Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc11c03
(869 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z67737-1|CAA91536.2| 399|Caenorhabditis elegans Hypothetical pr... 33 0.27
AF022973-5|AAC25797.4| 479|Caenorhabditis elegans Acetylcholine... 33 0.27
U39849-1|AAA81045.2| 332|Caenorhabditis elegans Serpentine rece... 31 1.4
Z50016-2|CAC42346.1| 487|Caenorhabditis elegans Hypothetical pr... 29 3.3
Z50016-1|CAA90318.1| 1106|Caenorhabditis elegans Hypothetical pr... 29 3.3
AF151640-1|AAD42382.1| 487|Caenorhabditis elegans ionotropic GA... 29 3.3
AF067216-8|AAN84852.1| 954|Caenorhabditis elegans Hypothetical ... 29 3.3
AF067216-7|AAC17521.1| 1262|Caenorhabditis elegans Hypothetical ... 29 3.3
AF024501-8|AAN65318.1| 550|Caenorhabditis elegans Hypothetical ... 29 3.3
Z49909-7|CAA90110.1| 158|Caenorhabditis elegans Hypothetical pr... 29 4.3
AF100657-5|AAC68960.1| 451|Caenorhabditis elegans Hypothetical ... 29 4.3
Z81118-10|CAB61029.1| 657|Caenorhabditis elegans Hypothetical p... 29 5.7
Z81118-1|CAB03329.1| 478|Caenorhabditis elegans Hypothetical pr... 29 5.7
Z77668-2|CAB61021.1| 657|Caenorhabditis elegans Hypothetical pr... 29 5.7
Z67737-5|CAA91541.2| 401|Caenorhabditis elegans Hypothetical pr... 29 5.7
Z67737-4|CAA91539.2| 401|Caenorhabditis elegans Hypothetical pr... 29 5.7
AL132902-4|CAC14420.1| 1913|Caenorhabditis elegans Hypothetical ... 29 5.7
AJ000538-1|CAA04171.1| 657|Caenorhabditis elegans GluClalpha2A ... 29 5.7
AJ000537-1|CAA04170.1| 478|Caenorhabditis elegans GluClalpha2B ... 29 5.7
Z30317-4|CAB54306.1| 378|Caenorhabditis elegans Hypothetical pr... 28 7.5
Z81575-6|CAB04633.1| 344|Caenorhabditis elegans Hypothetical pr... 28 10.0
U80438-5|AAB37636.1| 1217|Caenorhabditis elegans Nuclear pore co... 28 10.0
>Z67737-1|CAA91536.2| 399|Caenorhabditis elegans Hypothetical
protein T01H10.1 protein.
Length = 399
Score = 33.1 bits (72), Expect = 0.27
Identities = 32/149 (21%), Positives = 68/149 (45%), Gaps = 7/149 (4%)
Frame = -3
Query: 795 MFSDIDTVIHNEWQIMTEQVTLDSAMWN---EIIDLINSEEVLTTHLS---DKMIITVDL 634
+FS ++ I+ E ++ M N E+I+L N + LT + + + + +
Sbjct: 195 IFSYLEVKIYTELYEGINNYSMFEVMGNSEWELINLTNRVDFLTYNDRFDVELAVYEIKI 254
Query: 633 AKNPDLYNLVFYVPMLVLNTFVLISFWTKPL-TMSRIWFYVACVVSICFGLCYIDYLIPI 457
A+NP Y + P V+N+ ++ + K MSR+ + ++++ F L + IP
Sbjct: 255 ARNPLYYFYMIVFPSFVINSVSIVGVFIKGADKMSRLNVGLTNIMTMTFILGVMSDKIPR 314
Query: 456 HAIPTIMVLYVTVLFGLMTAVMANVLLIS 370
++ +Y+ V +M + V +I+
Sbjct: 315 TGNVPLLGIYIIVNLLIMLVAIIIVTIIT 343
>AF022973-5|AAC25797.4| 479|Caenorhabditis elegans Acetylcholine
receptor protein 15 protein.
