Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc11b22
(828 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0481 - 29646245-29646371,29646474-29646556,29646672-296467... 33 0.21
02_04_0524 + 23671376-23671603,23672159-23672392 33 0.28
02_04_0157 + 20388761-20388763,20389807-20389935,20390206-203903... 33 0.28
03_06_0205 - 32347636-32347646,32347762-32347801,32347959-323480... 32 0.48
09_06_0001 + 20114108-20115686,20115813-20115928,20116416-201173... 31 1.1
04_04_0122 - 22918146-22918220,22918455-22918496,22918586-229186... 31 1.1
04_03_0795 - 19704354-19704464,19705152-19705214,19705298-197053... 31 1.5
01_06_0195 + 27379266-27379300,27379870-27382174 30 2.0
01_03_0263 + 14397549-14412911,14413023-14413787,14413950-14414132 30 2.6
03_06_0337 + 33224333-33224479,33224603-33224663,33224740-332247... 29 3.4
04_03_0446 - 16012926-16013042,16013266-16013469 29 4.5
03_01_0196 + 1559190-1560395 29 4.5
03_02_0114 + 5704002-5704037,5704547-5704666,5705040-5705076,570... 29 6.0
01_01_0128 - 1167904-1168749,1168790-1168863,1169419-1169491,117... 29 6.0
12_02_0318 - 17457182-17462232,17462745-17462955,17463356-174634... 28 7.9
11_01_0442 - 3369827-3370168,3370608-3372616,3372953-3373277,337... 28 7.9
07_03_1424 - 26474464-26474514,26474549-26474635,26474905-264750... 28 7.9
02_02_0536 + 11304298-11304400,11304731-11305797,11306026-113064... 28 7.9
01_06_0117 + 26605186-26605443,26605540-26605583,26605659-266057... 28 7.9
>01_06_0481 - 29646245-29646371,29646474-29646556,29646672-29646752,
29646843-29646899,29647007-29647094,29647304-29647374,
29647457-29647585,29647662-29648051,29648332-29648517,
29648612-29648692,29648787-29648879,29648966-29649086,
29649200-29649409,29649560-29649727,29649898-29650065,
29650144-29650311,29650453-29650620,29650738-29650905,
29651023-29651190,29651567-29651734,29652391-29652558,
29652645-29652812,29655720-29655887,29656069-29656236,
29656391-29656558,29656670-29656837,29657525-29657664,
29658033-29658221,29658243-29658315,29658379-29658452,
29658535-29658654,29658718-29658738,29658794-29658999,
29659094-29659271,29660066-29660126,29660232-29660341,
29660427-29660558,29661091-29661258,29661339-29661465,
29661794-29661831,29663321-29663422,29663505-29663562,
29663659-29663760,29663844-29663990,29664098-29664234,
29664313-29664462,29664561-29664720,29665820-29665878,
29666025-29666181,29666288-29666433,29666523-29666666,
29667242-29667376
Length = 2344
Score = 33.5 bits (73), Expect = 0.21
Identities = 23/107 (21%), Positives = 45/107 (42%)
Frame = -2
