M L+VTV F + A + ++ +
Sbjct: 282 TPARTALGITTVLTMTTLSTIARKSLPRVSYVTAMDLFVTVCFLFVFAALMEYATLNYYS 341
Query: 360 EALGKSSAMK 331
++ K
Sbjct: 342 SCRKPTTTKK 351
>AF228458-1|AAF63215.1| 449|Homo sapiens GABAA receptor gamma 3
subunit protein.
Length = 449
Score = 39.9 bits (89), Expect = 0.012
Identities = 27/130 (20%), Positives = 60/130 (46%), Gaps = 3/130 (2%)
Frame = -3
Query: 711 EIIDLINSEEVLTTHLSDKMIITV--DLAKNPDLYNLVFYVPMLVLNTFVLISFW-TKPL 541
+ + L N+ E++TT D +++T+ +L++ + + Y+P ++ +SFW K
Sbjct: 204 DFMGLRNTTEIVTTSAGDYVVMTIYFELSRRMGYFTIQTYIPCILTVVLSWVSFWIKKDA 263
Query: 540 TMSRIWFYVACVVSICFGLCYIDYLIPIHAIPTIMVLYVTVLFGLMTAVMANVLLISNFG 361
T +R + V+++ +P + T M L+VTV F + A + ++ +
Sbjct: 264 TPARTALGITTVLTMTTLSTIARKSLPRVSYVTAMDLFVTVCFLFVFAALMEYATLNYYS 323
Query: 360 EALGKSSAMK 331
++ K
Sbjct: 324 SCRKPTTTKK 333
>BC031087-1|AAH31087.1| 465|Homo sapiens gamma-aminobutyric acid
(GABA) A receptor, gamma 1 protein.
Length = 465
Score = 37.5 bits (83), Expect = 0.062
Identities = 36/164 (21%), Positives = 67/164 (40%), Gaps = 4/164 (2%)
Frame = -3
Query: 705 IDLINSEEVLTTHLSDKMIITV--DLAKNPDLYNLVFYVPMLVLNTFVLISFW-TKPLTM 535
+ L NS E+ T D +I+T+ DL++ + + Y+P ++ +SFW K
Sbjct: 241 VGLRNSTEITHTISGDYVIMTIFFDLSRRMGYFTIQTYIPCILTVVLSWVSFWINKDAVP 300
Query: 534 SRIWFYVACVVSICFGLCYIDYLIPIHAIPTIMVLYVTVLFGLMTAVMANVLLISNF-GE 358
+R + V+++ +P + T M L+V+V F + A + + F
Sbjct: 301 ARTSLGITTVLTMTTLSTIARKSLPKVSYVTAMDLFVSVCFIFVFAALMEYGTLHYFTSN 360
Query: 357 ALGKSSAMKQVLTCGVVRAVFCLPSMKKAANGDYSVQEDDDSSY 226
GK++ + L P + SV ++DD Y
Sbjct: 361 QKGKTATKDRKLKNKASMTPGLHPGSTLIPMNNISVPQEDDYEY 404
>M34517-1|AAA99887.1| 108|Homo sapiens omega protein protein.
Length = 108
Score = 34.3 bits (75), Expect = 0.58
Identities = 19/48 (39%), Positives = 27/48 (56%)
Frame = +3
Query: 528 SLTSSVASSRTILRRTCLGPT*ARRTPGCTSQGFWLSPQ**SSCHLNG 671
S+ SS +S R++ R L P+ R P C +GFW PQ S C++ G
Sbjct: 55 SVGSSRSSLRSLWGRLLLQPSPQRAPPRCWPRGFWSEPQ--SLCYVFG 100
>DQ644022-1|ABG35128.1| 456|Homo sapiens 5-HT3 receptor subunit E
splice variant HTR3Ea protein.
Length = 456
Score = 34.3 bits (75), Expect = 0.58
Identities = 23/101 (22%), Positives = 45/101 (44%)
Frame = -3
Query: 669 HLSDKMIITVDLAKNPDLYNLVFYVPMLVLNTFVLISFWTKPLTMSRIWFYVACVVSICF 490
+L D+++ V + + P LY + VP L +SF+ + +R+ F + ++
Sbjct: 232 NLYDQIVFYVAIRRRPSLYVINLLVPSGFLVAIDALSFYLPVKSGNRVPFKITLLLGYNV 291
Query: 489 GLCYIDYLIPIHAIPTIMVLYVTVLFGLMTAVMANVLLISN 367
L + L+P P I V Y + LM + + I++
Sbjct: 292 FLLMMSDLLPTSGTPLIGV-YFALCLSLMVGSLLETIFITH 331
>BC101183-1|AAI01184.1| 471|Homo sapiens 5-hydroxytryptamine
(serotonin) receptor 3, family member E protein.
