Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc11c03
(869 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ667195-1|ABG75747.1| 469|Apis mellifera cys-loop ligand-gated... 26 0.39
DQ667184-1|ABG75736.1| 489|Apis mellifera GABA-gated ion channe... 25 0.69
DQ011228-1|AAY63897.1| 486|Apis mellifera Amt-2-like protein pr... 25 1.2
AY703618-1|AAU12614.1| 136|Apis mellifera wingless protein. 24 1.6
AY222546-1|AAP69221.1| 135|Apis mellifera wingless protein. 24 1.6
DQ667193-1|ABG75745.1| 510|Apis mellifera cys-loop ligand-gated... 24 2.1
DQ667191-1|ABG75743.1| 475|Apis mellifera pH-sensitive chloride... 24 2.1
DQ667182-1|ABG75734.1| 445|Apis mellifera GABA-gated chloride c... 24 2.1
AF094822-1|AAC63381.1| 365|Apis mellifera GABA receptor Rdl sub... 24 2.1
DQ667187-1|ABG75739.1| 428|Apis mellifera histamine-gated chlor... 23 2.8
AB231585-1|BAE17127.1| 898|Apis mellifera Mahya protein. 23 3.7
DQ342041-1|ABC69933.1| 828|Apis mellifera STIP protein. 23 4.8
DQ667181-1|ABG75733.1| 445|Apis mellifera GABA-gated chloride c... 22 6.4
AY588474-1|AAT94401.1| 104|Apis mellifera defensin 2 protein. 22 6.4
AY331183-1|AAP94623.1| 953|Apis mellifera NMDA-type glutamate r... 22 6.4
DQ667188-1|ABG75740.1| 383|Apis mellifera histamine-gated chlor... 22 8.5
AY921573-1|AAX62923.1| 694|Apis mellifera D2-like dopamine rece... 22 8.5
AB167961-1|BAD51404.1| 554|Apis mellifera E74 protein. 22 8.5
>DQ667195-1|ABG75747.1| 469|Apis mellifera cys-loop ligand-gated
ion channel subunit protein.
Length = 469
Score = 26.2 bits (55), Expect = 0.39
Identities = 9/32 (28%), Positives = 18/32 (56%)
Frame = -3
Query: 648 ITVDLAKNPDLYNLVFYVPMLVLNTFVLISFW 553
IT LA+ + + +Y+P +++ +SFW
Sbjct: 223 ITFKLAREMGFFMMDYYIPSILIVVISWVSFW 254
>DQ667184-1|ABG75736.1| 489|Apis mellifera GABA-gated ion channel
protein.
Length = 489
Score = 25.4 bits (53), Expect = 0.69
Identities = 13/65 (20%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Frame = -3
Query: 687 EEVLTTHLSDKMIITVDLAKNPDLYNLVFYVPMLVLNTFVLISFW-TKPLTMSRIWFYVA 511
+E L T + ++ ++ L +N + Y+P +++ +SFW T +R+ +
Sbjct: 220 KEKLATGIYQRLSLSFKLQRNIGYFVFQTYLPSILIVMLSWVSFWINHEATSARVALGIT 279
Query: 510 CVVSI 496
V+++
Sbjct: 280 TVLTM 284
>DQ011228-1|AAY63897.1| 486|Apis mellifera Amt-2-like protein
protein.
Length = 486
Score = 24.6 bits (51), Expect = 1.2
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = -3
Query: 162 DKAELAVVVDKILFVVYLIVFVGM 91
D+A +AV +F YL+VF+G+
Sbjct: 231 DEASIAVGASGNVFAGYLLVFIGL 254
>AY703618-1|AAU12614.1| 136|Apis mellifera wingless protein.
Length = 136
Score = 24.2 bits (50), Expect = 1.6
Identities = 11/22 (50%), Positives = 12/22 (54%)
Frame = +1
Query: 280 HGRQTEDRSYDAAGQDLLHC*R 345
HGRQ D S G DL+ C R
Sbjct: 99 HGRQCNDTSIGVDGCDLMCCGR 120
>AY222546-1|AAP69221.1| 135|Apis mellifera wingless protein.