Query: 692 LLEEVIPQVLCTGKYDPAIKQQEEKNKQLVTKLIATFTEHTNALQAVVAQKTEELFKKQE 513
LL++ I ++ A+ E + K + K + E L K E+ KK E
Sbjct: 1654 LLQDTIERIGENSTIKDALLLSERQEKDAIKKELVEAGERNEEL----IMKIEDTDKKIE 1709
Query: 512 FIERIIAIKDKQIEAKDLQVTRVMTDLNRMYTGFQETMQRKDEMMHK 372
++ I + IEAKD+ + + + + E ++ +E++ K
Sbjct: 1710 HLQNAIIKLEGDIEAKDISLEAAREENDTIRKSLAEAQEKNEELLRK 1756
>02_04_0524 + 23671376-23671603,23672159-23672392
Length = 153
Score = 33.1 bits (72), Expect = 0.28
Identities = 17/52 (32%), Positives = 27/52 (51%)
Frame = +3
Query: 183 VLLAFHVRLLAGNSRKRSAVARHAQHRMFALVRGVLNRAIRQIYHFGN*IGD 338
+L+AF LL G + R A + A + + +G + I IY+FG+ I D
Sbjct: 9 ILVAFLALLLVGTCQARPAPGKAASSSLSSAAKGAVVDGITDIYNFGDSISD 60
>02_04_0157 + 20388761-20388763,20389807-20389935,20390206-20390349,
20390690-20390835,20390915-20391071,20391312-20391370,
20391466-20391664,20392232-20392381,20392471-20392607,
20392717-20392863,20392975-20393076,20395655-20395712,
20395816-20395917,20396236-20396273,20396409-20396535,
20397092-20397259,20397356-20397487,20400222-20400331,
20400400-20400460,20400929-20401106,20401194-20401399,
20401552-20401671,20402523-20402621,20404177-20404386,
20404704-20404843,20404945-20405053,20405351-20405431,
20405523-20405693,20405825-20405974,20407029-20407202,
20407453-20407479,20407688-20407758,20407843-20407942,
20408305-20408361,20409457-20409513,20409656-20409736,
20410336-20410421,20410535-20410649
Length = 1466
Score = 33.1 bits (72), Expect = 0.28
Identities = 36/178 (20%), Positives = 80/178 (44%), Gaps = 3/178 (1%)
Frame = -2
Query: 821 QTAWQSKAIRCILQPHTVLITKSGVIQLIMKSKLPYAIELQEWLLEEVIPQVLCTGKYDP 642
Q AW+ + R L+ + ++G +Q K+KL +E W L+ + +
Sbjct: 874 QCAWRGRLARRELRKLKMAAKETGALQAA-KNKLEKQVEELTWRLQL---EKRMRVDMEE 929
Query: 641 AIKQQEEKNKQLVTKLIATFTEHTNALQAVVAQKTEELFKKQEFIERIIAIKDKQIEAKD 462
A Q+ +K +Q + +L E + L+ Q+T + ++ + + + +
Sbjct: 930 AKSQENKKLQQKLQELELQSNETKDLLKR--EQETAKAAWEKAALVPEVQVDTTLVNELT 987
Query: 461 LQVTRVMTDLNRMYTGFQETMQRKDEMMHKKDELLQV---KDTQVSNLIAKMIDLSDR 297
+ ++ T + + T ET QR DE+ ++ELL+ +++++ L M+ L ++
Sbjct: 988 AENEKLKTLVASLETKIDETEQRFDEVKKAREELLKKATDAESKINGLTNTMLSLQEK 1045
>03_06_0205 -
32347636-32347646,32347762-32347801,32347959-32348060,
32348473-32348599,32348893-32350835,32351347-32351367
Length = 747
Score = 32.3 bits (70), Expect = 0.48
Identities = 28/100 (28%), Positives = 44/100 (44%), Gaps = 4/100 (4%)
Frame = -2
Query: 443 MTDLNRMYT-GFQETMQRKDEMMHKKDELLQVKDTQVSNLIAKMIDLSDRAVQYPADKRK 267
M+ L RM+ QE + + +K L D + L K+ + R Q + K
Sbjct: 331 MSKLKRMHELDLQEKTEELFKFKREKGLLTLKNDVEFEPLRKKIPQIISRMDQIISKNIK 390