Length = 471
Score = 34.3 bits (75), Expect = 0.58
Identities = 23/101 (22%), Positives = 45/101 (44%)
Frame = -3
Query: 669 HLSDKMIITVDLAKNPDLYNLVFYVPMLVLNTFVLISFWTKPLTMSRIWFYVACVVSICF 490
+L D+++ V + + P LY + VP L +SF+ + +R+ F + ++
Sbjct: 247 NLYDQIVFYVAIRRRPSLYVINLLVPSGFLVAIDALSFYLPVKSGNRVPFKITLLLGYNV 306
Query: 489 GLCYIDYLIPIHAIPTIMVLYVTVLFGLMTAVMANVLLISN 367
L + L+P P I V Y + LM + + I++
Sbjct: 307 FLLMMSDLLPTSGTPLIGV-YFALCLSLMVGSLLETIFITH 346
>BC101182-1|AAI01183.1| 471|Homo sapiens 5-hydroxytryptamine
(serotonin) receptor 3, family member E protein.
Length = 471
Score = 34.3 bits (75), Expect = 0.58
Identities = 23/101 (22%), Positives = 45/101 (44%)
Frame = -3
Query: 669 HLSDKMIITVDLAKNPDLYNLVFYVPMLVLNTFVLISFWTKPLTMSRIWFYVACVVSICF 490
+L D+++ V + + P LY + VP L +SF+ + +R+ F + ++
Sbjct: 247 NLYDQIVFYVAIRRRPSLYVINLLVPSGFLVAIDALSFYLPVKSGNRVPFKITLLLGYNV 306
Query: 489 GLCYIDYLIPIHAIPTIMVLYVTVLFGLMTAVMANVLLISN 367
L + L+P P I V Y + LM + + I++
Sbjct: 307 FLLMMSDLLPTSGTPLIGV-YFALCLSLMVGSLLETIFITH 346
>AY349353-1|AAQ93477.1| 456|Homo sapiens 5-HT3c1 serotonin
receptor-like protein protein.
Length = 456
Score = 34.3 bits (75), Expect = 0.58
Identities = 23/101 (22%), Positives = 45/101 (44%)
Frame = -3
Query: 669 HLSDKMIITVDLAKNPDLYNLVFYVPMLVLNTFVLISFWTKPLTMSRIWFYVACVVSICF 490
+L D+++ V + + P LY + VP L +SF+ + +R+ F + ++
Sbjct: 232 NLYDQIVFYVAIRRRPSLYVINLLVPSGFLVAIDALSFYLPVKSGNRVPFKITLLLGYNV 291
Query: 489 GLCYIDYLIPIHAIPTIMVLYVTVLFGLMTAVMANVLLISN 367
L + L+P P I V Y + LM + + I++
Sbjct: 292 FLLMMSDLLPTSGTPLIGV-YFALCLSLMVGSLLETIFITH 331
>AY349352-1|AAQ93476.1| 441|Homo sapiens 5-HT3c1 serotonin
receptor-like protein protein.
Length = 441
Score = 34.3 bits (75), Expect = 0.58
Identities = 23/101 (22%), Positives = 45/101 (44%)
Frame = -3
Query: 669 HLSDKMIITVDLAKNPDLYNLVFYVPMLVLNTFVLISFWTKPLTMSRIWFYVACVVSICF 490
+L D+++ V + + P LY + VP L +SF+ + +R+ F + ++
Sbjct: 217 NLYDQIVFYVAIRRRPSLYVINLLVPSGFLVAIDALSFYLPVKSGNRVPFKITLLLGYNV 276
Query: 489 GLCYIDYLIPIHAIPTIMVLYVTVLFGLMTAVMANVLLISN 367
L + L+P P I V Y + LM + + I++
Sbjct: 277 FLLMMSDLLPTSGTPLIGV-YFALCLSLMVGSLLETIFITH 316
>AY159813-1|AAO38167.2| 471|Homo sapiens 5-hydroxytryptamine
serotonin receptor 3E protein.
