Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc11c02
         (295 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L11567-1|AAA62148.1|   97|Homo sapiens ribosomal protein L37 pro...   133   1e-31
D23661-1|BAA04888.1|   97|Homo sapiens ribosomal protein L37 pro...   133   1e-31
CR456890-1|CAG33171.1|   97|Homo sapiens RPL37 protein.               133   1e-31
BC084576-1|AAH84576.1|   97|Homo sapiens RPL37 protein protein.       133   1e-31
BC079477-1|AAH79477.1|   97|Homo sapiens ribosomal protein L37 p...   133   1e-31
AB061834-1|BAB79472.1|   97|Homo sapiens ribosomal protein L37 p...   133   1e-31
S79979-1|AAB47039.2|   97|Homo sapiens ribosomal protein L37 pro...   130   6e-31
AB007183-1|BAA25842.1|   27|Homo sapiens ribosomal protein L37 p...    30   1.5  
AL355305-3|CAI14559.1|  436|Homo sapiens protein ( Human DNA seq...    29   2.0  
AL355305-2|CAI14560.1|  360|Homo sapiens protein ( Human DNA seq...    29   2.0  
BC033448-1|AAH33448.1|  460|Homo sapiens chromosome 6 open readi...    28   4.7  
U05877-1|AAA16956.1|  337|Homo sapiens AF-1 protein.                   27   8.2  
U05875-1|AAA16955.1|  337|Homo sapiens AF-1 protein.                   27   8.2  
BC003624-1|AAH03624.1|  337|Homo sapiens interferon gamma recept...    27   8.2  
AY644470-1|AAT45458.1|  337|Homo sapiens interferon gamma recept...    27   8.2  

>L11567-1|AAA62148.1|   97|Homo sapiens ribosomal protein L37
           protein.
          Length = 97

 Score =  133 bits (321), Expect = 1e-31
 Identities = 59/89 (66%), Positives = 67/89 (75%)
 Frame = -2

Query: 267 MTKGTSSFGKRRNKTHTLCRRCGRSSYHIQKSKCAQCGYPAAKLRSYHWSVKAXXXXXXX 88
           MTKGTSSFGKRRNKTHTLCRRCG  +YH+QKS C +CGYPA + R Y+WS KA       
Sbjct: 1   MTKGTSSFGKRRNKTHTLCRRCGSKAYHLQKSTCGKCGYPAKRKRKYNWSAKAKRRNTTG 60

Query: 87  XXRMRHLKIVRRRFRNGFKEGKPTPPKKA 1
             RMRHLKIV RRFR+GF+EG    PK+A
Sbjct: 61  TGRMRHLKIVYRRFRHGFREGTTPKPKRA 89


>D23661-1|BAA04888.1|   97|Homo sapiens ribosomal protein L37
           protein.
          Length = 97

 Score =  133 bits (321), Expect = 1e-31
 Identities = 59/89 (66%), Positives = 67/89 (75%)
 Frame = -2

Query: 267 MTKGTSSFGKRRNKTHTLCRRCGRSSYHIQKSKCAQCGYPAAKLRSYHWSVKAXXXXXXX 88
           MTKGTSSFGKRRNKTHTLCRRCG  +YH+QKS C +CGYPA + R Y+WS KA       
Sbjct: 1   MTKGTSSFGKRRNKTHTLCRRCGSKAYHLQKSTCGKCGYPAKRKRKYNWSAKAKRRNTTG 60

Query: 87  XXRMRHLKIVRRRFRNGFKEGKPTPPKKA 1
             RMRHLKIV RRFR+GF+EG    PK+A
Sbjct: 61  TGRMRHLKIVYRRFRHGFREGTTPKPKRA 89


>CR456890-1|CAG33171.1|   97|Homo sapiens RPL37 protein.
          Length = 97

 Score =  133 bits (321), Expect = 1e-31
 Identities = 59/89 (66%), Positives = 67/89 (75%)
 Frame = -2

