Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc11c02
         (295 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY753541-1|AAV28544.1| 3398|Anopheles gambiae SGS4 protein.            22   4.1  
AB090822-1|BAC57919.1|  468|Anopheles gambiae gag-like protein p...    22   4.1  
U03849-2|AAA53489.1| 1049|Anopheles gambiae putative reverse tra...    21   9.6  
AJ271193-1|CAB66001.1| 1623|Anopheles gambiae laminin gamma 1 pr...    21   9.6  
AF364131-1|AAL35507.1|  378|Anopheles gambiae putative odorant r...    21   9.6  

>AY753541-1|AAV28544.1| 3398|Anopheles gambiae SGS4 protein.
          Length = 3398

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 12/29 (41%), Positives = 13/29 (44%)
 Frame = +3

Query: 192  TIYHIFCITYGSYFGAYRSLRYPSSSCHS 278
            TI   + I Y    G   SLRYP  S  S
Sbjct: 2062 TINRTYSIDYEYENGKLHSLRYPMDSAAS 2090


>AB090822-1|BAC57919.1|  468|Anopheles gambiae gag-like protein
           protein.
          Length = 468

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = +1

Query: 10  GRRWFPFFKTITEAP 54
           G+ W+  +K I EAP
Sbjct: 254 GKMWYQVYKQIREAP 268


>U03849-2|AAA53489.1| 1049|Anopheles gambiae putative reverse
           transcriptase protein.
          Length = 1049

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 12/38 (31%), Positives = 14/38 (36%)
 Frame = -2

Query: 240 KRRNKTHTLCRRCGRSSYHIQKSKCAQCGYPAAKLRSY 127
           KR    H   RRC RS      +    C Y   + R Y
Sbjct: 418 KRAAYRHYQTRRCQRSRSIYFDTHSLYCSYNRFRYRRY 455


>AJ271193-1|CAB66001.1| 1623|Anopheles gambiae laminin gamma 1
           precursor protein.
          Length = 1623

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 9/34 (26%), Positives = 13/34 (38%)
 Frame = -2

Query: 231 NKTHTLCRRCGRSSYHIQKSKCAQCGYPAAKLRS 130
           N+    C RC  + +  +   C  CG      RS
Sbjct: 373 NRDGPNCERCKENFFMREDGYCINCGCDPVGSRS 406


>AF364131-1|AAL35507.1|  378|Anopheles gambiae putative odorant
           receptor Or2 protein.
          Length = 378

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +2

Query: 35  KPLRKRLLTIFK*RMRPVPV 94
           +P+RKRL+ I     RP+ +
Sbjct: 327 EPIRKRLILIIARAQRPMVI 346


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 315,696
Number of Sequences: 2352
Number of extensions: 5589
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 563,979
effective HSP length: 55
effective length of database: 434,619
effective search space used: 18253998
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)