Query: 266 HPVLCVTRDGTTFTAITGQK---TYVESQKHKRNIDAANI 156
P LC+T DG I+ ++ Y E+Q H R + A N+
Sbjct: 391 MPSLCMTNDGLDERCISAKRIDSLYYENQ-HLRGLLADNM 429
>09_06_0001 + 20114108-20115686,20115813-20115928,20116416-20117394,
20118820-20119082
Length = 978
Score = 31.1 bits (67), Expect = 1.1
Identities = 39/162 (24%), Positives = 73/162 (45%), Gaps = 6/162 (3%)
Frame = -2
Query: 821 QTAWQSKAIRCILQPHTVLITKSGVIQLIMKSKLPYAIELQEWLLE--EVI--PQVL--C 660
Q + K R I+ V + S +IQ K+ L+E++L+ E I P+
Sbjct: 569 QVQMKKKMQRLIVAKTVVALVMSQIIQKKSLMKIYSLTSLEEFVLDTFETIQDPEEKRRV 628
Query: 659 TGKYDPAIKQQEEKNKQLVTKLIATFTEHTNALQAVVAQKTEELFKKQEFIERIIAIKDK 480
K+ +K ++K K+ + K + F + + QK KK E + I +D+
Sbjct: 629 LEKFLSRVKTDKDKLKKDIQK--SKFLSIDEVFKRLNEQK-----KKNEKPDLISLFEDQ 681
Query: 479 QIEAKDLQVTRVMTDLNRMYTGFQETMQRKDEMMHKKDELLQ 354
+I +DL+ R + + GF M+ KDE + + D++++
Sbjct: 682 KIMKQDLEEIRKRLYMLELKEGFH--MEEKDEPIQEDDQVVE 721
>04_04_0122 -
22918146-22918220,22918455-22918496,22918586-22918642,
22918784-22918844,22919219-22919280,22919372-22919485,
22919565-22919636,22919824-22919874,22919990-22920112,
22921261-22921383
Length = 259
Score = 31.1 bits (67), Expect = 1.1
Identities = 48/201 (23%), Positives = 85/201 (42%), Gaps = 2/201 (0%)
Frame = -2
Query: 644 PAIKQQEEKNKQLVTKLIATFTEHTNALQAVVAQKTEELFKKQEFIERIIAIKDKQIEAK 465
P ++ + KQ+ + F H L ++ + +++FK E I+ + D +
Sbjct: 63 PVYVRRNKIIKQIPDFWLTAFLSHP-MLGELLTEDDQKIFKHLESID----VDDSEDIKS 117
Query: 464 DLQVTRVMTDLNRMYTGFQETMQRKDEMMHKKDELLQVKDTQVSNLIAKMIDLS-DRAVQ 288
+T +T Y F++T K DE ++VK T + K +D++ DRA
Sbjct: 118 GYSIT--LTFSPNPY--FEDTKLTKTYSF-SDDEAVKVKATSIR--WKKGMDIANDRAYT 170
Query: 287 YPADKRKHPVLCVTRDGTTFTAITGQKTYVESQKHKRNIDAANIVVENIRPNPTVDWNNA 108
DKR + D + FT +K S H + A+++ E++ PNP +NN
Sbjct: 171 KKGDKR------ILIDESFFTWFNSEKN--RSFAHGAMDEVADVIKEDLWPNPLKYFNNE 222
Query: 107 -TDRLQSKRSKRSISFDSLEE 48
+ L+ +S D EE
Sbjct: 223 FEEELELLDDDDEVSDDDDEE 243
>04_03_0795 -
19704354-19704464,19705152-19705214,19705298-19705378,
19705468-19705623,19705711-19705785,19706477-19706587,
19707206-19707304,19707453-19707546,19707779-19707838,
19709262-19709334,19711448-19711490,19711533-19711606,
19711985-19712075,19712170-19712214,19712533-19712589,
19713440-19713544,19713817-19713932,19714625-19714634,
19714810-19714920,19715502-19715594,19715664-19715690,
19715736-19715798,19716326-19716451,19716812-19716949,
19717164-19717832,19717949-19718123,19718269-19718450
Length = 1015
Score = 30.7 bits (66), Expect = 1.5
Identities = 15/25 (60%), Positives = 19/25 (76%)