Length = 471
Score = 34.3 bits (75), Expect = 0.58
Identities = 23/101 (22%), Positives = 45/101 (44%)
Frame = -3
Query: 669 HLSDKMIITVDLAKNPDLYNLVFYVPMLVLNTFVLISFWTKPLTMSRIWFYVACVVSICF 490
+L D+++ V + + P LY + VP L +SF+ + +R+ F + ++
Sbjct: 247 NLYDQIVFYVAIRRRPSLYVINLLVPSGFLVAIDALSFYLPVKSGNRVPFKITLLLGYNV 306
Query: 489 GLCYIDYLIPIHAIPTIMVLYVTVLFGLMTAVMANVLLISN 367
L + L+P P I V Y + LM + + I++
Sbjct: 307 FLLMMSDLLPTSGTPLIGV-YFALCLSLMVGSLLETIFITH 346
>AJ318022-1|CAC51026.1| 214|Homo sapiens immunoglobulin lambda-3
surrogate light chain protein.
Length = 214
Score = 34.3 bits (75), Expect = 0.58
Identities = 19/48 (39%), Positives = 27/48 (56%)
Frame = +3
Query: 528 SLTSSVASSRTILRRTCLGPT*ARRTPGCTSQGFWLSPQ**SSCHLNG 671
S+ SS +S R++ R L P+ R P C +GFW PQ S C++ G
Sbjct: 55 SVGSSRSSLRSLWGRLLLQPSPQRADPRCWPRGFWSEPQ--SLCYVFG 100
>X15376-1|CAA33437.1| 467|Homo sapiens GABA-A receptor gamma 2
subunit protein.
Length = 467
Score = 33.9 bits (74), Expect = 0.77
Identities = 28/124 (22%), Positives = 57/124 (45%), Gaps = 7/124 (5%)
Frame = -3
Query: 762 EWQIMTEQVTLDSAMWN----EIIDLINSEEVLTTHLSDKMIITV--DLAKNPDLYNLVF 601
+W+ + +V D+ W + L N+ EV+ T D ++++V DL++ + +
Sbjct: 221 QWKRSSVEVG-DTRSWRLYQFSFVGLRNTTEVVKTTSGDYVVMSVYFDLSRRMGYFTIQT 279
Query: 600 YVPMLVLNTFVLISFW-TKPLTMSRIWFYVACVVSICFGLCYIDYLIPIHAIPTIMVLYV 424
Y+P ++ +SFW K +R + V+++ +P + T M L+V
Sbjct: 280 YIPCTLIVVLSWVSFWINKDAVPARTSLGITTVLTMTTLSTIARKSLPKVSYVTAMDLFV 339
Query: 423 TVLF 412
+V F
Sbjct: 340 SVCF 343
>BC131799-1|AAI31800.1| 447|Homo sapiens 5-hydroxytryptamine
(serotonin) receptor 3, family member C protein.
Length = 447
Score = 33.9 bits (74), Expect = 0.77
Identities = 21/98 (21%), Positives = 45/98 (45%)
Frame = -3
Query: 669 HLSDKMIITVDLAKNPDLYNLVFYVPMLVLNTFVLISFWTKPLTMSRIWFYVACVVSICF 490
+L D+++ V + + P LY + VP L +SF+ + +R F + ++
Sbjct: 232 NLYDQIMFYVAIRRRPSLYIINLLVPSSFLVAIDALSFYLPAESENRAPFKITLLLGYNV 291
Query: 489 GLCYIDYLIPIHAIPTIMVLYVTVLFGLMTAVMANVLL 376
L ++ L+P P I V + L ++ +++ V +
Sbjct: 292 FLLMMNDLLPASGTPLISVYFALCLSLMVVSLLETVFI 329
>BC074795-1|AAH74795.1| 467|Homo sapiens gamma-aminobutyric acid
(GABA) A receptor, gamma 2 protein.
Length = 467
Score = 33.9 bits (74), Expect = 0.77
Identities = 28/124 (22%), Positives = 57/124 (45%), Gaps = 7/124 (5%)
Frame = -3
Query: 762 EWQIMTEQVTLDSAMWN----EIIDLINSEEVLTTHLSDKMIITV--DLAKNPDLYNLVF 601
+W+ + +V D+ W + L N+ EV+ T D ++++V DL++ + +
Sbjct: 221 QWKRSSVEVG-DTRSWRLYQFSFVGLRNTTEVVKTTSGDYVVMSVYFDLSRRMGYFTIQT 279
Query: 600 YVPMLVLNTFVLISFW-TKPLTMSRIWFYVACVVSICFGLCYIDYLIPIHAIPTIMVLYV 424
Y+P ++ +SFW K +R + V+++ +P + T M L+V
Sbjct: 280 YIPCTLIVVLSWVSFWINKDAVPARTSLGITTVLTMTTLSTIARKSLPKVSYVTAMDLFV 339
Query: 423 TVLF 412
+V F
Sbjct: 340 SVCF 343
>BC069348-1|AAH69348.1| 467|Homo sapiens gamma-aminobutyric acid A
receptor, gamma 2, isoform 2 precursor protein.