Query: 267 MTKGTSSFGKRRNKTHTLCRRCGRSSYHIQKSKCAQCGYPAAKLRSYHWSVKAXXXXXXX 88
           MTKGTSSFGKRRNKTHTLCRRCG  +YH+QKS C +CGYPA + R Y+WS KA       
Sbjct: 1   MTKGTSSFGKRRNKTHTLCRRCGSKAYHLQKSTCGKCGYPAKRKRKYNWSAKAKRRNTTG 60

Query: 87  XXRMRHLKIVRRRFRNGFKEGKPTPPKKA 1
             RMRHLKIV RRFR+GF+EG    PK+A
Sbjct: 61  TGRMRHLKIVYRRFRHGFREGTTPKPKRA 89


>BC084576-1|AAH84576.1|   97|Homo sapiens RPL37 protein protein.
          Length = 97

 Score =  133 bits (321), Expect = 1e-31
 Identities = 59/89 (66%), Positives = 67/89 (75%)
 Frame = -2

Query: 267 MTKGTSSFGKRRNKTHTLCRRCGRSSYHIQKSKCAQCGYPAAKLRSYHWSVKAXXXXXXX 88
           MTKGTSSFGKRRNKTHTLCRRCG  +YH+QKS C +CGYPA + R Y+WS KA       
Sbjct: 1   MTKGTSSFGKRRNKTHTLCRRCGSKAYHLQKSTCGKCGYPAKRKRKYNWSAKAKRRNTTG 60

Query: 87  XXRMRHLKIVRRRFRNGFKEGKPTPPKKA 1
             RMRHLKIV RRFR+GF+EG    PK+A
Sbjct: 61  TGRMRHLKIVYRRFRHGFREGTTPKPKRA 89


>BC079477-1|AAH79477.1|   97|Homo sapiens ribosomal protein L37
           protein.
          Length = 97

 Score =  133 bits (321), Expect = 1e-31
 Identities = 59/89 (66%), Positives = 67/89 (75%)
 Frame = -2

Query: 267 MTKGTSSFGKRRNKTHTLCRRCGRSSYHIQKSKCAQCGYPAAKLRSYHWSVKAXXXXXXX 88
           MTKGTSSFGKRRNKTHTLCRRCG  +YH+QKS C +CGYPA + R Y+WS KA       
Sbjct: 1   MTKGTSSFGKRRNKTHTLCRRCGSKAYHLQKSTCGKCGYPAKRKRKYNWSAKAKRRNTTG 60

Query: 87  XXRMRHLKIVRRRFRNGFKEGKPTPPKKA 1
             RMRHLKIV RRFR+GF+EG    PK+A
Sbjct: 61  TGRMRHLKIVYRRFRHGFREGTTPKPKRA 89


>AB061834-1|BAB79472.1|   97|Homo sapiens ribosomal protein L37
           protein.
          Length = 97

 Score =  133 bits (321), Expect = 1e-31
 Identities = 59/89 (66%), Positives = 67/89 (75%)
 Frame = -2

Query: 267 MTKGTSSFGKRRNKTHTLCRRCGRSSYHIQKSKCAQCGYPAAKLRSYHWSVKAXXXXXXX 88
           MTKGTSSFGKRRNKTHTLCRRCG  +YH+QKS C +CGYPA + R Y+WS KA       
Sbjct: 1   MTKGTSSFGKRRNKTHTLCRRCGSKAYHLQKSTCGKCGYPAKRKRKYNWSAKAKRRNTTG 60

Query: 87  XXRMRHLKIVRRRFRNGFKEGKPTPPKKA 1
             RMRHLKIV RRFR+GF+EG    PK+A
Sbjct: 61  TGRMRHLKIVYRRFRHGFREGTTPKPKRA 89


>S79979-1|AAB47039.2|   97|Homo sapiens ribosomal protein L37
           protein.
          Length = 97

 Score =  130 bits (315), Expect = 6e-31
 Identities = 58/89 (65%), Positives = 66/89 (74%)
 Frame = -2

