Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc11b20
(368 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4A8.03c |ptc4||protein phosphatase 2C Ptc4|Schizosaccharomyc... 30 0.100
SPBC23G7.07c |||replication regulator |Schizosaccharomyces pombe... 29 0.17
SPBC1703.09 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 29 0.23
SPCC188.03 |cnd3||condensin subunit Cnd3 |Schizosaccharomyces po... 27 0.70
SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter family|Sch... 26 1.6
SPAC140.03 |arb1||argonaute binding protein 1|Schizosaccharomyce... 26 2.1
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||... 25 3.7
SPCC4B3.04c |nte1||lysophospholipase|Schizosaccharomyces pombe|c... 24 6.5
SPAC13G7.05 |||acyl-coA-sterol acyltransferase |Schizosaccharomy... 24 6.5
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi... 24 8.6
SPBC146.09c |lsd1|swm1, saf110|histone demethylase SWIRM1|Schizo... 24 8.6
SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|... 24 8.6
SPBC4C3.06 |||actin cytoskeletal protein Syp1|Schizosaccharomyce... 24 8.6
>SPAC4A8.03c |ptc4||protein phosphatase 2C Ptc4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 383
Score = 30.3 bits (65), Expect = 0.100
Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 3/61 (4%)
Frame = -1
Query: 341 FNKRSIMNSGDDDA---TRLHYSNAHAKQTLATLFANRNHSSFYEYAITFVSTLLFKNNL 171
F+ R+++ S D+D RL+YS A T +A + S A+ V+ + KNNL
Sbjct: 140 FSLRTVLQSRDEDLLWRARLYYSFLQADMDYLTNYARPSPDSAVPGAVGTVAIITSKNNL 199
Query: 170 N 168
+
Sbjct: 200 S 200
>SPBC23G7.07c |||replication regulator |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 277
Score = 29.5 bits (63), Expect = 0.17
Identities = 13/30 (43%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Frame = -1
Query: 131 NFEI-NVFGKSLLLSKFVNFCIANSDGVTI 45
NF++ +FGK + L + +N+C AN GV I
Sbjct: 179 NFKVAKLFGKHIRLEEHINYCKANKIGVGI 208
>SPBC1703.09 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 202
Score = 29.1 bits (62), Expect = 0.23
Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Frame = -1
Query: 191 LLFKNNLNLMVACNLINTL-INFEINVFGKS-LLLSKFVN 78
LLFKN+L L+ AC +NT IN+ L+L +F N
Sbjct: 156 LLFKNSLVLLAACYFMNTTPSRLVINLIRSGYLILKRFAN 195
>SPCC188.03 |cnd3||condensin subunit Cnd3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 875
Score = 27.5 bits (58), Expect = 0.70
Identities = 17/46 (36%), Positives = 26/46 (56%)
Frame = +1
Query: 70 MQKLTNLLSNKLLPNTLISKLINVLIKLHATIKFKLFLKSNVLTNV 207
++ LTN LS LP++LIS I +L KL ++ L ++T V
Sbjct: 385 LKSLTNSLSTMALPDSLISLHIELLRKLCSSENDFCSLLVEIITEV 430
>SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter
family|Schizosaccharomyces pombe|chr 3|||Manual
Length = 791
Score = 26.2 bits (55), Expect = 1.6
Identities = 11/33 (33%), Positives = 21/33 (63%)
Frame = -1
Query: 173 LNLMVACNLINTLINFEINVFGKSLLLSKFVNF 75
+N+ V+ L+NTLI +I FG ++ + + + F
Sbjct: 183 VNICVSAKLVNTLIIEQIKFFGVNIGIGRAILF 215
>SPAC140.03 |arb1||argonaute binding protein 1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 399
Score = 25.8 bits (54), Expect = 2.1
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = +1
