Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc11c03
         (869 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY005148-1|AAF89090.1|  441|Drosophila melanogaster nicotinic ac...    41   0.002
AJ318761-1|CAC48166.1|  441|Drosophila melanogaster nicotinic ac...    41   0.002
AE014134-120|AAF51485.1|  441|Drosophila melanogaster CG11822-PA...    41   0.002
AF045471-1|AAF18569.1|  388|Drosophila melanogaster DNtR protein.      41   0.003
AE013599-3342|AAF46805.1|  585|Drosophila melanogaster CG6698-PA...    41   0.003
X80111-1|CAA56416.1|  347|Drosophila melanogaster synapse-associ...    31   2.1  
X80110-1|CAA56415.1|  351|Drosophila melanogaster synapse associ...    31   2.1  
AE014297-2122|AAN13688.1|  351|Drosophila melanogaster CG8884-PF...    31   2.1  
D88898-1|BAA85188.1| 1198|Drosophila melanogaster focal adhesion...    29   8.3  
BT021255-1|AAX33403.1| 1200|Drosophila melanogaster RE57482p pro...    29   8.3  
AY886895-1|AAY34268.1|  310|Drosophila melanogaster focal adhesi...    29   8.3  
AF201701-1|AAF15292.1| 1200|Drosophila melanogaster focal adhesi...    29   8.3  
AF112116-1|AAF07854.1| 1200|Drosophila melanogaster focal adhesi...    29   8.3  
AE013599-2884|AAM70853.1| 1200|Drosophila melanogaster CG10023-P...    29   8.3  
AE013599-2883|AAM70852.1| 1200|Drosophila melanogaster CG10023-P...    29   8.3  
AE013599-2882|AAF57562.1| 1200|Drosophila melanogaster CG10023-P...    29   8.3  

>AY005148-1|AAF89090.1|  441|Drosophila melanogaster nicotinic
           acetylcholine receptorbeta subunit protein.
          Length = 441

 Score = 41.1 bits (92), Expect = 0.002
 Identities = 45/196 (22%), Positives = 75/196 (38%), Gaps = 10/196 (5%)
 Frame = -3

Query: 654 MIITVDLAKNPDLYNLVFYVPMLVLNTFVLISFWTKP-LTMSRIWFYVACVVSICFGLCY 478
           M  T+   +   +Y  V Y P   +    L +FW  P +   +I      ++ I   L Y
Sbjct: 238 MEYTLTAQRRSSMYTAVIYTPASCIVILALSAFWLPPHMGGEKIMINGLLIIVIAAFLMY 297

Query: 477 IDYLIPI--HAIPTIMVLYVTVLFGLMTAVMANVL-LISNFGEALGKSSAMKQVLTCGVV 307
              L+P+  +  P +++ Y T L  L  + +  VL L    G+   +     + L  G +
Sbjct: 298 FAQLLPVLSNNTPLVVIFYSTSLLYLSVSTIVEVLVLYLATGKHKRRLPEALRKLLHGHL 357

Query: 306 RAVFCLPSMKKAANGD-YSVQEDDDSSY-TVDSRE----GVEEMERSDKEIKYGDKAELA 145
                L              +E D+  Y   D +E    G+   E    +    D A LA
Sbjct: 358 GTWLLLSVFSTTGESQAEKTKEMDEHPYEEADEQESSPLGINHTEVPGAKANQFDWALLA 417

Query: 144 VVVDKILFVVYLIVFV 97
             VD+I FV + + F+
Sbjct: 418 TAVDRISFVSFSLAFL 433


>AJ318761-1|CAC48166.1|  441|Drosophila melanogaster nicotinic
           acetylcholine receptorbeta 3 (Dbeta3) subunit protein.
          Length = 441

 Score = 41.1 bits (92), Expect = 0.002
 Identities = 45/196 (22%), Positives = 75/196 (38%), Gaps = 10/196 (5%)
 Frame = -3