Length = 479
Score = 33.1 bits (72), Expect = 0.27
Identities = 19/85 (22%), Positives = 38/85 (44%), Gaps = 2/85 (2%)
Frame = -3
Query: 660 DKMIITVDLAKNPDLYNLVFYVPMLVLNTFVLISFWTKPLTMSRIWFYVACVVSICFGLC 481
+ + T+ L + Y+ P+L+ V++ F P T ++ ++ ++IC L
Sbjct: 214 EDITFTLHLRRRTLYYSFNLIAPVLLTMILVILGFTVSPETCEKVGLQISVSLAICIFLT 273
Query: 480 YIDYLIP--IHAIPTIMVLYVTVLF 412
+ L P A+P + V + T F
Sbjct: 274 IMSELTPQTSEAVPLLGVFFHTCNF 298
>U39849-1|AAA81045.2| 332|Caenorhabditis elegans Serpentine
receptor, class h protein39 protein.
Length = 332
Score = 30.7 bits (66), Expect = 1.4
Identities = 30/101 (29%), Positives = 50/101 (49%), Gaps = 11/101 (10%)
Frame = -3
Query: 642 VDLAKNPDLY-NLVFYVPMLVL---NTFVLISFWTKPLTMSRIWFYVACVVSICF----- 490
V L +NP ++ N F++ +L L + + + + P M + C++++ F
Sbjct: 7 VSLLENPVIFRNFCFFLTILELFPTSYAMYLLIYHSPTQMKDM---KRCLINLAFWTRAM 63
Query: 489 GLCYIDYLIPIHAIPTIMVLYVTV--LFGLMTAVMANVLLI 373
L Y LIP IPT++VL V + L GL T + VL+I
Sbjct: 64 DLMYSFLLIPYFFIPTLVVLPVGLFSLIGLKTEIQLVVLVI 104
>Z50016-2|CAC42346.1| 487|Caenorhabditis elegans Hypothetical
protein T21C12.1b protein.
Length = 487
Score = 29.5 bits (63), Expect = 3.3
Identities = 21/98 (21%), Positives = 45/98 (45%), Gaps = 1/98 (1%)
Frame = -3
Query: 786 DIDTVIHNEWQIMTEQVTLDSAMWNEIIDLINSEEVLTTHLSDKMIITVDLAKNPDLYNL 607
DI V H + + TE L + I ++N + L++ ++ +N Y +
Sbjct: 194 DIMYVSHEKKSVSTESYELPQFVLQSI-KVVNHTQKLSSGEYSRLCWFFLFKRNIGFYII 252
Query: 606 VFYVPMLVLNTFVLISFW-TKPLTMSRIWFYVACVVSI 496
Y+P +++ +SFW ++ T +R+ V V+++
Sbjct: 253 QIYLPSVLIVVISWVSFWLSRDATPARVALGVTTVLTM 290
>Z50016-1|CAA90318.1| 1106|Caenorhabditis elegans Hypothetical
protein T21C12.1a protein.
Length = 1106
Score = 29.5 bits (63), Expect = 3.3
Identities = 21/98 (21%), Positives = 45/98 (45%), Gaps = 1/98 (1%)
Frame = -3
Query: 786 DIDTVIHNEWQIMTEQVTLDSAMWNEIIDLINSEEVLTTHLSDKMIITVDLAKNPDLYNL 607
DI V H + + TE L + I ++N + L++ ++ +N Y +
Sbjct: 206 DIMYVSHEKKSVSTESYELPQFVLQSI-KVVNHTQKLSSGEYSRLCWFFLFKRNIGFYII 264
Query: 606 VFYVPMLVLNTFVLISFW-TKPLTMSRIWFYVACVVSI 496
Y+P +++ +SFW ++ T +R+ V V+++
Sbjct: 265 QIYLPSVLIVVISWVSFWLSRDATPARVALGVTTVLTM 302
>AF151640-1|AAD42382.1| 487|Caenorhabditis elegans ionotropic GABA
receptor subunitUNC-49A protein.
Length = 487
Score = 29.5 bits (63), Expect = 3.3
Identities = 21/98 (21%), Positives = 45/98 (45%), Gaps = 1/98 (1%)
Frame = -3
Query: 786 DIDTVIHNEWQIMTEQVTLDSAMWNEIIDLINSEEVLTTHLSDKMIITVDLAKNPDLYNL 607
DI V H + + TE L + I ++N + L++ ++ +N Y +
Sbjct: 194 DIMYVSHEKKSVSTESYELPQFVLQSI-KVVNHTQKLSSGEYSRLCWFFLFKRNIGFYII 252
Query: 606 VFYVPMLVLNTFVLISFW-TKPLTMSRIWFYVACVVSI 496
Y+P +++ +SFW ++ T +R+ V V+++
Sbjct: 253 QIYLPSVLIVVISWVSFWLSRDATPARVALGVTTVLTM 290
>AF067216-8|AAN84852.1| 954|Caenorhabditis elegans Hypothetical
protein C35E7.5b protein.