Frame = -2
Query: 329 LIAKMIDLSDRAVQYPADKRKHPVL 255
LIA+++ LSDRA AD+R HPVL
Sbjct: 33 LIAELLLLSDRAPSQFADRRFHPVL 57
>01_06_0195 + 27379266-27379300,27379870-27382174
Length = 779
Score = 30.3 bits (65), Expect = 2.0
Identities = 13/24 (54%), Positives = 14/24 (58%)
Frame = +2
Query: 269 CACPRGIEPRDPTNLSFWQLNWRP 340
C+CP G E RDPTN W RP
Sbjct: 293 CSCPPGYEMRDPTN---WSRGCRP 313
>01_03_0263 + 14397549-14412911,14413023-14413787,14413950-14414132
Length = 5436
Score = 29.9 bits (64), Expect = 2.6
Identities = 23/83 (27%), Positives = 43/83 (51%)
Frame = -2
Query: 506 ERIIAIKDKQIEAKDLQVTRVMTDLNRMYTGFQETMQRKDEMMHKKDELLQVKDTQVSNL 327
E I+++ + IE K + ++L ++YTG ++ +K+E + D++ +KD + N
Sbjct: 498 ENSISLQVETIEDKTNFMPEKFSELEKVYTGCEKLNNKKEE-QEENDKINTLKDEKDHNT 556
Query: 326 IAKMIDLSDRAVQYPADKRKHPV 258
+ D VQ P DK K+ V
Sbjct: 557 F-EHTDSIKGEVQLP-DKDKNLV 577
>03_06_0337 +
33224333-33224479,33224603-33224663,33224740-33224776,
33225237-33225367,33225447-33225590,33225686-33225776,
33225973-33226106,33226234-33226373,33227328-33227426,
33227520-33227602,33227690-33227744,33227826-33227937,
33228274-33228766,33228881-33229094,33229203-33229273,
33229733-33229901,33229991-33230120,33230556-33230968,
33231059-33231262
Length = 975
Score = 29.5 bits (63), Expect = 3.4
Identities = 24/91 (26%), Positives = 42/91 (46%), Gaps = 1/91 (1%)
Frame = -2
Query: 536 EELFKKQEFIERIIAIKDKQIEAKDLQVTRVMTDLNRMYTGFQETMQRKDEMMHKKD-EL 360
E L KK+ ++ A D EAKD T D N + + + E HK D E
Sbjct: 118 ERLQKKENAVQAKDA--DATNEAKDADATNEAKDANATNEAYATSTAKHKETSHKTDTEP 175
Query: 359 LQVKDTQVSNLIAKMIDLSDRAVQYPADKRK 267
LQ+ + + ++K + +S+ A ++K++
Sbjct: 176 LQLLKKETT--LSKEVSISNTAKVKSSEKQR 204
>04_03_0446 - 16012926-16013042,16013266-16013469
Length = 106
Score = 29.1 bits (62), Expect = 4.5
Identities = 11/39 (28%), Positives = 19/39 (48%)
Frame = -1
Query: 294 GSIPRGQAQTSGAVRDARRHYVYGYYRPKDVRGKPKAQT 178
G +PRG + G + + RR G +R + G P ++
Sbjct: 22 GGVPRGAEVSGGGLEEERRRQAKGSWRWRQAEGSPAGRS 60
>03_01_0196 + 1559190-1560395
Length = 401
Score = 29.1 bits (62), Expect = 4.5
Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Frame = -1
Query: 270 QTSGAVRDARR-HYVYGYYRPKDVRGKPKAQT*HRRCQHCGGE 145
Q+ +++A R H + Y+ PK +RG P A T GG+
Sbjct: 80 QSLAGIKNALRLHAILDYFDPKKIRGLPDADTMTDTLYQAGGD 122
>03_02_0114 + 5704002-5704037,5704547-5704666,5705040-5705076,
5705905-5705981,5706642-5706755,5706902-5706969,
5707051-5707129,5707367-5707511,5707627-5707731,
5707917-5707994,5708192-5708247,5708533-5708651,
5708853-5709096,5709203-5709385,5709956-5710264,
5710350-5710399,5711042-5711102,5711184-5711267,