Query: 654 MIITVDLAKNPDLYNLVFYVPMLVLNTFVLISFWTKP-LTMSRIWFYVACVVSICFGLCY 478
           M  T+   +   +Y  V Y P   +    L +FW  P +   +I      ++ I   L Y
Sbjct: 238 MEYTLTAQRRSSMYTAVIYTPASCIVILALSAFWLPPHMGGEKIMINGLLIIVIAAFLMY 297

Query: 477 IDYLIPI--HAIPTIMVLYVTVLFGLMTAVMANVL-LISNFGEALGKSSAMKQVLTCGVV 307
              L+P+  +  P +++ Y T L  L  + +  VL L    G+   +     + L  G +
Sbjct: 298 FAQLLPVLSNNTPLVVIFYSTSLLYLSVSTIVEVLVLYLATGKHKRRLPEALRKLLHGHL 357

Query: 306 RAVFCLPSMKKAANGD-YSVQEDDDSSY-TVDSRE----GVEEMERSDKEIKYGDKAELA 145
                L              +E D+  Y   D +E    G+   E    +    D A LA
Sbjct: 358 GTWLLLSVFSTTGESQAEKTKEMDEHPYEEADEQESSPLGINHTEVPGAKANQFDWALLA 417

Query: 144 VVVDKILFVVYLIVFV 97
             VD+I FV + + F+
Sbjct: 418 TAVDRISFVSFSLAFL 433


>AE014134-120|AAF51485.1|  441|Drosophila melanogaster CG11822-PA,
           isoform A protein.
          Length = 441

 Score = 41.1 bits (92), Expect = 0.002
 Identities = 45/196 (22%), Positives = 75/196 (38%), Gaps = 10/196 (5%)
 Frame = -3

Query: 654 MIITVDLAKNPDLYNLVFYVPMLVLNTFVLISFWTKP-LTMSRIWFYVACVVSICFGLCY 478
           M  T+   +   +Y  V Y P   +    L +FW  P +   +I      ++ I   L Y
Sbjct: 238 MEYTLTAQRRSSMYTAVIYTPASCIVILALSAFWLPPHMGGEKIMINGLLIIVIAAFLMY 297

Query: 477 IDYLIPI--HAIPTIMVLYVTVLFGLMTAVMANVL-LISNFGEALGKSSAMKQVLTCGVV 307
              L+P+  +  P +++ Y T L  L  + +  VL L    G+   +     + L  G +
Sbjct: 298 FAQLLPVLSNNTPLVVIFYSTSLLYLSVSTIVEVLVLYLATGKHKRRLPEALRKLLHGHL 357

Query: 306 RAVFCLPSMKKAANGD-YSVQEDDDSSY-TVDSRE----GVEEMERSDKEIKYGDKAELA 145
                L              +E D+  Y   D +E    G+   E    +    D A LA
Sbjct: 358 GTWLLLSVFSTTGESQAEKTKEMDEHPYEEADEQESSPLGINHTEVPGAKANQFDWALLA 417

Query: 144 VVVDKILFVVYLIVFV 97
             VD+I FV + + F+
Sbjct: 418 TAVDRISFVSFSLAFL 433


>AF045471-1|AAF18569.1|  388|Drosophila melanogaster DNtR protein.
          Length = 388

 Score = 40.7 bits (91), Expect = 0.003
 Identities = 21/98 (21%), Positives = 47/98 (47%)
 Frame = -3

Query: 666 LSDKMIITVDLAKNPDLYNLVFYVPMLVLNTFVLISFWTKPLTMSRIWFYVACVVSICFG 487
           ++  + I   L +N   Y  VFY+P++    F+++SF  +    S +   +A +++  +G
Sbjct: 219 MTGDVAIEFTLQRNRSFYMTVFYLPLIACQMFLILSFVLRSTRRSSL-ILIALLIA-AWG 276

Query: 486 LCYIDYLIPIHAIPTIMVLYVTVLFGLMTAVMANVLLI 373
           L Y+      H +P +M  Y  ++       + ++ +I
Sbjct: 277 LMYMTRYASPHYVPPMMTAYKVIMMTTTYCYILHICII 314


>AE013599-3342|AAF46805.1|  585|Drosophila melanogaster CG6698-PA
           protein.
          Length = 585