Length = 135
Score = 24.2 bits (50), Expect = 1.6
Identities = 11/22 (50%), Positives = 12/22 (54%)
Frame = +1
Query: 280 HGRQTEDRSYDAAGQDLLHC*R 345
HGRQ D S G DL+ C R
Sbjct: 100 HGRQCNDTSIGVDGCDLMCCGR 121
>DQ667193-1|ABG75745.1| 510|Apis mellifera cys-loop ligand-gated
ion channel subunit protein.
Length = 510
Score = 23.8 bits (49), Expect = 2.1
Identities = 10/52 (19%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Frame = -3
Query: 648 ITVDLAKNPDLYNLVFYVPMLVLNTFVLISFWT-KPLTMSRIWFYVACVVSI 496
++ +L ++ + + YVP +++ +SFW + T R+ + V+++
Sbjct: 236 VSFNLQRHTGYFLIQVYVPCVLIVVLSWVSFWIHREATSDRVGLGITTVLTL 287
>DQ667191-1|ABG75743.1| 475|Apis mellifera pH-sensitive chloride
channel variant 3 protein.
Length = 475
Score = 23.8 bits (49), Expect = 2.1
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = +3
Query: 153 RPCHRILFLCHSSPSLQRLPA 215
RP H +++ +P QRLPA
Sbjct: 360 RPMHNVVYRPGENPVTQRLPA 380
>DQ667182-1|ABG75734.1| 445|Apis mellifera GABA-gated chloride
channel protein.
Length = 445
Score = 23.8 bits (49), Expect = 2.1
Identities = 13/62 (20%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
Frame = -3
Query: 678 LTTHLSDKMIITVDLAKNPDLYNLVFYVPMLVLNTFVLISFW-TKPLTMSRIWFYVACVV 502
LTT ++ + ++ Y + Y+P ++ +SFW + T +R+ V V+
Sbjct: 202 LTTGNYSRLACEIQFVRSMGYYLIQIYIPSGLIVIISWVSFWLNRNATPARVALGVTTVL 261
Query: 501 SI 496
++
Sbjct: 262 TM 263
>AF094822-1|AAC63381.1| 365|Apis mellifera GABA receptor Rdl
subunit protein.
Length = 365
Score = 23.8 bits (49), Expect = 2.1
Identities = 13/62 (20%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
Frame = -3
Query: 678 LTTHLSDKMIITVDLAKNPDLYNLVFYVPMLVLNTFVLISFW-TKPLTMSRIWFYVACVV 502
LTT ++ + ++ Y + Y+P ++ +SFW + T +R+ V V+
Sbjct: 141 LTTGNYSRLACEIQFVRSMGYYLIQIYIPSGLIVIISWVSFWLNRNATPARVALGVTTVL 200
Query: 501 SI 496
++
Sbjct: 201 TM 202
>DQ667187-1|ABG75739.1| 428|Apis mellifera histamine-gated chloride
channel protein.
Length = 428
Score = 23.4 bits (48), Expect = 2.8
Identities = 19/81 (23%), Positives = 35/81 (43%), Gaps = 6/81 (7%)
Frame = -3
Query: 600 YVPMLVLNTFVLISFWTKP-LTMSRIWFYVACVVSICFGLCYIDYLIP----IHAIPTIM 436
Y+P ++ +SFW KP +R+ V ++++ +P + A+ M
Sbjct: 252 YIPTCLIVIMSWVSFWIKPEAAPARVTLGVTSLLTLSTQHAKSQASLPPVSYLKAVDAFM 311
Query: 435 -VLYVTVLFGLMTAVMANVLL 376
V V V LM + N++L
Sbjct: 312 SVCTVFVFMALMEYCLVNIVL 332
>AB231585-1|BAE17127.1| 898|Apis mellifera Mahya protein.
