Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc11b24
         (790 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ301655-1|CAC35008.1| 1433|Anopheles gambiae putative epidermal...    26   1.5  
U03849-2|AAA53489.1| 1049|Anopheles gambiae putative reverse tra...    25   2.7  
CR954257-14|CAJ14165.1| 1726|Anopheles gambiae BEL12_AG transpos...    25   3.5  
AJ297933-1|CAC35453.2|  392|Anopheles gambiae Ag9 protein protein.     23   8.1  

>AJ301655-1|CAC35008.1| 1433|Anopheles gambiae putative epidermal
           growth factor receptorprotein.
          Length = 1433

 Score = 25.8 bits (54), Expect = 1.5
 Identities = 15/38 (39%), Positives = 23/38 (60%)
 Frame = -3

Query: 377 AYHVARVQHIHTLRLCSVCG*ARGVTSHCMRIMKSLPL 264
           AY +A V+H + L+L +VC     +TS  M I + +PL
Sbjct: 885 AYIMASVEHPNLLKLLAVC-----MTSQMMLITQLMPL 917


>U03849-2|AAA53489.1| 1049|Anopheles gambiae putative reverse
           transcriptase protein.
          Length = 1049

 Score = 25.0 bits (52), Expect = 2.7
 Identities = 11/48 (22%), Positives = 20/48 (41%)
 Frame = -2

Query: 747 RCLAPLRWKGNFTFLDKCYSRYQKWYLFTAR*VLCNVCLLFCIGYVQC 604
           +  AP+   G+ TFL  C   +  W       +    C  +C+ + +C
Sbjct: 778 KIFAPINNTGDCTFLQDCIEIFCSWCKRNGLTICIEKC--YCVSFSRC 823


>CR954257-14|CAJ14165.1| 1726|Anopheles gambiae BEL12_AG transposon
           polyprotein protein.
          Length = 1726

 Score = 24.6 bits (51), Expect = 3.5
 Identities = 11/42 (26%), Positives = 21/42 (50%)
 Frame = -2

Query: 618 GYVQCAFCSMSKINSMCD*RDYIELLNIDVTVQNHALFGFRC 493
           GY++C  C+      +C+  +   ++N +  V+ H L  F C
Sbjct: 340 GYLKCPLCNEQHPLHVCERFERASVINREEIVRKHGLC-FNC 380


>AJ297933-1|CAC35453.2|  392|Anopheles gambiae Ag9 protein protein.
          Length = 392

 Score = 23.4 bits (48), Expect = 8.1
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = +3

Query: 510 RHGFVQ*RQCSRARYN 557
           R  F   R+CSRARYN
Sbjct: 318 RRWFFLPRRCSRARYN 333


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 748,906
Number of Sequences: 2352
Number of extensions: 13963
Number of successful extensions: 18
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 82744797
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)