Query: 267 MTKGTSSFGKRRNKTHTLCRRCGRSSYHIQKSKCAQCGYPAAKLRSYHWSVKAXXXXXXX 88
           MTKGTSSFGKRRNKTHTLCRRCG  +YH+QKS C +CGYPA + R Y+WS KA       
Sbjct: 1   MTKGTSSFGKRRNKTHTLCRRCGSKAYHLQKSTCGKCGYPAKRKRKYNWSAKAKRRNTTG 60

Query: 87  XXRMRHLKIVRRRFRNGFKEGKPTPPKKA 1
             RM HLKIV RRFR+GF+EG    PK+A
Sbjct: 61  TGRMSHLKIVYRRFRHGFREGTTPKPKRA 89


>AB007183-1|BAA25842.1|   27|Homo sapiens ribosomal protein L37
           protein.
          Length = 27

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 15/27 (55%), Positives = 16/27 (59%)
 Frame = -2

Query: 126 HWSVKAXXXXXXXXXRMRHLKIVRRRF 46
           +WS KA         RMRHLKIV RRF
Sbjct: 1   NWSAKAKRRNTTGTGRMRHLKIVYRRF 27


>AL355305-3|CAI14559.1|  436|Homo sapiens protein ( Human DNA
           sequence from clone RP11-487F23 on chromosome 6. ).
          Length = 436

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = -1

Query: 175 IKMRPMWISCSKITILPLVSEG*AQEDYW 89
           IK RP W  CSK   LP V+E  ++   W
Sbjct: 253 IKRRPPWQICSKFGALPFVAEKPSRTTSW 281


>AL355305-2|CAI14560.1|  360|Homo sapiens protein ( Human DNA
           sequence from clone RP11-487F23 on chromosome 6. ).
          Length = 360

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = -1

Query: 175 IKMRPMWISCSKITILPLVSEG*AQEDYW 89
           IK RP W  CSK   LP V+E  ++   W
Sbjct: 177 IKRRPPWQICSKFGALPFVAEKPSRTTSW 205


>BC033448-1|AAH33448.1|  460|Homo sapiens chromosome 6 open reading
           frame 182 protein.
          Length = 460

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 12/21 (57%), Positives = 13/21 (61%)
 Frame = -1

Query: 175 IKMRPMWISCSKITILPLVSE 113
           IK RP W  CSK   LP V+E
Sbjct: 253 IKRRPPWQICSKFGALPFVAE 273


>U05877-1|AAA16956.1|  337|Homo sapiens AF-1 protein.
          Length = 337

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 7/19 (36%), Positives = 14/19 (73%)
 Frame = +1

Query: 19  WFPFFKTITEAPPDNLQMT 75
           WF  ++ +T  PP+N+++T
Sbjct: 131 WFQHYRNVTVGPPENIEVT 149


>U05875-1|AAA16955.1|  337|Homo sapiens AF-1 protein.
          Length = 337

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 7/19 (36%), Positives = 14/19 (73%)
 Frame = +1

Query: 19  WFPFFKTITEAPPDNLQMT 75
           WF  ++ +T  PP+N+++T
Sbjct: 131 WFQHYRNVTVGPPENIEVT 149


>BC003624-1|AAH03624.1|  337|Homo sapiens interferon gamma receptor
           2 (interferon gamma transducer 1) protein.
          Length = 337

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 7/19 (36%), Positives = 14/19 (73%)
 Frame = +1

Query: 19  WFPFFKTITEAPPDNLQMT 75
           WF  ++ +T  PP+N+++T
Sbjct: 131 WFQHYRNVTVGPPENIEVT 149


>AY644470-1|AAT45458.1|  337|Homo sapiens interferon gamma receptor
           2 (interferon gamma transducer 1) protein.
          Length = 337

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 7/19 (36%), Positives = 14/19 (73%)
 Frame = +1

Query: 19  WFPFFKTITEAPPDNLQMT 75
           WF  ++ +T  PP+N+++T
Sbjct: 131 WFQHYRNVTVGPPENIEVT 149


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 44,304,146
Number of Sequences: 237096
Number of extensions: 782171
Number of successful extensions: 1603
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1599
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1603
length of database: 76,859,062
effective HSP length: 74
effective length of database: 59,313,958
effective search space used: 1364221034
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)