Length = 954
Score = 29.5 bits (63), Expect = 3.3
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = -3
Query: 249 QEDDDSSYTVDSREGVEEMERSDKEIKYGDKAE 151
+ED+D DS E +E E D+E +Y D+ E
Sbjct: 897 EEDEDEEEDEDSEEDEDEEEYEDEESEYEDEEE 929
>AF067216-7|AAC17521.1| 1262|Caenorhabditis elegans Hypothetical
protein C35E7.5a protein.
Length = 1262
Score = 29.5 bits (63), Expect = 3.3
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = -3
Query: 249 QEDDDSSYTVDSREGVEEMERSDKEIKYGDKAE 151
+ED+D DS E +E E D+E +Y D+ E
Sbjct: 897 EEDEDEEEDEDSEEDEDEEEYEDEESEYEDEEE 929
>AF024501-8|AAN65318.1| 550|Caenorhabditis elegans Hypothetical
protein F39E9.12 protein.
Length = 550
Score = 29.5 bits (63), Expect = 3.3
Identities = 17/72 (23%), Positives = 33/72 (45%)
Frame = -3
Query: 684 EVLTTHLSDKMIITVDLAKNPDLYNLVFYVPMLVLNTFVLISFWTKPLTMSRIWFYVACV 505
E+L L+ +I+ LA ++N + + + L F+LI+ P + WF++ V
Sbjct: 303 EILIIVLTGLIILGSFLAAVDFIFNNFYSIVIFTLPVFILIAVIFYPPLTTYFWFWIKDV 362
Query: 504 VSICFGLCYIDY 469
+ F I +
Sbjct: 363 AEVVFEYALIPW 374
>Z49909-7|CAA90110.1| 158|Caenorhabditis elegans Hypothetical
protein C14A4.6 protein.
Length = 158
Score = 29.1 bits (62), Expect = 4.3
Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Frame = -3
Query: 630 KNPDLYNLVFYVPMLVLNTFV-LISFWTKPLTMSRIWFYVACVVSICFGLCYIDYLIPIH 454
K P+L ++ + L L ++ I F +P MS IWF + C SI F +C I L+ +
Sbjct: 10 KIPELVKILSLLGSLTLLIYLGTIKF--RPPGMSVIWFTIGC--SIVFDICTIAVLLKEY 65
Query: 453 AIPTIMV 433
I + +
Sbjct: 66 DISIMAI 72
>AF100657-5|AAC68960.1| 451|Caenorhabditis elegans Hypothetical
protein F52C12.1 protein.
Length = 451
Score = 29.1 bits (62), Expect = 4.3
Identities = 11/40 (27%), Positives = 22/40 (55%)
Frame = -3
Query: 858 PWEAHENIKIEILDETDARFEMFSDIDTVIHNEWQIMTEQ 739
P+ H K+ IL++ D RF + ++ ++W+ T+Q
Sbjct: 126 PFGTHHT-KMSILEDEDGRFHVIVSTANLVPDDWEFKTQQ 164
>Z81118-10|CAB61029.1| 657|Caenorhabditis elegans Hypothetical
protein R11G10.1a protein.
