Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc11c01
         (912 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0591 - 30183105-30183869                                         29   5.1  
02_04_0132 - 20058638-20058907                                         29   5.1  
06_01_1126 - 9277885-9277935,9278129-9278209,9278297-9278350,927...    29   6.8  
01_07_0125 - 41220550-41220555,41220656-41220725,41220811-41222165     29   6.8  
12_01_0237 + 1782593-1782778,1784942-1784996,1785086-1787028,178...    28   9.0  
11_01_0240 + 1852186-1852371,1854183-1854237,1854391-1856267,185...    28   9.0  
04_04_1120 + 31037811-31038813,31038903-31038991,31039094-310391...    28   9.0  
01_07_0264 - 42388455-42388565,42388656-42388688,42388792-423889...    28   9.0  

>02_05_0591 - 30183105-30183869
          Length = 254

 Score = 29.1 bits (62), Expect = 5.1
 Identities = 13/23 (56%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
 Frame = -2

Query: 626 SGSG-VGTPQRLSFHHEQVFGRK 561
           SGSG  GTPQ ++F H+  FG K
Sbjct: 232 SGSGGAGTPQTVNFEHQHPFGYK 254


>02_04_0132 - 20058638-20058907
          Length = 89

 Score = 29.1 bits (62), Expect = 5.1
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +3

Query: 243 RPFERPWC*WFATCRRPPFA 302
           +PF  PWC +   C +PPF+
Sbjct: 14  KPFVAPWCRYPLLCNQPPFS 33


>06_01_1126 -
           9277885-9277935,9278129-9278209,9278297-9278350,
           9278433-9278564,9278641-9278715,9279056-9279133,
           9279215-9279327,9279421-9279535,9280565-9280754,
           9281355-9281464,9281559-9281654,9281756-9281818,
           9281911-9281988,9282452-9282564,9282664-9282721,
           9282797-9282920,9282999-9283060,9283131-9283195,
           9283264-9283324,9284242-9284307,9284472-9284531,
           9284830-9284960,9285517-9285592,9285701-9285769,
           9286065-9286112,9286552-9286671,9286918-9287034,
           9287290-9287405,9288348-9288519,9289057-9289100,
           9290359-9290712,9291680-9291806
          Length = 1072

 Score = 28.7 bits (61), Expect = 6.8
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = +3

Query: 321 PAVCCGGFFVFATCCCQCPYHRYHLLKQ 404
           P      F   A+CCC+ P H+ HL  Q
Sbjct: 105 PVDATAPFVASASCCCRHPVHQQHLRLQ 132


>01_07_0125 - 41220550-41220555,41220656-41220725,41220811-41222165
          Length = 476

 Score = 28.7 bits (61), Expect = 6.8
 Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
 Frame = +3

Query: 312 KGLPAVCCG--GFFVFATCCCQCPYHRYHLLKQSWLSSISRDISLS 443
           K LP + CG  G ++F T   +  + +YHL  ++W   I   I  S
Sbjct: 386 KALPTIFCGDTGGYIFHTPPTELFFTQYHLSSRTWSPLIDGSIGNS 431


>12_01_0237 +
           1782593-1782778,1784942-1784996,1785086-1787028,
           1787103-1787261,1787432-1787603,1787705-1788003,
           1788278-1788583
          Length = 1039

 Score = 28.3 bits (60), Expect = 9.0
 Identities = 11/44 (25%), Positives = 24/44 (54%)
 Frame = +2

Query: 260 VVLMVCNMSTAAICVCAEGFAGGXXXXXXXVCDMLLPVSISSIS 391
           ++LMVC + + A+ +  EG+  G       +  + L V ++++S
Sbjct: 177 IILMVCALLSVAVGLATEGWPKGMYDGLGIILSIFLVVMVTAVS 220


>11_01_0240 +
           1852186-1852371,1854183-1854237,1854391-1856267,
           1856342-1856500,1856692-1856863,1856965-1857263,
           1857539-1857844
          Length = 1017

 Score = 28.3 bits (60), Expect = 9.0
 Identities = 11/44 (25%), Positives = 24/44 (54%)
 Frame = +2

Query: 260 VVLMVCNMSTAAICVCAEGFAGGXXXXXXXVCDMLLPVSISSIS 391
           ++LMVC + + A+ +  EG+  G       +  + L V ++++S
Sbjct: 155 IILMVCALLSVAVGLATEGWPKGMYDGLGIILSIFLVVMVTAVS 198


>04_04_1120 +
           31037811-31038813,31038903-31038991,31039094-31039163,
           31039270-31039353,31039452-31039528,31039631-31039712,
           31039847-31039929,31040270-31040333,31040435-31040566,
           31040674-31040777,31040901-31040996,31041144-31041251
          Length = 663

 Score = 28.3 bits (60), Expect = 9.0
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +2

Query: 788 ETVALRVQNTQHALVILLAQSDGCFFAFFDKWHAHVA 898
           E  A  +++     V+LL    GC+FA    WHA +A
Sbjct: 81  EAAAKALRSRSRRPVVLLVDRGGCYFA-LKTWHAQLA 116


>01_07_0264 -
           42388455-42388565,42388656-42388688,42388792-42388905,
           42389011-42389100,42389173-42389268,42389363-42389404,
           42389498-42389608,42392258-42392440,42392518-42392961
          Length = 407

 Score = 28.3 bits (60), Expect = 9.0
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = +2

Query: 572 ILAHDETTNVAEFQLRYRIRF 634
           +L+HDE   V E   RYRIRF
Sbjct: 126 LLSHDEMIEVKERHARYRIRF 146


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,862,184
Number of Sequences: 37544
Number of extensions: 456655
Number of successful extensions: 1235
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1202
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1234
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2588957540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)