Length = 898
Score = 23.0 bits (47), Expect = 3.7
Identities = 12/30 (40%), Positives = 14/30 (46%)
Frame = +1
Query: 19 CKFHRIXXDRMIHRLKKSSVMRCQHSDKNN 108
C+ HR L KS +MRC H D N
Sbjct: 129 CELHRAACHSG-SSLTKSRLMRCLHHDIEN 157
>DQ342041-1|ABC69933.1| 828|Apis mellifera STIP protein.
Length = 828
Score = 22.6 bits (46), Expect = 4.8
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +1
Query: 88 QHSDKNNKVDNEKDFINDHR*FGLVTVFYF 177
QH D+ N V K+ I H GL+ F+F
Sbjct: 622 QHLDQWNWVYEWKELIPSHIMAGLLDKFFF 651
>DQ667181-1|ABG75733.1| 445|Apis mellifera GABA-gated chloride
channel protein.
Length = 445
Score = 22.2 bits (45), Expect = 6.4
Identities = 14/65 (21%), Positives = 30/65 (46%), Gaps = 5/65 (7%)
Frame = -3
Query: 675 TTHLS----DKMIITVDLAKNPDLYNLVFYVPMLVLNTFVLISFW-TKPLTMSRIWFYVA 511
T HLS ++ + ++ Y + Y+P ++ +SFW + T +R+ V
Sbjct: 199 TIHLSTGNYSRLACEIQFVRSMGYYLIQIYIPSGLIVIISWVSFWLNRNATPARVALGVT 258
Query: 510 CVVSI 496
V+++
Sbjct: 259 TVLTM 263
>AY588474-1|AAT94401.1| 104|Apis mellifera defensin 2 protein.
Length = 104
Score = 22.2 bits (45), Expect = 6.4
Identities = 7/17 (41%), Positives = 12/17 (70%)
Frame = +2
Query: 731 RVTCSVMICHSLWMTVS 781
RVTC V+ S W++++
Sbjct: 61 RVTCDVLSWQSKWLSIN 77
>AY331183-1|AAP94623.1| 953|Apis mellifera NMDA-type glutamate
receptor 1 protein.
Length = 953
Score = 22.2 bits (45), Expect = 6.4
Identities = 9/20 (45%), Positives = 11/20 (55%)
Frame = +1
Query: 217 IHCVTRVVIFLDRVIPIGGF 276
+H V V+ LDR P G F
Sbjct: 576 VHVVALVLYLLDRFSPFGRF 595
>DQ667188-1|ABG75740.1| 383|Apis mellifera histamine-gated chloride
channel protein.
Length = 383
Score = 21.8 bits (44), Expect = 8.5
Identities = 7/19 (36%), Positives = 11/19 (57%)
Frame = -3
Query: 600 YVPMLVLNTFVLISFWTKP 544
Y+P ++ I+FW KP
Sbjct: 221 YIPSALIVVMSWIAFWIKP 239
>AY921573-1|AAX62923.1| 694|Apis mellifera D2-like dopamine
receptor protein.
Length = 694
Score = 21.8 bits (44), Expect = 8.5
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +3
Query: 513 LRRTISLTSSVASSRTILRRTCLGP 587
L T++ TSS+ASS + C GP
Sbjct: 152 LNGTVNCTSSIASSGVVSAGEC-GP 175
>AB167961-1|BAD51404.1| 554|Apis mellifera E74 protein.
Length = 554
Score = 21.8 bits (44), Expect = 8.5
Identities = 7/21 (33%), Positives = 9/21 (42%)
Frame = -2
Query: 706 HRPHQQRGGSDHPFK*QDDHH 644
+ PHQ HP + HH
Sbjct: 316 YHPHQHHPSQYHPHRGSSPHH 336
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 228,025
Number of Sequences: 438
Number of extensions: 4957
Number of successful extensions: 25
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28159464
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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