Length = 657
Score = 28.7 bits (61), Expect = 5.7
Identities = 38/196 (19%), Positives = 80/196 (40%), Gaps = 7/196 (3%)
Frame = -3
Query: 642 VDLAKNPDLYNLVFYVPMLVLNTFVLISFW-TKPLTMSRIWFYVACVVSICFGLCYIDYL 466
+ L + Y L Y+P +L +SFW + +R+ V ++++ I+
Sbjct: 460 IQLRRQFSYYLLQLYIPSCMLVIVSWVSFWIDRTAVPARVTLGVTTLLTMTTQSSGINAK 519
Query: 465 IPIHAIPTIMVLYVTVLFG-LMTAVMANVLLISNFGEALGKSSAMKQVLTCGVVRAVFCL 289
+P P + + V G MT + +L + K A K+ T R L
Sbjct: 520 LP----PVAYIKAIDVWIGACMTFIFCALLEFAWVTYIANKQDANKRART---EREKAEL 572
Query: 288 PSMKKAANG-----DYSVQEDDDSSYTVDSREGVEEMERSDKEIKYGDKAELAVVVDKIL 124
P ++ + N + + QE + + ++ R+ + + ++ DK++ A ++ +++
Sbjct: 573 PFLQNSHNDVWVPREVAEQEREVMTVRMNRRQTNSVWKWIKTKTEWNDKSKRADLISRVM 632
Query: 123 FVVYLIVFVGMLAAHY 76
F V + F HY
Sbjct: 633 FPVLFLTFNISYWTHY 648
>Z81118-1|CAB03329.1| 478|Caenorhabditis elegans Hypothetical
protein R11G10.1b protein.
Length = 478
Score = 28.7 bits (61), Expect = 5.7
Identities = 38/196 (19%), Positives = 80/196 (40%), Gaps = 7/196 (3%)
Frame = -3
Query: 642 VDLAKNPDLYNLVFYVPMLVLNTFVLISFW-TKPLTMSRIWFYVACVVSICFGLCYIDYL 466
+ L + Y L Y+P +L +SFW + +R+ V ++++ I+
Sbjct: 281 IQLRRQFSYYLLQLYIPSCMLVIVSWVSFWIDRTAVPARVTLGVTTLLTMTTQSSGINAK 340
Query: 465 IPIHAIPTIMVLYVTVLFG-LMTAVMANVLLISNFGEALGKSSAMKQVLTCGVVRAVFCL 289
+P P + + V G MT + +L + K A K+ T R L
Sbjct: 341 LP----PVAYIKAIDVWIGACMTFIFCALLEFAWVTYIANKQDANKRART---EREKAEL 393
Query: 288 PSMKKAANG-----DYSVQEDDDSSYTVDSREGVEEMERSDKEIKYGDKAELAVVVDKIL 124
P ++ + N + + QE + + ++ R+ + + ++ DK++ A ++ +++
Sbjct: 394 PFLQNSHNDVWVPREVAEQEREVMTVRMNRRQTNSVWKWIKTKTEWNDKSKRADLISRVM 453
Query: 123 FVVYLIVFVGMLAAHY 76
F V + F HY
Sbjct: 454 FPVLFLTFNISYWTHY 469
>Z77668-2|CAB61021.1| 657|Caenorhabditis elegans Hypothetical protein
R11G10.1a protein.
Length = 657
Score = 28.7 bits (61), Expect = 5.7
Identities = 38/196 (19%), Positives = 80/196 (40%), Gaps = 7/196 (3%)
Frame = -3
Query: 642 VDLAKNPDLYNLVFYVPMLVLNTFVLISFW-TKPLTMSRIWFYVACVVSICFGLCYIDYL 466
+ L + Y L Y+P +L +SFW + +R+ V ++++ I+
Sbjct: 460 IQLRRQFSYYLLQLYIPSCMLVIVSWVSFWIDRTAVPARVTLGVTTLLTMTTQSSGINAK 519
Query: 465 IPIHAIPTIMVLYVTVLFG-LMTAVMANVLLISNFGEALGKSSAMKQVLTCGVVRAVFCL 289
+P P + + V G MT + +L + K A K+ T R L
Sbjct: 520 LP----PVAYIKAIDVWIGACMTFIFCALLEFAWVTYIANKQDANKRART---EREKAEL 572
Query: 288 PSMKKAANG-----DYSVQEDDDSSYTVDSREGVEEMERSDKEIKYGDKAELAVVVDKIL 124
P ++ + N + + QE + + ++ R+ + + ++ DK++ A ++ +++
Sbjct: 573 PFLQNSHNDVWVPREVAEQEREVMTVRMNRRQTNSVWKWIKTKTEWNDKSKRADLISRVM 632
Query: 123 FVVYLIVFVGMLAAHY 76
F V + F HY
Sbjct: 633 FPVLFLTFNISYWTHY 648
>Z67737-5|CAA91541.2| 401|Caenorhabditis elegans Hypothetical
protein T01H10.6 protein.