5711461-5711577,5711665-5711831,5711938-5712010,
5712497-5712581,5712693-5712886,5713073-5713228
Length = 918
Score = 28.7 bits (61), Expect = 6.0
Identities = 42/195 (21%), Positives = 82/195 (42%), Gaps = 4/195 (2%)
Frame = -2
Query: 647 DPAIKQQEEKNKQLVTKLIATFTEHTNALQAVVAQKTEELFKKQEFIERIIA-IKDKQIE 471
D + ++ E NK + I + + LQA + ++ EEL +++ +E+ + ++D+ +
Sbjct: 606 DETLIEKLENNKTDLQSKITKEVKENSILQASLGRRKEELHERRLALEKEVENLRDQLQK 665
Query: 470 AKDLQVT--RVMTDLNRMYTGFQETMQRKDEMMHKKD-ELLQVKDTQVSNLIAKMIDLSD 300
+ L+ + + +L R F T+ K K D E + + + NL K+ DL
Sbjct: 666 ERKLRASLESGLMNLRRGQVSFPSTIDSKT----KADLEEVATAEADILNLKQKVSDL-- 719
Query: 299 RAVQYPADKRKHPVLCVTRDGTTFTAITGQKTYVESQKHKRNIDAANIVVENIRPNPTVD 120
R + LC D ++ K + + Q N N+ PN D
Sbjct: 720 RGQLNNNVQMSSTSLC---DSCNKRLLSTDKLFEDEQ---------NTSPSNVGPNSMSD 767
Query: 119 WNNATDRLQSKRSKR 75
+ATD ++S++
Sbjct: 768 MASATDMADIEQSRK 782
>01_01_0128 -
1167904-1168749,1168790-1168863,1169419-1169491,
1171148-1171398,1171442-1171687,1172220-1172415,
1172796-1172876,1172966-1173169,1173671-1173880,
1173953-1174174,1174437-1174480,1174974-1175052,
1175066-1175227,1175337-1175564,1175786-1175815,
1175905-1176273,1176356-1176571,1177202-1177683,
1177930-1177975
Length = 1352
Score = 28.7 bits (61), Expect = 6.0
Identities = 28/122 (22%), Positives = 58/122 (47%), Gaps = 1/122 (0%)
Frame = -2
Query: 644 PAIKQQEEKNKQLVTKLIATFTEHTNALQAVVAQKTEELFKKQEFIERIIAIKDKQIEAK 465
P +K+ + + L + EH L A+K+ + K++E +ER I K+K+ E K
Sbjct: 579 PPVKKPSKLGENLTSLAAVVENEHKRLL----ARKSI-IEKRKEDLERQILEKEKEEEKK 633
Query: 464 DLQVTRVMTDLNRMYTGFQETMQRKDEMMHKKDELLQVKDTQVSNLIAKMI-DLSDRAVQ 288
L V + + R+ + R+ E + + +L++ + + L+ K I +++ R +
Sbjct: 634 RLSVLKKSAEDERIRL-LNDVKLREQERIRR--QLVEKEKIEAEELLQKQIKEIAKRGGK 690
Query: 287 YP 282
P
Sbjct: 691 KP 692
>12_02_0318 - 17457182-17462232,17462745-17462955,17463356-17463403,
17466161-17466346
Length = 1831
Score = 28.3 bits (60), Expect = 7.9
Identities = 22/89 (24%), Positives = 37/89 (41%)
Frame = -2
Query: 308 LSDRAVQYPADKRKHPVLCVTRDGTTFTAITGQKTYVESQKHKRNIDAANIVVENIRPNP 129
L+D A+ +PA+KR V C+T TA+ +Y R++ N++
Sbjct: 1687 LADPALDFPAEKRHEMVSCLTNVVVYETAMPLTVSYQVGLSSGRSL--------NVKSAR 1738
Query: 128 TVDWNNATDRLQSKRSKRSISFDSLEEAQ 42
W R+ R+ S S ++ E Q
Sbjct: 1739 IFRWEREESRIFMTRNFGSASLENAERVQ 1767
>11_01_0442 -
3369827-3370168,3370608-3372616,3372953-3373277,
3373386-3373415
Length = 901
Score = 28.3 bits (60), Expect = 7.9
Identities = 17/68 (25%), Positives = 32/68 (47%)
Frame = -2
Query: 647 DPAIKQQEEKNKQLVTKLIATFTEHTNALQAVVAQKTEELFKKQEFIERIIAIKDKQIEA 468