 Score = 40.7 bits (91), Expect = 0.003
 Identities = 21/98 (21%), Positives = 47/98 (47%)
 Frame = -3

Query: 666 LSDKMIITVDLAKNPDLYNLVFYVPMLVLNTFVLISFWTKPLTMSRIWFYVACVVSICFG 487
           ++  + I   L +N   Y  VFY+P++    F+++SF  +    S +   +A +++  +G
Sbjct: 416 MTGDVAIEFTLQRNRSFYMTVFYLPLIACQMFLILSFVLRSTRRSSL-ILIALLIA-AWG 473

Query: 486 LCYIDYLIPIHAIPTIMVLYVTVLFGLMTAVMANVLLI 373
           L Y+      H +P +M  Y  ++       + ++ +I
Sbjct: 474 LMYMTRYASPHYVPPMMTAYKVIMMTTTYCYILHICII 511


>X80111-1|CAA56416.1|  347|Drosophila melanogaster
           synapse-associated protein protein.
          Length = 347

 Score = 31.1 bits (67), Expect = 2.1
 Identities = 16/49 (32%), Positives = 24/49 (48%)
 Frame = -3

Query: 273 AANGDYSVQEDDDSSYTVDSREGVEEMERSDKEIKYGDKAELAVVVDKI 127
           AA+G  S  EDDD S  + + EG +    S      GD+ ++  V  K+
Sbjct: 137 AASGAVSGGEDDDKSRYISATEGADSHPASGGGTPTGDEGQIGQVTTKV 185


>X80110-1|CAA56415.1|  351|Drosophila melanogaster synapse
           associated protein protein.
          Length = 351

 Score = 31.1 bits (67), Expect = 2.1
 Identities = 16/49 (32%), Positives = 24/49 (48%)
 Frame = -3

Query: 273 AANGDYSVQEDDDSSYTVDSREGVEEMERSDKEIKYGDKAELAVVVDKI 127
           AA+G  S  EDDD S  + + EG +    S      GD+ ++  V  K+
Sbjct: 137 AASGAVSGGEDDDKSRYISATEGADSHPASGGGTPTGDEGQIGQVTTKV 185


>AE014297-2122|AAN13688.1|  351|Drosophila melanogaster CG8884-PF,
           isoform F protein.
          Length = 351

 Score = 31.1 bits (67), Expect = 2.1
 Identities = 16/49 (32%), Positives = 24/49 (48%)
 Frame = -3

Query: 273 AANGDYSVQEDDDSSYTVDSREGVEEMERSDKEIKYGDKAELAVVVDKI 127
           AA+G  S  EDDD S  + + EG +    S      GD+ ++  V  K+
Sbjct: 137 AASGAVSGGEDDDKSRYISATEGADSHPASGGGTPTGDEGQIGQVTTKV 185


>D88898-1|BAA85188.1| 1198|Drosophila melanogaster focal adhesion
           kinase protein.
          Length = 1198

 Score = 29.1 bits (62), Expect = 8.3
 Identities = 16/51 (31%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
 Frame = +3

Query: 333 SLLTTSPTPHRSSILG-ARWPSQQSLVQTRPSRTVPLW*VSHESVLNNRYS 482
           ++L +SPT  + +  G +RW S QS   + P+  +P+  +S ES+   R++
Sbjct: 610 NVLVSSPTCVKLADFGLSRWVSDQSYYHSTPTVALPIKWMSPESINFRRFT 660


>BT021255-1|AAX33403.1| 1200|Drosophila melanogaster RE57482p
           protein.
          Length = 1200

 Score = 29.1 bits (62), Expect = 8.3
 Identities = 16/51 (31%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
 Frame = +3

Query: 333 SLLTTSPTPHRSSILG-ARWPSQQSLVQTRPSRTVPLW*VSHESVLNNRYS 482
           ++L +SPT  + +  G +RW S QS   + P+  +P+  +S ES+   R++
Sbjct: 610 NVLVSSPTCVKLADFGLSRWVSDQSYYHSTPTVALPIKWMSPESINFRRFT 660