Length = 467
Score = 33.9 bits (74), Expect = 0.77
Identities = 28/124 (22%), Positives = 57/124 (45%), Gaps = 7/124 (5%)
Frame = -3
Query: 762 EWQIMTEQVTLDSAMWN----EIIDLINSEEVLTTHLSDKMIITV--DLAKNPDLYNLVF 601
+W+ + +V D+ W + L N+ EV+ T D ++++V DL++ + +
Sbjct: 221 QWKRSSVEVG-DTRSWRLYQFSFVGLRNTTEVVKTTSGDYVVMSVYFDLSRRMGYFTIQT 279
Query: 600 YVPMLVLNTFVLISFW-TKPLTMSRIWFYVACVVSICFGLCYIDYLIPIHAIPTIMVLYV 424
Y+P ++ +SFW K +R + V+++ +P + T M L+V
Sbjct: 280 YIPCTLIVVLSWVSFWINKDAVPARTSLGITTVLTMTTLSTIARKSLPKVSYVTAMDLFV 339
Query: 423 TVLF 412
+V F
Sbjct: 340 SVCF 343
>BC059389-1|AAH59389.1| 475|Homo sapiens gamma-aminobutyric acid
(GABA) A receptor, gamma 2 protein.
Length = 475
Score = 33.9 bits (74), Expect = 0.77
Identities = 28/124 (22%), Positives = 57/124 (45%), Gaps = 7/124 (5%)
Frame = -3
Query: 762 EWQIMTEQVTLDSAMWN----EIIDLINSEEVLTTHLSDKMIITV--DLAKNPDLYNLVF 601
+W+ + +V D+ W + L N+ EV+ T D ++++V DL++ + +
Sbjct: 221 QWKRSSVEVG-DTRSWRLYQFSFVGLRNTTEVVKTTSGDYVVMSVYFDLSRRMGYFTIQT 279
Query: 600 YVPMLVLNTFVLISFW-TKPLTMSRIWFYVACVVSICFGLCYIDYLIPIHAIPTIMVLYV 424
Y+P ++ +SFW K +R + V+++ +P + T M L+V
Sbjct: 280 YIPCTLIVVLSWVSFWINKDAVPARTSLGITTVLTMTTLSTIARKSLPKVSYVTAMDLFV 339
Query: 423 TVLF 412
+V F
Sbjct: 340 SVCF 343
>AF459285-1|AAL66182.1| 447|Homo sapiens 5-hydroxytryptamine
receptor 3 subunit C protein.
Length = 447
Score = 33.9 bits (74), Expect = 0.77
Identities = 21/98 (21%), Positives = 45/98 (45%)
Frame = -3
Query: 669 HLSDKMIITVDLAKNPDLYNLVFYVPMLVLNTFVLISFWTKPLTMSRIWFYVACVVSICF 490
+L D+++ V + + P LY + VP L +SF+ + +R F + ++
Sbjct: 232 NLYDQIMFYVAIRRRPSLYIINLLVPSSFLVAIDALSFYLPAESENRAPFKITLLLGYNV 291
Query: 489 GLCYIDYLIPIHAIPTIMVLYVTVLFGLMTAVMANVLL 376
L ++ L+P P I V + L ++ +++ V +
Sbjct: 292 FLLMMNDLLPASGTPLISVYFALCLSLMVVSLLETVFI 329
>AF165124-1|AAD50273.1| 467|Homo sapiens gamma-aminobutyric acid A
receptor gamma 2 protein.