D + ++ K+ V +L E ++ VA+KT+EL + ++ I +Q+EA
Sbjct: 145 DDQVNHLDDALKECVRQLRQAREEQEEKIRDAVAKKTQELDSHKSELQNHIYELKQQLEA 204
Query: 467 KDLQVTRV 444
L+ V
Sbjct: 205 AKLEAATV 212
>07_03_1424 -
26474464-26474514,26474549-26474635,26474905-26475006,
26475149-26475260,26475405-26475463,26475559-26475633,
26475734-26475832,26476128-26476343,26476426-26476500,
26476583-26476670,26476757-26476902,26477240-26477347,
26477417-26478436,26478437-26478715,26479471-26480520,
26480636-26480692,26480780-26480837,26481379-26481458,
26481598-26481654,26481764-26481833,26481967-26482202,
26482341-26482445,26482534-26482680,26482758-26482823,
26482916-26482979,26484040-26484200,26484308-26484400,
26484487-26484600,26484684-26484803,26484893-26484976,
26485061-26485216,26485389-26485811
Length = 1885
Score = 28.3 bits (60), Expect = 7.9
Identities = 11/44 (25%), Positives = 28/44 (63%)
Frame = -2
Query: 458 QVTRVMTDLNRMYTGFQETMQRKDEMMHKKDELLQVKDTQVSNL 327
+++ V + +MY + ++ R++E++H ++LLQ + T + +L
Sbjct: 797 EISLVKENAEKMYGHDEISVYRQNEILHSSEQLLQDELTHIKSL 840
>02_02_0536 +
11304298-11304400,11304731-11305797,11306026-11306416,
11307164-11308041
Length = 812
Score = 28.3 bits (60), Expect = 7.9
Identities = 17/65 (26%), Positives = 35/65 (53%)
Frame = -2
Query: 551 VAQKTEELFKKQEFIERIIAIKDKQIEAKDLQVTRVMTDLNRMYTGFQETMQRKDEMMHK 372
V ++ +E KK E + + +D++I +DL+ R + + GF M+ KDE + +
Sbjct: 608 VFKRLDEQKKKNEKPDLMSLFEDQKIMKQDLEEIRKRLYMLELKEGFH--MEEKDEPIQE 665
Query: 371 KDELL 357
D+++
Sbjct: 666 DDQVV 670
>01_06_0117 +
26605186-26605443,26605540-26605583,26605659-26605737,
26605822-26605944,26606300-26606482,26606562-26606648,
26608149-26608255,26608387-26608474,26608805-26608885,
26608983-26609059,26609183-26609318,26609548-26609610,
26609983-26610563,26610816-26610933
Length = 674
Score = 28.3 bits (60), Expect = 7.9
Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Frame = -2
Query: 272 RKHPVLCVTRDGTTFTAITGQKTYVESQKHKRNIDAANIVVENIRPNP-TVDWNN 111
R +P + V R G TA+ + Y+ Q +R + ++E + PNP T +W N
Sbjct: 392 RINPSVDVIRWGLGSTAVRMAEDYIYGQHQRRRLAYFVELMEVLNPNPRTENWLN 446
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,293,223
Number of Sequences: 37544
Number of extensions: 438736
Number of successful extensions: 1369
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1329
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1367
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2279943096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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