>AY886895-1|AAY34268.1|  310|Drosophila melanogaster focal adhesion
           kinase protein.
          Length = 310

 Score = 29.1 bits (62), Expect = 8.3
 Identities = 16/51 (31%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
 Frame = +3

Query: 333 SLLTTSPTPHRSSILG-ARWPSQQSLVQTRPSRTVPLW*VSHESVLNNRYS 482
           ++L +SPT  + +  G +RW S QS   + P+  +P+  +S ES+   R++
Sbjct: 184 NVLVSSPTCVKLADFGLSRWVSDQSYYHSTPTVALPIKWMSPESINFRRFT 234


>AF201701-1|AAF15292.1| 1200|Drosophila melanogaster focal adhesion
           kinase homologFAK56 protein.
          Length = 1200

 Score = 29.1 bits (62), Expect = 8.3
 Identities = 16/51 (31%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
 Frame = +3

Query: 333 SLLTTSPTPHRSSILG-ARWPSQQSLVQTRPSRTVPLW*VSHESVLNNRYS 482
           ++L +SPT  + +  G +RW S QS   + P+  +P+  +S ES+   R++
Sbjct: 610 NVLVSSPTCVKLADFGLSRWVSDQSYYHSTPTVALPIKWMSPESINFRRFT 660


>AF112116-1|AAF07854.1| 1200|Drosophila melanogaster focal adhesion
           kinase homologDFak56 protein.
          Length = 1200

 Score = 29.1 bits (62), Expect = 8.3
 Identities = 16/51 (31%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
 Frame = +3

Query: 333 SLLTTSPTPHRSSILG-ARWPSQQSLVQTRPSRTVPLW*VSHESVLNNRYS 482
           ++L +SPT  + +  G +RW S QS   + P+  +P+  +S ES+   R++
Sbjct: 610 NVLVSSPTCVKLADFGLSRWVSDQSYYHSTPTVALPIKWMSPESINFRRFT 660


>AE013599-2884|AAM70853.1| 1200|Drosophila melanogaster CG10023-PC,
           isoform C protein.
          Length = 1200

 Score = 29.1 bits (62), Expect = 8.3
 Identities = 16/51 (31%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
 Frame = +3

Query: 333 SLLTTSPTPHRSSILG-ARWPSQQSLVQTRPSRTVPLW*VSHESVLNNRYS 482
           ++L +SPT  + +  G +RW S QS   + P+  +P+  +S ES+   R++
Sbjct: 610 NVLVSSPTCVKLADFGLSRWVSDQSYYHSTPTVALPIKWMSPESINFRRFT 660


>AE013599-2883|AAM70852.1| 1200|Drosophila melanogaster CG10023-PB,
           isoform B protein.
          Length = 1200

 Score = 29.1 bits (62), Expect = 8.3
 Identities = 16/51 (31%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
 Frame = +3

Query: 333 SLLTTSPTPHRSSILG-ARWPSQQSLVQTRPSRTVPLW*VSHESVLNNRYS 482
           ++L +SPT  + +  G +RW S QS   + P+  +P+  +S ES+   R++
Sbjct: 610 NVLVSSPTCVKLADFGLSRWVSDQSYYHSTPTVALPIKWMSPESINFRRFT 660


>AE013599-2882|AAF57562.1| 1200|Drosophila melanogaster CG10023-PA,
           isoform A protein.
          Length = 1200

 Score = 29.1 bits (62), Expect = 8.3
 Identities = 16/51 (31%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
 Frame = +3

Query: 333 SLLTTSPTPHRSSILG-ARWPSQQSLVQTRPSRTVPLW*VSHESVLNNRYS 482
           ++L +SPT  + +  G +RW S QS   + P+  +P+  +S ES+   R++
Sbjct: 610 NVLVSSPTCVKLADFGLSRWVSDQSYYHSTPTVALPIKWMSPESINFRRFT 660


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 36,562,382
Number of Sequences: 53049
Number of extensions: 794394
Number of successful extensions: 2668
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 2408
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2668
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 4209111660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)