Length = 467
Score = 33.9 bits (74), Expect = 0.77
Identities = 28/124 (22%), Positives = 57/124 (45%), Gaps = 7/124 (5%)
Frame = -3
Query: 762 EWQIMTEQVTLDSAMWN----EIIDLINSEEVLTTHLSDKMIITV--DLAKNPDLYNLVF 601
+W+ + +V D+ W + L N+ EV+ T D ++++V DL++ + +
Sbjct: 221 QWKRSSVEVG-DTRSWRLYQFSFVGLRNTTEVVKTTSGDYVVMSVYFDLSRRMGYFTIQT 279
Query: 600 YVPMLVLNTFVLISFW-TKPLTMSRIWFYVACVVSICFGLCYIDYLIPIHAIPTIMVLYV 424
Y+P ++ +SFW K +R + V+++ +P + T M L+V
Sbjct: 280 YIPCTLIVVLSWVSFWINKDAVPARTSLGITTVLTMTTLSTIARKSLPKVSYVTAMDLFV 339
Query: 423 TVLF 412
+V F
Sbjct: 340 SVCF 343
>AB065887-1|BAC06104.1| 324|Homo sapiens seven transmembrane helix
receptor protein.
Length = 324
Score = 33.9 bits (74), Expect = 0.77
Identities = 18/77 (23%), Positives = 41/77 (53%), Gaps = 7/77 (9%)
Frame = -3
Query: 609 LVFYVPMLVLNTFVLI--SFWTKPLTMSRIWFYVAC-----VVSICFGLCYIDYLIPIHA 451
++F+ M +L +++L+ + + P R + C VVS+ +G + Y+ P +
Sbjct: 216 VLFFTSMYILRSYILLLTAVFQVPSAAGRRKAFSTCGSHLVVVSLFYGTVMVMYVSPTYG 275
Query: 450 IPTIMVLYVTVLFGLMT 400
IPT++ +T+++ + T
Sbjct: 276 IPTLLQKILTLVYSVTT 292
>AJ318021-1|CAC50882.1| 215|Homo sapiens immunoglobulin lambda-3
surrogate light chain protein.
Length = 215
Score = 32.7 bits (71), Expect = 1.8
Identities = 21/50 (42%), Positives = 27/50 (54%), Gaps = 5/50 (10%)
Frame = +3
Query: 537 SSVASSRTILR-----RTCLGPT*ARRTPGCTSQGFWLSPQ**SSCHLNG 671
+SV SSR+ LR R L P+ R P C +GFW PQ S C++ G
Sbjct: 54 ASVGSSRSSLRSLWGSRLLLQPSPQRADPRCWPRGFWSEPQ--SLCYVFG 101
>AF137396-7|AAG41681.1| 326|Homo sapiens HOR5'Beta7 protein.
Length = 326
Score = 31.9 bits (69), Expect = 3.1
Identities = 22/72 (30%), Positives = 34/72 (47%)
Frame = -3
Query: 666 LSDKMIITVDLAKNPDLYNLVFYVPMLVLNTFVLISFWTKPLTMSRIWFYVACVVSICFG 487
+S I + + NP L+ ++Y+ L+ T + + T P TM WF SI FG
Sbjct: 51 ISGNCFILIIIKTNPRLHTPMYYLLSLLALTDLGLCVSTLPTTMGIFWFNSQ---SIYFG 107
Query: 486 LCYIDYLIPIHA 451
C I + IH+
Sbjct: 108 ACQIQ-MFCIHS 118
>DQ993202-1|ABJ97707.1| 886|Homo sapiens extended-synaptotagmin 3
protein.
Length = 886
Score = 30.3 bits (65), Expect = 9.5
Identities = 19/56 (33%), Positives = 31/56 (55%)
Frame = -3
Query: 732 LDSAMWNEIIDLINSEEVLTTHLSDKMIITVDLAKNPDLYNLVFYVPMLVLNTFVL 565
LD+ N++ D + E+++ THL +TV + K DL NL F +P V+ +L
Sbjct: 259 LDAPGINDVSDSL-LEDLIATHLVLPNRVTVPVKKGLDLTNLRFPLPCGVIRVHLL 313
>BC037292-1|AAH37292.1| 501|Homo sapiens FAM62C protein protein.
Length = 501
Score = 30.3 bits (65), Expect = 9.5
Identities = 19/56 (33%), Positives = 31/56 (55%)
Frame = -3
Query: 732 LDSAMWNEIIDLINSEEVLTTHLSDKMIITVDLAKNPDLYNLVFYVPMLVLNTFVL 565
LD+ N++ D + E+++ THL +TV + K DL NL F +P V+ +L
Sbjct: 259 LDAPGINDVSDSL-LEDLIATHLVLPNRVTVPVKKGLDLTNLRFPLPCGVIRVHLL 313
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 117,845,503
Number of Sequences: 237096
Number of extensions: 2505085
Number of successful extensions: 5460
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 5103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5453
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11048563978
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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