Query: 61 LLAMQKLTNLLSNKLLPNTLISKLINVLIKLH 156
LLA Q T L+SNK L L +L L +H
Sbjct: 204 LLAEQAETELISNKRLSTKLPGRLQRALASIH 235
>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 3227
Score = 25.0 bits (52), Expect = 3.7
Identities = 28/82 (34%), Positives = 42/82 (51%), Gaps = 2/82 (2%)
Frame = -1
Query: 251 LFANRNHSSFYEYAITFVSTLLFKNNLNLMVACNLINTLINFEINVFGK--SLLLSKFVN 78
L A R+H+S IT VST+L +LMV C L+ I +V GK S +L +F
Sbjct: 2756 LSALRDHTS-----ITHVSTVLLPLIESLMVICRLV--FIELPEDV-GKHISPILERFKT 2807
Query: 77 FCIANSDGVTIQHKMLTNVLSF 12
I+ T +H+ + N++ F
Sbjct: 2808 LFIS----FTEEHRKIINMMVF 2825
>SPCC4B3.04c |nte1||lysophospholipase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1316
Score = 24.2 bits (50), Expect = 6.5
Identities = 17/63 (26%), Positives = 27/63 (42%)
Frame = -1
Query: 284 SNAHAKQTLATLFANRNHSSFYEYAITFVSTLLFKNNLNLMVACNLINTLINFEINVFGK 105
S+A Q + T F S+ YEY + + N N + A L N + + I+ F K
Sbjct: 296 SSAQIVQVILTRFQRVTFSTGYEYLGLSDAIFSIEKNFNSLTAYELPNYIRSDIIDDFKK 355
Query: 104 SLL 96
+
Sbjct: 356 EAM 358
>SPAC13G7.05 |||acyl-coA-sterol acyltransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 537
Score = 24.2 bits (50), Expect = 6.5
Identities = 13/41 (31%), Positives = 23/41 (56%)
Frame = +1
Query: 94 SNKLLPNTLISKLINVLIKLHATIKFKLFLKSNVLTNVMAY 216
S+ +L LIS L++ + L AT KF+ ++ + L + Y
Sbjct: 460 SHAVLLTFLISALVHEFVMLLATGKFRCYILTFQLLQIPLY 500
>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 3071
Score = 23.8 bits (49), Expect = 8.6
Identities = 14/43 (32%), Positives = 29/43 (67%), Gaps = 3/43 (6%)
Frame = -1
Query: 134 INFEINVFGKSLLLSKF-VNFCIANSDGV--TIQHKMLTNVLS 15
INFEI++ K+ L+KF V+ + +++ + +Q+K+ N++S
Sbjct: 775 INFEISILQKATNLTKFKVSSHMKHAEIMFSDVQYKVFINMMS 817
>SPBC146.09c |lsd1|swm1, saf110|histone demethylase
SWIRM1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1000
Score = 23.8 bits (49), Expect = 8.6
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = +1
Query: 61 LLAMQKLTNLLSNKLLPNTLI 123
L A L +L+ N +LPNTL+
Sbjct: 749 LAARDVLASLIGNVVLPNTLV 769
>SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 530
Score = 23.8 bits (49), Expect = 8.6
Identities = 16/49 (32%), Positives = 21/49 (42%)
Frame = -1
Query: 329 SIMNSGDDDATRLHYSNAHAKQTLATLFANRNHSSFYEYAITFVSTLLF 183
S+ S DD A+ + + T A SS Y TFVST L+
Sbjct: 69 SVTESSDDGASTA-LPTTSTESVVVTTSAPAASSSATSYPATFVSTPLY 116
>SPBC4C3.06 |||actin cytoskeletal protein Syp1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 818
Score = 23.8 bits (49), Expect = 8.6
Identities = 11/36 (30%), Positives = 15/36 (41%)
Frame = -1
Query: 320 NSGDDDATRLHYSNAHAKQTLATLFANRNHSSFYEY 213
N D R HY + H+ Q N N SS+ +
Sbjct: 329 NIDDSSIERRHYDSNHSSQIRDHPSTNNNASSYQNF 364
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,323,312
Number of Sequences: 5004
Number of extensions: 22603
Number of successful extensions: 67
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 67
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 116121426
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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