Length = 401
Score = 28.7 bits (61), Expect = 5.7
Identities = 27/135 (20%), Positives = 62/135 (45%), Gaps = 7/135 (5%)
Frame = -3
Query: 753 IMTEQV--TLDSAMWNEIIDLINSEEVLTTHLS----DKMIITVDLAKNPDLYNLVFYVP 592
I+ E++ T+ ++ W +++ L N E L D + + + +NP Y + P
Sbjct: 212 ILQEKIIKTMGNSEW-KVVSLTNRVEQLKYDDDYGNMDLAVFEITIRRNPLYYIYMIVFP 270
Query: 591 MLVLNTFVLISFWTKPL-TMSRIWFYVACVVSICFGLCYIDYLIPIHAIPTIMVLYVTVL 415
V+N ++ + K MS++ + ++++ F L + IP ++ +Y+ +
Sbjct: 271 SFVINGISIVGIFLKSADKMSKLNVGLTNIMTMTFILGVMADKIPRTGSIPLLGIYIIIN 330
Query: 414 FGLMTAVMANVLLIS 370
+M + V+LI+
Sbjct: 331 LLIMIIAITVVVLIT 345
>Z67737-4|CAA91539.2| 401|Caenorhabditis elegans Hypothetical
protein T01H10.5 protein.
Length = 401
Score = 28.7 bits (61), Expect = 5.7
Identities = 27/135 (20%), Positives = 62/135 (45%), Gaps = 7/135 (5%)
Frame = -3
Query: 753 IMTEQV--TLDSAMWNEIIDLINSEEVLTTHLS----DKMIITVDLAKNPDLYNLVFYVP 592
I+ E++ T+ ++ W +++ L N E L D + + + +NP Y + P
Sbjct: 212 ILQEKIIKTMGNSEW-KVVSLTNRVEQLKYDDDYGNMDLAVFEITIRRNPLYYIYMIVFP 270
Query: 591 MLVLNTFVLISFWTKPL-TMSRIWFYVACVVSICFGLCYIDYLIPIHAIPTIMVLYVTVL 415
V+N ++ + K MS++ + ++++ F L + IP ++ +Y+ +
Sbjct: 271 SFVINGISIVGIFLKSADKMSKLNVGLTNIMTMTFILGVMADKIPRTGSIPLLGIYIIIN 330
Query: 414 FGLMTAVMANVLLIS 370
+M + V+LI+
Sbjct: 331 LLIMIIAITVVVLIT 345
>AL132902-4|CAC14420.1| 1913|Caenorhabditis elegans Hypothetical
protein Y71A12B.4 protein.
Length = 1913
Score = 28.7 bits (61), Expect = 5.7
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = -3
Query: 492 FGLCYIDYLIPIHAIPTIMVLYVTVLFGLMTAVMANVLL 376
FGL D + P+H +P + + +LFG+ V VL+
Sbjct: 1688 FGLVEPDSMPPLHLVPDFAKIILKLLFGIYMMVTLIVLI 1726
>AJ000538-1|CAA04171.1| 657|Caenorhabditis elegans GluClalpha2A
protein protein.
Length = 657
Score = 28.7 bits (61), Expect = 5.7
Identities = 38/196 (19%), Positives = 80/196 (40%), Gaps = 7/196 (3%)
Frame = -3
Query: 642 VDLAKNPDLYNLVFYVPMLVLNTFVLISFW-TKPLTMSRIWFYVACVVSICFGLCYIDYL 466
+ L + Y L Y+P +L +SFW + +R+ V ++++ I+
Sbjct: 460 IQLRRQFSYYLLQLYIPSCMLVIVSWVSFWIDRTAVPARVTLGVTTLLTMTTQSSGINAK 519
Query: 465 IPIHAIPTIMVLYVTVLFG-LMTAVMANVLLISNFGEALGKSSAMKQVLTCGVVRAVFCL 289
+P P + + V G MT + +L + K A K+ T R L
Sbjct: 520 LP----PVAYIKAIDVWIGACMTFIFCALLEFAWVTYIANKQDANKRART---EREKAEL 572
Query: 288 PSMKKAANG-----DYSVQEDDDSSYTVDSREGVEEMERSDKEIKYGDKAELAVVVDKIL 124
P ++ + N + + QE + + ++ R+ + + ++ DK++ A ++ +++
Sbjct: 573 PFLQNSHNDVWVPREVAEQEREVMTVRMNRRQTNSVWKWIKTKTEWNDKSKRADLISRVM 632
Query: 123 FVVYLIVFVGMLAAHY 76
F V + F HY
Sbjct: 633 FPVLFLTFNISYWTHY 648
>AJ000537-1|CAA04170.1| 478|Caenorhabditis elegans GluClalpha2B
protein protein.
Length = 478
Score = 28.7 bits (61), Expect = 5.7
Identities = 38/196 (19%), Positives = 80/196 (40%), Gaps = 7/196 (3%)
Frame = -3
Query: 642 VDLAKNPDLYNLVFYVPMLVLNTFVLISFW-TKPLTMSRIWFYVACVVSICFGLCYIDYL 466
+ L + Y L Y+P +L +SFW + +R+ V ++++ I+
Sbjct: 281 IQLRRQFSYYLLQLYIPSCMLVIVSWVSFWIDRTAVPARVTLGVTTLLTMTTQSSGINAK 340
Query: 465 IPIHAIPTIMVLYVTVLFG-LMTAVMANVLLISNFGEALGKSSAMKQVLTCGVVRAVFCL 289
+P P + + V G MT + +L + K A K+ T R L
Sbjct: 341 LP----PVAYIKAIDVWIGACMTFIFCALLEFAWVTYIANKQDANKRART---EREKAEL 393
Query: 288 PSMKKAANG-----DYSVQEDDDSSYTVDSREGVEEMERSDKEIKYGDKAELAVVVDKIL 124
P ++ + N + + QE + + ++ R+ + + ++ DK++ A ++ +++
Sbjct: 394 PFLQNSHNDVWVPREVAEQEREVMTVRMNRRQTNSVWKWIKTKTEWNDKSKRADLISRVM 453
Query: 123 FVVYLIVFVGMLAAHY 76
F V + F HY
Sbjct: 454 FPVLFLTFNISYWTHY 469
>Z30317-4|CAB54306.1| 378|Caenorhabditis elegans Hypothetical
protein T16G12.8 protein.
Length = 378
Score = 28.3 bits (60), Expect = 7.5
Identities = 15/61 (24%), Positives = 36/61 (59%), Gaps = 2/61 (3%)
Frame = -3
Query: 531 RIWFYVACVVSICFGLCYIDYLIPIHAIPTIMVLYVTVLF-GL-MTAVMANVLLISNFGE 358
R+WF++ + SI F + ++YL+ + + + + ++F G+ + A ++N L + +F +
Sbjct: 220 RVWFFMFVIGSIAFDVTKLEYLVQYGLVRHTIHIPICLIFNGIPLYASVSNNLSVFSFIK 279
Query: 357 A 355
A
Sbjct: 280 A 280
>Z81575-6|CAB04633.1| 344|Caenorhabditis elegans Hypothetical
protein R08H2.7 protein.
Length = 344
Score = 27.9 bits (59), Expect = 10.0
Identities = 11/61 (18%), Positives = 29/61 (47%)
Frame = -3
Query: 606 VFYVPMLVLNTFVLISFWTKPLTMSRIWFYVACVVSICFGLCYIDYLIPIHAIPTIMVLY 427
+F VP+ + + +I K L + + + ++C + +I +P P++ +L+
Sbjct: 34 IFAVPLWIYGFYCIIKITPKQLGSGKWDLLIVHIWTVCLDITFILLGLPYMFFPSLSILF 93
Query: 426 V 424
+
Sbjct: 94 I 94
>U80438-5|AAB37636.1| 1217|Caenorhabditis elegans Nuclear pore complex
protein protein7 protein.
Length = 1217
Score = 27.9 bits (59), Expect = 10.0
Identities = 19/59 (32%), Positives = 30/59 (50%)
Frame = +2
Query: 539 VSGFVQNDIKTNVFRTNIGT*NTRLYKSGFLAKSTVMIILSLKWVVRTSSLLMRSMISF 715
VS +KTNVF +N + +T L+ +G + ST + + K T+S + ISF
Sbjct: 927 VSTATAEAVKTNVFGSNSASASTSLFGAG--SSSTATNLFTTKPADSTTSSIFGKPISF 983
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,839,612
Number of Sequences: 27780
Number of extensions: 406204
Number of successful extensions: 1365
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 1286
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1360
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2181923744
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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